Ggra8841.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8841.t1
Unique NameGgra8841.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length438
Homology
BLAST of Ggra8841.t1 vs. uniprot
Match: A0A2V3IUG2 (MYND-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG2_9FLOR)

HSP 1 Score: 659 bits (1699), Expect = 1.890e-235
Identity = 313/438 (71.46%), Postives = 367/438 (83.79%), Query Frame = 0
Query:    1 MATLALNRSHVALFERARKLSSPPSKLAYQIVAAQLRVWTTDQNDVVCRPWYILCLELYPRGSVVNQTLMQPPSRRPSPDDMLSFLLKHIVDPPKDESPACPTQVSFVDDAVTTALAPHLRRLKIQVETLTLADGLSDYIKRFSDRMINDDRAMRSESAERPGLLSVPHATPHLLRELMVAATSMHKAQPWQNIPEHVALRVLLPADTNERRERFFLTVLGSDEKVMGFALMPSLHDLRAKYRRAVLNRAAQIEDQPDL-RIAPDVLVCASCGRTVVEQLDENNRRYVHRCAGCKRLLYCGQACQRRDWFRNHRHECKQAAEDSEFVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEQYKWPFAEDQSPPLYPVAFASVQGAAARVTLPTKKEIQIMVDVARTLTECVRTPPKDGVIHFSSGVSLSVAENLADNLP 437
            M  +AL+  + +L +RA KL  P +KLAYQIVAAQLRVWT D     CRPWYI CLELYPRG+V+NQT+M+P S+ PSP DMLSFLL HIVDPPK++  A PTQVSF+D +VT ALAPHLRRL I+V TLTLADGLSDY+KRFSD+MI+DDRA RS+++ERPGLLSVPH +  L+ +L  AA  M+ AQPW+NI EH+ALRVLLPAD+ +RR+RFFLTVLGSDEK+MGFALMPSLHDLR+KYRRAVL+R   +ED  +  RIAPDVLVCASCGR V EQL E+ RR+VHRCA CKRLLYC + CQRRDW + HR EC+ AA D+E+VFRRDEW WLKREL CLFVDPT+VPFDDLDGFE +KWPF  +QSPPLYP+ FASVQG   RV LPTKKEI++M+D+ARTLTECVR PPKDGVIH +SGVS+SVAENLAD+LP
Sbjct:    1 MPPIALSSRNSSLIKRAHKLPPPNAKLAYQIVAAQLRVWTADHTGRACRPWYIFCLELYPRGTVINQTIMRPASQPPSPTDMLSFLLSHIVDPPKNQPVALPTQVSFIDQSVTEALAPHLRRLNIEVATLTLADGLSDYVKRFSDKMISDDRATRSDTSERPGLLSVPHVSASLISKLTTAACKMYAAQPWRNIAEHLALRVLLPADSEKRRQRFFLTVLGSDEKIMGFALMPSLHDLRSKYRRAVLHRTDGLEDDGEQGRIAPDVLVCASCGRRVEEQLAEDGRRFVHRCAACKRLLYCDETCQRRDWAQRHRSECETAAADAEYVFRRDEWGWLKRELVCLFVDPTSVPFDDLDGFELFKWPFVREQSPPLYPLTFASVQGFTTRVALPTKKEIEVMIDIARTLTECVRPPPKDGVIHLASGVSISVAENLADSLP 438          
BLAST of Ggra8841.t1 vs. uniprot
Match: R7QKP3 (MYND-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKP3_CHOCR)

HSP 1 Score: 462 bits (1189), Expect = 1.270e-157
Identity = 225/445 (50.56%), Postives = 303/445 (68.09%), Query Frame = 0
Query:   15 ERARKLSSPPSKLAYQIVAAQLRVWTTDQNDVVCRPWYILCLELYPRGSVVNQTLMQPPSRRPSPDDMLSFLLKHIVDPPKDESPACPTQVSFVDDAVTTALAPHLRRLKIQVETLTLADGLSDYIKRFSDRMINDDRAMRSESAERPGLLSVPHATPHLLRELMVAATSMHKAQPWQNIPEHVALRVLLPADT--NERRERFFLTVLGSDEKVMGFALMPSLHDLRAKYRRAVLNRAAQIEDQPD-----------------LRIAPDVLVCASCGRTVVEQLDENNRRYVHRCAGCKRLLYCGQACQRRDWFRNHRHECKQAAEDSEFVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEQYKWPFAEDQSPPLYPVAFASVQGAAA---RVTLPTKKEIQIMVDVARTLTECVRTPPKDGVIHFSSGVSLSVAENLADNLP 437
            E A+++  P ++LAYQ++A QLRVW  DQNDV CRPWYIL  ELYPRG V+NQ +  P +++P P  +L FL  HI+ PP+ E+ A PT VSF++DAVT AL P L +L+I+  TL +ADG+++Y K FS++MIN ++A R ++AERPG+LSV   TP +  E+  AA  M +A+PW  I EH+AL + LP     +  R+R+++TVLGS   V GFALMPSL  LR KYRRAV N+   +E+  D                  R   DVL+C +CG+ V E  + +  +YV RC GC+RLLYC + CQ+ DW   H+ EC+QA  D+E+VF+RDEWAWL+RELA LF+DPTA+PFDDLD  E YKW + E+ SPPL+P+ F +V+G A+   R+  PT KE   M  +A+ LTECV  PP DG +H +SGVS+SVAENL ++LP
Sbjct:   15 EAAQRVEPPSTRLAYQVLAIQLRVWLADQNDVACRPWYILIAELYPRGKVINQRVHSPAAQKPGPAALLHFLADHILCPPEGEA-ARPTHVSFIEDAVTDALKPTLTKLRIEAGTLIVADGIAEYTKLFSNKMINMNKATRGDAAERPGILSVRGLTPSVAGEMCAAAKEMFRARPWSRIAEHIALEIRLPTPDPGHNYRDRYYVTVLGSAGNVQGFALMPSLTKLREKYRRAVRNKGEALEEVSDDEEGDGAFEGARKGHSVSRTMDDVLLCGACGKRVGEATEGDGAKYVDRCGGCRRLLYCNERCQKLDWRERHKDECQQATSDAEYVFKRDEWAWLQRELALLFLDPTAIPFDDLDAAETYKWDYIEEVSPPLHPLPFVTVEGTASGTNRMDRPTVKEFGFMTLIAKALTECVSPPPDDGTLHLASGVSISVAENLKESLP 458          
BLAST of Ggra8841.t1 vs. uniprot
Match: A0A6T6B3W4 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6B3W4_9RHOD)

HSP 1 Score: 238 bits (606), Expect = 2.380e-71
Identity = 139/368 (37.77%), Postives = 201/368 (54.62%), Query Frame = 0
Query:   42 DQNDVVCRPWYILCLELYPRGSVVNQTLMQPPSRRPSPDDMLSFLLKHIVDPPKDESPACPTQVSFVDDAVTTALAPHLRRLKIQVETLTLADGLSDYIKRFSDRMINDDRAMRSESAERPGLLSVPHATPHLLRELMVAATSMHKAQPWQNIPEHVALRVLLPADTNERRERFFLTVLGSDEKVMGFALMPSLHDLRAKYRRAVLNRAAQIEDQ-PDLRIAPDVLVCASCGRTVVEQLDENNRRYVHRCAGCKRLLYCGQACQRRDWFRNHRHEC-KQAAEDSEFVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEQYKWPFAEDQSPPLYPVAFASVQGAAARVTLPTKKEIQIMVDVARTLTE 407
            D+N  V RP+ IL +ELYPRG V+     +P    P P  +L+ +L  I+DP  D     P QV+FVD  +T AL P L+ L+I+  +L+ ADG+S++++ FS R++  + A  S+S+  PGLLSVP  T  L+  +M A  +M + QPW+ IPE+V L            ER  +TVLGS  +  GFA+  S    + KYR+A+      + D  P +R     ++C SCG     +   N+    HRCAGC+ + YC + CQ RDW   H +EC K    D +FV R     W  REL  LF++ +AVPFDDLD  E+Y WP  E     L P    +  G   R+  PT +E+ ++  +A  ++E
Sbjct:    3 DENSRVVRPYLILVMELYPRGCVIRNRYAKPAGSYPDPQAILNLILDEILDPMADNPQNRPMQVAFVDSNLTDALRPVLKTLEIETTSLSRADGVSEFLQAFSQRIVEKENAAISDSSNHPGLLSVPLVTASLVHRVMTACLNMQERQPWKIIPENVGLFCYYSG------ERVVVTVLGSAGRSQGFAVTRSPRAAKHKYRKAM---GLDLTDYGPTMR-----MLCGSCGTE--PEAGSNS----HRCAGCRSIFYCNENCQSRDWTAMHWNECDKLKRGDLDFVSRA---CWALRELVVLFMEESAVPFDDLDALEKYNWPTGEPPQSHLIPFVNITNLGFEPRIERPTPEELTMIRCIADGISE 347          
BLAST of Ggra8841.t1 vs. uniprot
Match: A0A1X6NLF1 (MYND-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLF1_PORUM)

HSP 1 Score: 231 bits (589), Expect = 1.110e-66
Identity = 160/470 (34.04%), Postives = 232/470 (49.36%), Query Frame = 0
Query:   19 KLSSPPSKLAYQIVAAQLRVWTTDQ-NDVVCRPWYILCLELYPRGSV-VNQTLMQPPSRRPSPDDMLSFLLKHIVDPPKDESPAC-PTQVSFVDDAVTTALAPHLRRLKIQVETLTLADGLSDYIKRFSDRMINDDRAMRSESAERPGLLSVPHATPHLLRELMVAATSMHKAQPWQNIPEHVALRVLLPADTNERRERFFLTVLGSDEKVMGFALMPSLHDLRAKYRRAVLNRAAQIEDQPDLR--IAPDVLVCASCGRTVVEQLDENNR-----------------------RYVHRCAGCKRLLYCGQACQRRDWFRNHRHECKQAAEDSEFVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEQYKWP-FAEDQSPP-------LYPVAFASVQGA-------------AARVTL------PTKKEIQIMVDVARTLTECVRTPPKDGVIHFSSGVSLSVAENLA 433
            + +S  SK  +QIV+  LRVW TD     V RP+Y+L LELYP GSV     + + P+  P P ++L F L  + +P  D  P   P  V+F+D+A T    P L    ++ +TLTLA+G+S+Y+   S++M+  D A   + +  PGLL  P  T  +LR +  +A +M  A+PW+ +PE +ALRV     T      +F++V GSD    GF   PSL  L+AK+ RA       + D  ++      +V++CA+CGR + E+     R                         V+RC+ C  + YCG+ CQ RDW   H  EC  A E    +  R E  W++RELA +  DPTAVPFDDLD   ++     A D   P       LYPV F +V GA             AA +T       P  +E++++  VAR L E V  PP  GV   + G+      +++
Sbjct:   59 RAASGGSKRVWQIVSLPLRVWATDPATGAVIRPFYMLALELYPSGSVSACGRVRERPAEHPPPLELLRFALASMAEPAGDNGPRVRPDVVTFLDEATTALATPPLAAAGMEAQTLTLAEGVSEYVASLSNKMVEKDTAAVGDVSGHPGLLRSPGVTVDVLRSMHASAAAMAAARPWRYLPERLALRV-----TALDGRVYFVSVFGSDGDATGFVAAPSLVALQAKFTRATGMGTPVLADGVEVPSVYGGEVVLCAACGRRLAEKGRPRPRPPCAGATGRSADGAAAGDDGVSGTPVNRCSRCHAVYYCGRPCQVRDWAARHHAECTDA-EAGPRLAARPEGVWVRRELALILCDPTAVPFDDLDAIAEHGLGGMAGDPDKPKPDAGGVLYPVPFVTVAGAGXXXXXXXAAGSDAAGLTAKPGVERPGLQELELLDAVARALAE-VTEPPARGVEVAAHGLRFCTERDMS 521          
BLAST of Ggra8841.t1 vs. uniprot
Match: A0A7S0BIP4 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BIP4_9RHOD)

HSP 1 Score: 166 bits (419), Expect = 2.340e-44
Identity = 105/319 (32.92%), Postives = 168/319 (52.66%), Query Frame = 0
Query:  102 PTQVSFVDDAVTTALAPHLRRLKIQVETLTLADGLSDYIKRFSDRMINDDRAMRSESAERPGLLSVPHATPHLLRELMVAATSMHKAQPWQNIPEHVALRVLLPADTNERRERFFLTVLGSDEKVMGFALMPSLHDLRAKYRRAVLNRAAQIEDQPDLRIAPDVLVCASCGRTVVEQLDENNRRYVHRCAGCKRLLYCGQACQRRDWFRNHRHECKQAAEDSEFVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEQYKWPFAEDQSPPLYPVAFASVQGAAA---RVTLPTKKEIQIMVDVARTLTECVRTPPKDGV 417
            P Q+SF+D+ +       L  + I+V  LT A G+ DYI +FS+++I   RA R ++AERPG+   P    H L +   A    + ++PW+ I E  A+     A+  +  ER ++TVLGS ++  G A+M S+  LR KY RA    +   + + D+      ++CA+CG+    +          RC GC+ L YC Q CQR +W + H++ECK  ++  E V R     W KRE   +F+DP+AVPFDDL+  E  ++  A+      +P+ F S+QG+     RV  P  +E++ +  +   L +  +   K+ V
Sbjct:    3 PVQISFIDEKLLEYCRKPLVSIGIEVVKLTEATGVEDYITKFSNKLIERGRASRGDAAERPGVHKGPGIQRHALEKYFSACKDFYSSKPWRRIDEVCAIE----AEWLKGGERRYVTVLGSSDRTYGVAVMGSIQALRRKYIRA----SGTYDIEKDIEAN---MLCANCGKEPETE--------TFRCVGCRTLFYCDQECQRTNW-KQHQYECKVPSK-LEHVTRE---VWNKREQTMVFLDPSAVPFDDLEYAEVNEFWDAQSSK---FPLVFVSIQGSPMLPPRVVRPNPQELEWITKLISALLQTEKIGTKEAV 294          
BLAST of Ggra8841.t1 vs. uniprot
Match: A0A7J7IEA1 (MYND-type domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IEA1_9RHOD)

HSP 1 Score: 71.6 bits (174), Expect = 3.650e-10
Identity = 65/231 (28.14%), Postives = 97/231 (41.99%), Query Frame = 0
Query:  216 FLTVLGSDEKVMGFALMPSLHDLRAKYRRAVLNR---------AAQIE--DQPDLRI--------------APDVLVCASCGRTVVEQLDENNRRYVHRCAGCKRLLYCGQACQRRDWFRNHRHEC------KQAAEDSEFVFRRD-----EWAWLKRELACLFVDPTAVPFDDLDGFEQYKWPFAEDQSPPLYPVAFASVQGAAAR---VTLPTKKEIQIMVDVARTLTE 407
            FL VLG +    G   +PS+   R +Y  ++  R         AAQ    D+P   +               PDV++CA  GR +          Y +RC+ CKR  Y     Q+ DW R H  EC      K +A +S  +   D        W   EL  L+++ +A+ FDDLD  E+  WP A   S   +PV F ++ G +     V  P  +E+  M+ +   + E
Sbjct:    5 FLVVLGGNAP--GLVGLPSVRAARKRYAASIRQRIQANTKTGTAAQHNESDEPTAPLYTPSEVVASLSEDDIPDVVLCAHTGRVIPGP-------YAYRCSRCKRAYYVDNEAQKADWQR-HAPECEAIANAKTSASESSILDAHDLSLITRNFWRYAELVHLYMEESALCFDDLDAIEENGWPIAARGS-NAWPVPFVTIGGGSLPRPLVERPNLEELSWMIALMEWILE 224          
BLAST of Ggra8841.t1 vs. uniprot
Match: A0A7S0G222 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G222_9RHOD)

HSP 1 Score: 66.6 bits (161), Expect = 6.600e-10
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 0
Query:   12 ALFERARKLSSPPSKLAYQIVAAQLRVWTTDQN-DVVCRPWYILCLELYPRGSVVNQTLMQPPSRRPSPDDMLSFLLKHIVDPPKDE 97
            A+ ++AR L   P + A+Q    +LR+W  D + D   RP+ +L +ELYPRG+V++  L  P    P P D L  LLK +VDP +DE
Sbjct:   25 AMVKKARALPQTP-RTAWQFGVKRLRLWVWDDDQDRAERPYSMLVMELYPRGTVISNLLASPVGTYPRPTDALYMLLKQMVDPAEDE 110          
The following BLAST results are available for this feature:
BLAST of Ggra8841.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IUG21.890e-23571.46MYND-type domain-containing protein n=1 Tax=Gracil... [more]
R7QKP31.270e-15750.56MYND-type domain-containing protein n=1 Tax=Chondr... [more]
A0A6T6B3W42.380e-7137.77Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NLF11.110e-6634.04MYND-type domain-containing protein n=1 Tax=Porphy... [more]
A0A7S0BIP42.340e-4432.92Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7J7IEA13.650e-1028.14MYND-type domain-containing protein n=1 Tax=Cyanid... [more]
A0A7S0G2226.600e-1041.38Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002893Zinc finger, MYND-typePFAMPF01753zf-MYNDcoord: 268..316
e-value: 3.6E-10
score: 39.8
IPR002893Zinc finger, MYND-typePROSITEPS50865ZF_MYND_2coord: 268..316
score: 12.077983
NoneNo IPR availableGENE3D6.10.140.2220coord: 261..322
e-value: 2.9E-11
score: 44.8
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 265..320

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:482847..484160 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8841.t1Ggra8841.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 482847..484160 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8841.t1 ID=Ggra8841.t1|Name=Ggra8841.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=438bp
MATLALNRSHVALFERARKLSSPPSKLAYQIVAAQLRVWTTDQNDVVCRP
WYILCLELYPRGSVVNQTLMQPPSRRPSPDDMLSFLLKHIVDPPKDESPA
CPTQVSFVDDAVTTALAPHLRRLKIQVETLTLADGLSDYIKRFSDRMIND
DRAMRSESAERPGLLSVPHATPHLLRELMVAATSMHKAQPWQNIPEHVAL
RVLLPADTNERRERFFLTVLGSDEKVMGFALMPSLHDLRAKYRRAVLNRA
AQIEDQPDLRIAPDVLVCASCGRTVVEQLDENNRRYVHRCAGCKRLLYCG
QACQRRDWFRNHRHECKQAAEDSEFVFRRDEWAWLKRELACLFVDPTAVP
FDDLDGFEQYKWPFAEDQSPPLYPVAFASVQGAAARVTLPTKKEIQIMVD
VARTLTECVRTPPKDGVIHFSSGVSLSVAENLADNLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND