Ggra8846.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8846.t2
Unique NameGgra8846.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length593
Homology
BLAST of Ggra8846.t2 vs. uniprot
Match: A0A2V3IX35 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX35_9FLOR)

HSP 1 Score: 525 bits (1352), Expect = 6.560e-170
Identity = 266/508 (52.36%), Postives = 347/508 (68.31%), Query Frame = 0
Query:   35 RKTISIAIWDISSGKRVGEVPNIHNHVSHVAITKDNNCIIGETYDGLFFWHFDKRETWTVRTSLKGLPRVRGLSSIKPTATPEHVLTTHKRGGRSVIVLWNTRTGAQEKVYDAVESKPNCVDIYSKRQYFASGHDNGFIHLWNWRDKRPILTFKNEGSEPGAQNGVSLSDANDEKDFSQSAQASARTISISFFERENDLSLASVS------SELGGVQQYIRIWVLPPKKFLDGSSQAFVSCKRAAVWKCRLVRQVFCSGDGNLFTGGDDGVARMWEREEDDTWKEYIIEKD--SNEDSKMSSTFICCGKKTKLIATYVTKSPYVVVWDTGNKDLRRTIMTRTGVYKPYIPIQAQSVDVADMNQYQTLKQEKGAGEFWAKCGEGGSSXXXXXXXXXXXKKLWDNPEFFFTQQTRDSNSVVRPGELQPWLQLKLEHGDMQGLDVCFDQPVTSGVTGLFVNAPNSFGGN---VGGGSEDGKRDGR-EVLQRQGMAIKLEDKRTELFEVEG 530
            RK +SI IWD+ SGK+VGEV  I +HV H+AIT+DNNCIIGET DGLFFWHF+  ETW ++   K  PR++GLSSIKPT  P+ VLTTHK     +I LW+T+TG++E++Y +V SKPNC+D+ SK ++FASGHDNGFIHLWNW+D +PILTF++EG+  G+Q  VSLS+AN ++D     Q +  TISISFFER+NDL LASVS      S++    + IRIW+LPP++ L    Q+FVSCKR AVW+   VR+V+ S DGNLFTGGDDGVARMWE+E+DDTWK+Y +EKD  S     M+S FI CGK+TK +ATYVTKSPYVVVWDT +K+L R IM RTG Y+PY P+   SVDV+DM + Q++K  K   +F A  G+ G+            + LW NP+ +F+    D   V R GELQPWL + +     + L VCFDQPV    +G FV      G      G   ED K + + +  +R+G+ +KLE+   E FE++G
Sbjct:  688 RKLVSITIWDVHSGKQVGEVGGIKSHVVHLAITRDNNCIIGETNDGLFFWHFETGETWRLKDVHKATPRLKGLSSIKPTTKPQLVLTTHKLEKEPLIALWDTQTGSRERMYSSVSSKPNCIDVSSKMEFFASGHDNGFIHLWNWKDDKPILTFRDEGTGKGSQQVVSLSEANSQRDPDGKGQVNTGTISISFFERDNDLLLASVSWNPADRSKIRKTPELIRIWLLPPRRILADDVQSFVSCKRTAVWQSPRVREVYWSTDGNLFTGGDDGVARMWEQEDDDTWKQYTMEKDVKSERPLNMASAFISCGKQTKFVATYVTKSPYVVVWDTTDKELCRKIMKRTGFYRPYFPLLWHSVDVSDMQELQSVKSSKNVNDF-ADYGKVGTDAVVESRHEKGSRTLWQNPKLYFSSP--DEKGVKRLGELQPWLTMAVGAAGKEDLRVCFDQPVRHCYSGTFVIDKGGAGLQDITSGVDPEDDKNEAKGKQAERRGIVVKLENGCVEFFELQG 1192          
BLAST of Ggra8846.t2 vs. uniprot
Match: R7QKS7 (WD40-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKS7_CHOCR)

HSP 1 Score: 289 bits (740), Expect = 4.680e-83
Identity = 185/522 (35.44%), Postives = 270/522 (51.72%), Query Frame = 0
Query:   35 RKTISIAIWDISSGKRVGEVPNIHNHVSHVAITKDNNCIIGETYDGLFFWHFDK-RETWTVRTSLKGLPRVRGLSSIKPTATPEHVLTTHKRGG-----RSVIVLWNTRTGAQEKVYDAVESKPNCVDIYSKRQYFASGHDNGFIHLWNWR--DKRPILTFKNEGS--EPGAQNGVSLSDANDEKDFSQSAQASARTISISFFERENDLSLASVSSELGGVQQYIRIWVLPPKKFLDGSSQAFVSCKRAAVWKCRLVRQVFCSGDGNLFTGGDDGVARMW-EREEDDTWKEYIIEKDSNED-SKMSSTFICCGKKTKLIATYVTKSPYVVVWDTGNKDLRRT--IMTRTGVYKPYIPIQAQSVDVADMNQYQTLKQEKGAGEFWAKCGEGGSSXXXXXXXXXXXKKLWDNPEFFFTQQTRDSNSVVRPGELQPWLQLKLEHGDMQGLDVCFDQPVTSGVTGLFVNAPNSFGGNVG-----------GGSEDGKRDGREVLQRQGMAIKLEDKRTELFEVEGG 531
            RK  SI IWD+ +G+ V  V  I N V  +AIT D++C+I ET DGLFFW  +K  + +    +++  PR   ++S+ PT     +LTT + GG        I LWNT TG + + +D V S+  C D+    +YFASGH+NG+IHLW     +  P+L+FKNEG+  E G Q+ V+L   N  +     +  + +TIS+SF+ +E    LA+VS+      + IR+W LPP   +    ++FV+  R AV +C  VRQV  S  G  F+ GDDG+ARMW +REE   W ++ + +   E  S +SS  +  G+ TKL+ATYVTKSPYV VWD    D      +  R  +Y+ Y+ +   S D  D+     L++        +  G GG             +K +   +          N+    GE+ P L++K E    +GL+VCF+QPV  GV+G F       GG +G            G   G+R G     R+GM   L+D    +FE+EGG
Sbjct:  443 RKVSSICIWDVETGRLVCRVERIENLVRCLAITPDHSCVIAETVDGLFFWKLEKLSDGYRAGKAVEATPRPNPVTSMMPTVRTRELLTTSRSGGDESMHTGTIALWNTDTGERVRTFDCVTSQATCTDVSLDGEYFASGHNNGYIHLWTLHGSETEPVLSFKNEGAVAENGQQH-VALDKVNRTR-----SNGTLKTISLSFYGKEEQRWLAAVSAN-----EIIRVWELPPGSIIRKGKESFVTTIRRAVLRCPRVRQVQWSKCGWFFSAGDDGIARMWMQREEGGRWVDHALGRKKRERASDISSVLVSSGRGTKLVATYVTKSPYVTVWDLSGFDGGNASQVARRQRLYRSYMCMVPDSEDARDIEHLTALRKTSTGVSGKSGVGNGGLEGMADAEIRRELEKRFHKLDI--------KNATKLVGEMHPRLKMKPEEW-RRGLEVCFEQPVIVGVSGTFRRGEREDGGKIGVDPAAVHAAGIPGELAGERGGEYEEGRRGMVAALQDGAIAMFELEGG 944          
The following BLAST results are available for this feature:
BLAST of Ggra8846.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX356.560e-17052.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QKS74.680e-8335.44WD40-repeat containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 138..177
e-value: 0.09
score: 21.9
coord: 47..85
e-value: 240.0
score: 2.0
coord: 269..305
e-value: 4.8
score: 12.7
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 35..392
e-value: 1.5E-19
score: 71.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 40..366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:497921..499699 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8846.t2Ggra8846.t2Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 497921..499699 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8846.t2 ID=Ggra8846.t2|Name=Ggra8846.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=593bp
MREPRSKTKSEPTPRPASLHGNGKNSTTTQPTAPRKTISIAIWDISSGKR
VGEVPNIHNHVSHVAITKDNNCIIGETYDGLFFWHFDKRETWTVRTSLKG
LPRVRGLSSIKPTATPEHVLTTHKRGGRSVIVLWNTRTGAQEKVYDAVES
KPNCVDIYSKRQYFASGHDNGFIHLWNWRDKRPILTFKNEGSEPGAQNGV
SLSDANDEKDFSQSAQASARTISISFFERENDLSLASVSSELGGVQQYIR
IWVLPPKKFLDGSSQAFVSCKRAAVWKCRLVRQVFCSGDGNLFTGGDDGV
ARMWEREEDDTWKEYIIEKDSNEDSKMSSTFICCGKKTKLIATYVTKSPY
VVVWDTGNKDLRRTIMTRTGVYKPYIPIQAQSVDVADMNQYQTLKQEKGA
GEFWAKCGEGGSSGQGGSKHQQGSKKLWDNPEFFFTQQTRDSNSVVRPGE
LQPWLQLKLEHGDMQGLDVCFDQPVTSGVTGLFVNAPNSFGGNVGGGSED
GKRDGREVLQRQGMAIKLEDKRTELFEVEGGVRVGAVASGVESSEGKKVG
EKGGSKVVVSCAKVSANEKESAGKVKEVANAATAAGDVSSVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf