Ggra8841.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8841.t1
Unique NameGgra8841.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:482847..484160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706709.1
PFAMszf-MYND
Max annot lvl2759|Eukaryota
Evalue1.49e-48
EggNOG OGs28N85@1|root,2QUTF@2759|Eukaryota
DescriptionMYND finger
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8841Ggra8841Gracilaria gracilis GNS1m malegenetig00000860_pilon 482847..484160 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8841.t1.start1Ggra8841.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 482847..482849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8841.t1.CDS1Ggra8841.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 482847..484160 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8841.t1.exon1Ggra8841.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 482847..484160 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8841.t1.stop1Ggra8841.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 484158..484160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8841.t1Ggra8841.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 482847..484160 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8841.t1 ID=Ggra8841.t1|Name=Ggra8841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp
MATLALNRSHVALFERARKLSSPPSKLAYQIVAAQLRVWTTDQNDVVCRP
WYILCLELYPRGSVVNQTLMQPPSRRPSPDDMLSFLLKHIVDPPKDESPA
CPTQVSFVDDAVTTALAPHLRRLKIQVETLTLADGLSDYIKRFSDRMIND
DRAMRSESAERPGLLSVPHATPHLLRELMVAATSMHKAQPWQNIPEHVAL
RVLLPADTNERRERFFLTVLGSDEKVMGFALMPSLHDLRAKYRRAVLNRA
AQIEDQPDLRIAPDVLVCASCGRTVVEQLDENNRRYVHRCAGCKRLLYCG
QACQRRDWFRNHRHECKQAAEDSEFVFRRDEWAWLKRELACLFVDPTAVP
FDDLDGFEQYKWPFAEDQSPPLYPVAFASVQGAAARVTLPTKKEIQIMVD
VARTLTECVRTPPKDGVIHFSSGVSLSVAENLADNLP*
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spliced messenger RNA

>Ggra8841.t1 ID=Ggra8841.t1|Name=Ggra8841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000860_pilon:482847..484160+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACGCTCGCGCTGAATCGAAGCCATGTCGCTCTGTTCGAGCGTGC
TCGCAAGCTATCGTCCCCGCCCTCCAAGCTCGCATATCAGATCGTCGCCG
CTCAGCTTCGCGTCTGGACCACTGATCAGAACGACGTCGTCTGTCGACCT
TGGTACATTCTGTGTCTTGAGCTTTATCCACGCGGATCCGTCGTCAACCA
GACGCTCATGCAGCCGCCGTCGCGACGGCCGTCACCCGATGACATGTTGT
CCTTTCTGCTCAAACACATAGTTGACCCTCCGAAAGACGAGTCGCCCGCT
TGTCCTACACAAGTCTCATTTGTCGACGATGCCGTCACTACTGCACTTGC
GCCGCATCTGCGCCGTCTCAAGATCCAGGTGGAGACCTTAACGTTGGCAG
ATGGACTTTCAGATTACATCAAGCGCTTCTCTGATAGAATGATCAACGAC
GACCGTGCCATGCGTTCCGAATCTGCAGAACGTCCAGGCTTGCTCTCCGT
CCCGCACGCAACGCCACATTTGCTGCGAGAGCTTATGGTTGCCGCTACTA
GCATGCACAAGGCTCAACCATGGCAGAACATACCAGAGCATGTTGCACTG
CGAGTGCTGCTGCCGGCCGATACCAACGAGCGACGTGAACGATTCTTTCT
CACAGTGCTGGGAAGCGACGAAAAGGTTATGGGCTTTGCTCTCATGCCCT
CACTTCATGACCTGCGAGCAAAGTACCGTCGAGCTGTCCTCAATCGCGCA
GCACAAATTGAGGATCAACCAGATCTGCGAATCGCCCCAGACGTGCTCGT
CTGCGCTAGCTGTGGACGAACAGTGGTCGAGCAACTGGATGAAAACAACC
GCCGATACGTCCATCGATGCGCTGGCTGTAAACGACTGCTCTACTGTGGT
CAGGCTTGCCAGCGTCGTGATTGGTTCCGCAATCACCGGCACGAATGCAA
GCAAGCGGCAGAAGATTCTGAATTTGTGTTCCGCCGCGATGAGTGGGCCT
GGCTCAAGAGGGAACTGGCCTGTCTTTTTGTGGATCCCACTGCGGTTCCA
TTCGACGATCTTGATGGCTTTGAACAGTATAAATGGCCCTTTGCTGAGGA
TCAAAGCCCTCCGCTTTACCCTGTGGCATTTGCCAGTGTCCAGGGGGCGG
CAGCCAGGGTCACTCTACCAACTAAGAAAGAAATTCAAATCATGGTAGAC
GTTGCACGTACATTGACTGAGTGTGTGAGGACGCCACCCAAGGACGGTGT
CATTCACTTCTCAAGCGGGGTCAGCCTATCGGTGGCAGAAAATCTAGCCG
ACAATCTACCCTGA
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protein sequence of Ggra8841.t1

>Ggra8841.t1 ID=Ggra8841.t1|Name=Ggra8841.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=438bp
MATLALNRSHVALFERARKLSSPPSKLAYQIVAAQLRVWTTDQNDVVCRP
WYILCLELYPRGSVVNQTLMQPPSRRPSPDDMLSFLLKHIVDPPKDESPA
CPTQVSFVDDAVTTALAPHLRRLKIQVETLTLADGLSDYIKRFSDRMIND
DRAMRSESAERPGLLSVPHATPHLLRELMVAATSMHKAQPWQNIPEHVAL
RVLLPADTNERRERFFLTVLGSDEKVMGFALMPSLHDLRAKYRRAVLNRA
AQIEDQPDLRIAPDVLVCASCGRTVVEQLDENNRRYVHRCAGCKRLLYCG
QACQRRDWFRNHRHECKQAAEDSEFVFRRDEWAWLKRELACLFVDPTAVP
FDDLDGFEQYKWPFAEDQSPPLYPVAFASVQGAAARVTLPTKKEIQIMVD
VARTLTECVRTPPKDGVIHFSSGVSLSVAENLADNLP*
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mRNA from alignment at tig00000860_pilon:482847..484160+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8841.t1 ID=Ggra8841.t1|Name=Ggra8841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000860_pilon:482847..484160+ (Gracilaria gracilis GNS1m male)
ATGGCTACGCTCGCGCTGAATCGAAGCCATGTCGCTCTGTTCGAGCGTGC
TCGCAAGCTATCGTCCCCGCCCTCCAAGCTCGCATATCAGATCGTCGCCG
CTCAGCTTCGCGTCTGGACCACTGATCAGAACGACGTCGTCTGTCGACCT
TGGTACATTCTGTGTCTTGAGCTTTATCCACGCGGATCCGTCGTCAACCA
GACGCTCATGCAGCCGCCGTCGCGACGGCCGTCACCCGATGACATGTTGT
CCTTTCTGCTCAAACACATAGTTGACCCTCCGAAAGACGAGTCGCCCGCT
TGTCCTACACAAGTCTCATTTGTCGACGATGCCGTCACTACTGCACTTGC
GCCGCATCTGCGCCGTCTCAAGATCCAGGTGGAGACCTTAACGTTGGCAG
ATGGACTTTCAGATTACATCAAGCGCTTCTCTGATAGAATGATCAACGAC
GACCGTGCCATGCGTTCCGAATCTGCAGAACGTCCAGGCTTGCTCTCCGT
CCCGCACGCAACGCCACATTTGCTGCGAGAGCTTATGGTTGCCGCTACTA
GCATGCACAAGGCTCAACCATGGCAGAACATACCAGAGCATGTTGCACTG
CGAGTGCTGCTGCCGGCCGATACCAACGAGCGACGTGAACGATTCTTTCT
CACAGTGCTGGGAAGCGACGAAAAGGTTATGGGCTTTGCTCTCATGCCCT
CACTTCATGACCTGCGAGCAAAGTACCGTCGAGCTGTCCTCAATCGCGCA
GCACAAATTGAGGATCAACCAGATCTGCGAATCGCCCCAGACGTGCTCGT
CTGCGCTAGCTGTGGACGAACAGTGGTCGAGCAACTGGATGAAAACAACC
GCCGATACGTCCATCGATGCGCTGGCTGTAAACGACTGCTCTACTGTGGT
CAGGCTTGCCAGCGTCGTGATTGGTTCCGCAATCACCGGCACGAATGCAA
GCAAGCGGCAGAAGATTCTGAATTTGTGTTCCGCCGCGATGAGTGGGCCT
GGCTCAAGAGGGAACTGGCCTGTCTTTTTGTGGATCCCACTGCGGTTCCA
TTCGACGATCTTGATGGCTTTGAACAGTATAAATGGCCCTTTGCTGAGGA
TCAAAGCCCTCCGCTTTACCCTGTGGCATTTGCCAGTGTCCAGGGGGCGG
CAGCCAGGGTCACTCTACCAACTAAGAAAGAAATTCAAATCATGGTAGAC
GTTGCACGTACATTGACTGAGTGTGTGAGGACGCCACCCAAGGACGGTGT
CATTCACTTCTCAAGCGGGGTCAGCCTATCGGTGGCAGAAAATCTAGCCG
ACAATCTACCCTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:482847..484160+

>Ggra8841.t1 ID=Ggra8841.t1|Name=Ggra8841.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1314bp|location=Sequence derived from alignment at tig00000860_pilon:482847..484160+ (Gracilaria gracilis GNS1m male)
ATGGCTACGCTCGCGCTGAATCGAAGCCATGTCGCTCTGTTCGAGCGTGC
TCGCAAGCTATCGTCCCCGCCCTCCAAGCTCGCATATCAGATCGTCGCCG
CTCAGCTTCGCGTCTGGACCACTGATCAGAACGACGTCGTCTGTCGACCT
TGGTACATTCTGTGTCTTGAGCTTTATCCACGCGGATCCGTCGTCAACCA
GACGCTCATGCAGCCGCCGTCGCGACGGCCGTCACCCGATGACATGTTGT
CCTTTCTGCTCAAACACATAGTTGACCCTCCGAAAGACGAGTCGCCCGCT
TGTCCTACACAAGTCTCATTTGTCGACGATGCCGTCACTACTGCACTTGC
GCCGCATCTGCGCCGTCTCAAGATCCAGGTGGAGACCTTAACGTTGGCAG
ATGGACTTTCAGATTACATCAAGCGCTTCTCTGATAGAATGATCAACGAC
GACCGTGCCATGCGTTCCGAATCTGCAGAACGTCCAGGCTTGCTCTCCGT
CCCGCACGCAACGCCACATTTGCTGCGAGAGCTTATGGTTGCCGCTACTA
GCATGCACAAGGCTCAACCATGGCAGAACATACCAGAGCATGTTGCACTG
CGAGTGCTGCTGCCGGCCGATACCAACGAGCGACGTGAACGATTCTTTCT
CACAGTGCTGGGAAGCGACGAAAAGGTTATGGGCTTTGCTCTCATGCCCT
CACTTCATGACCTGCGAGCAAAGTACCGTCGAGCTGTCCTCAATCGCGCA
GCACAAATTGAGGATCAACCAGATCTGCGAATCGCCCCAGACGTGCTCGT
CTGCGCTAGCTGTGGACGAACAGTGGTCGAGCAACTGGATGAAAACAACC
GCCGATACGTCCATCGATGCGCTGGCTGTAAACGACTGCTCTACTGTGGT
CAGGCTTGCCAGCGTCGTGATTGGTTCCGCAATCACCGGCACGAATGCAA
GCAAGCGGCAGAAGATTCTGAATTTGTGTTCCGCCGCGATGAGTGGGCCT
GGCTCAAGAGGGAACTGGCCTGTCTTTTTGTGGATCCCACTGCGGTTCCA
TTCGACGATCTTGATGGCTTTGAACAGTATAAATGGCCCTTTGCTGAGGA
TCAAAGCCCTCCGCTTTACCCTGTGGCATTTGCCAGTGTCCAGGGGGCGG
CAGCCAGGGTCACTCTACCAACTAAGAAAGAAATTCAAATCATGGTAGAC
GTTGCACGTACATTGACTGAGTGTGTGAGGACGCCACCCAAGGACGGTGT
CATTCACTTCTCAAGCGGGGTCAGCCTATCGGTGGCAGAAAATCTAGCCG
ACAATCTACCCTGA
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