Ggra8814.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8814.t1
Unique NameGgra8814.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length390
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:200044..201213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8814Ggra8814Gracilaria gracilis GNS1m malegenetig00000860_pilon 200044..201213 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8814.t1.start1Ggra8814.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 200044..200046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8814.t1.CDS1Ggra8814.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 200044..201213 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8814.t1.exon1Ggra8814.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 200044..201213 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8814.t1.stop1Ggra8814.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 201211..201213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8814.t1Ggra8814.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 200044..201213 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8814.t1 ID=Ggra8814.t1|Name=Ggra8814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=390bp
MSESHQRPLLVTSLRENDNRMEQIEGENFDLKILQWNMNKRAGRHRDSSS
SLIPDAFYDESSDGSRNSNGYTDIMDPDKKIEILKAELNEARDNYEKLLI
EMNEIRQENDELAVEADQKGRDYANLSGDFRKKANELQQRKDEYSKKLGA
LRKELQVERSNASEIKRAAEEARREKDEANRRYEASQKQINEIQIKTDGL
QMEKEVIKAALTDAESSLSREKERSKTKDDALLRAEQLEYETKQISIKER
ALREESEKLVSQKAAELESALRKANQYLNDREAISASLKTELENGKTWEE
ANRMIGDGKMFFAAESEHYVELQKTIQDGESKFADTTKYNPKWREDVAAH
LNACLKMLCFMEAETQARRMYVLKCGSSTTVQEPNVEVA*
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spliced messenger RNA

>Ggra8814.t1 ID=Ggra8814.t1|Name=Ggra8814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000860_pilon:200044..201213+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAATCTCATCAACGACCATTACTGGTCACATCTCTGCGAGAAAA
CGACAATCGCATGGAACAAATCGAAGGCGAAAACTTCGACCTCAAGATAT
TGCAGTGGAATATGAATAAAAGGGCTGGTAGGCACCGCGATTCTTCGTCT
TCATTGATCCCGGATGCGTTTTACGATGAAAGTAGTGATGGCTCCAGGAA
CTCAAATGGATACACAGACATCATGGATCCAGACAAGAAGATAGAAATCC
TCAAGGCGGAACTCAATGAAGCAAGGGATAACTATGAAAAGTTACTCATT
GAGATGAATGAGATCAGACAGGAAAACGACGAACTAGCGGTCGAAGCCGA
TCAGAAGGGGCGGGATTATGCAAATCTTTCTGGTGATTTTCGGAAGAAGG
CGAACGAGTTGCAACAGCGAAAGGACGAATATAGCAAGAAACTTGGCGCC
CTGCGAAAGGAATTACAAGTGGAGAGAAGCAATGCGAGTGAAATCAAGCG
CGCTGCTGAGGAGGCACGGCGCGAGAAAGATGAAGCCAACAGGCGGTATG
AAGCCTCACAGAAGCAGATCAACGAAATACAAATTAAAACCGATGGGCTT
CAAATGGAAAAAGAAGTTATCAAAGCAGCTTTGACAGACGCAGAATCTTC
GCTCTCGAGAGAAAAAGAACGTTCCAAGACAAAGGATGATGCGTTGTTGA
GGGCTGAACAGCTCGAGTACGAGACCAAGCAAATCTCCATCAAAGAGCGA
GCGCTACGAGAAGAATCAGAAAAACTTGTTTCTCAGAAAGCTGCCGAACT
GGAATCAGCGCTGAGGAAGGCGAACCAGTATCTCAACGACCGAGAGGCGA
TTTCGGCGTCATTGAAAACAGAGCTAGAAAATGGGAAGACATGGGAGGAG
GCCAATAGGATGATCGGCGATGGGAAGATGTTCTTTGCCGCAGAGTCGGA
GCATTACGTTGAGCTGCAGAAAACCATTCAAGACGGTGAATCTAAGTTTG
CGGATACTACGAAGTACAATCCCAAATGGCGAGAAGATGTTGCAGCGCAC
CTTAATGCCTGTCTGAAAATGTTGTGCTTCATGGAAGCAGAGACGCAAGC
TCGGAGAATGTATGTCCTCAAGTGTGGCTCTTCGACGACTGTACAGGAAC
CTAACGTCGAGGTTGCATGA
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protein sequence of Ggra8814.t1

>Ggra8814.t1 ID=Ggra8814.t1|Name=Ggra8814.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=390bp
MSESHQRPLLVTSLRENDNRMEQIEGENFDLKILQWNMNKRAGRHRDSSS
SLIPDAFYDESSDGSRNSNGYTDIMDPDKKIEILKAELNEARDNYEKLLI
EMNEIRQENDELAVEADQKGRDYANLSGDFRKKANELQQRKDEYSKKLGA
LRKELQVERSNASEIKRAAEEARREKDEANRRYEASQKQINEIQIKTDGL
QMEKEVIKAALTDAESSLSREKERSKTKDDALLRAEQLEYETKQISIKER
ALREESEKLVSQKAAELESALRKANQYLNDREAISASLKTELENGKTWEE
ANRMIGDGKMFFAAESEHYVELQKTIQDGESKFADTTKYNPKWREDVAAH
LNACLKMLCFMEAETQARRMYVLKCGSSTTVQEPNVEVA*
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mRNA from alignment at tig00000860_pilon:200044..201213+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8814.t1 ID=Ggra8814.t1|Name=Ggra8814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000860_pilon:200044..201213+ (Gracilaria gracilis GNS1m male)
ATGTCAGAATCTCATCAACGACCATTACTGGTCACATCTCTGCGAGAAAA
CGACAATCGCATGGAACAAATCGAAGGCGAAAACTTCGACCTCAAGATAT
TGCAGTGGAATATGAATAAAAGGGCTGGTAGGCACCGCGATTCTTCGTCT
TCATTGATCCCGGATGCGTTTTACGATGAAAGTAGTGATGGCTCCAGGAA
CTCAAATGGATACACAGACATCATGGATCCAGACAAGAAGATAGAAATCC
TCAAGGCGGAACTCAATGAAGCAAGGGATAACTATGAAAAGTTACTCATT
GAGATGAATGAGATCAGACAGGAAAACGACGAACTAGCGGTCGAAGCCGA
TCAGAAGGGGCGGGATTATGCAAATCTTTCTGGTGATTTTCGGAAGAAGG
CGAACGAGTTGCAACAGCGAAAGGACGAATATAGCAAGAAACTTGGCGCC
CTGCGAAAGGAATTACAAGTGGAGAGAAGCAATGCGAGTGAAATCAAGCG
CGCTGCTGAGGAGGCACGGCGCGAGAAAGATGAAGCCAACAGGCGGTATG
AAGCCTCACAGAAGCAGATCAACGAAATACAAATTAAAACCGATGGGCTT
CAAATGGAAAAAGAAGTTATCAAAGCAGCTTTGACAGACGCAGAATCTTC
GCTCTCGAGAGAAAAAGAACGTTCCAAGACAAAGGATGATGCGTTGTTGA
GGGCTGAACAGCTCGAGTACGAGACCAAGCAAATCTCCATCAAAGAGCGA
GCGCTACGAGAAGAATCAGAAAAACTTGTTTCTCAGAAAGCTGCCGAACT
GGAATCAGCGCTGAGGAAGGCGAACCAGTATCTCAACGACCGAGAGGCGA
TTTCGGCGTCATTGAAAACAGAGCTAGAAAATGGGAAGACATGGGAGGAG
GCCAATAGGATGATCGGCGATGGGAAGATGTTCTTTGCCGCAGAGTCGGA
GCATTACGTTGAGCTGCAGAAAACCATTCAAGACGGTGAATCTAAGTTTG
CGGATACTACGAAGTACAATCCCAAATGGCGAGAAGATGTTGCAGCGCAC
CTTAATGCCTGTCTGAAAATGTTGTGCTTCATGGAAGCAGAGACGCAAGC
TCGGAGAATGTATGTCCTCAAGTGTGGCTCTTCGACGACTGTACAGGAAC
CTAACGTCGAGGTTGCATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:200044..201213+

>Ggra8814.t1 ID=Ggra8814.t1|Name=Ggra8814.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1170bp|location=Sequence derived from alignment at tig00000860_pilon:200044..201213+ (Gracilaria gracilis GNS1m male)
ATGTCAGAATCTCATCAACGACCATTACTGGTCACATCTCTGCGAGAAAA
CGACAATCGCATGGAACAAATCGAAGGCGAAAACTTCGACCTCAAGATAT
TGCAGTGGAATATGAATAAAAGGGCTGGTAGGCACCGCGATTCTTCGTCT
TCATTGATCCCGGATGCGTTTTACGATGAAAGTAGTGATGGCTCCAGGAA
CTCAAATGGATACACAGACATCATGGATCCAGACAAGAAGATAGAAATCC
TCAAGGCGGAACTCAATGAAGCAAGGGATAACTATGAAAAGTTACTCATT
GAGATGAATGAGATCAGACAGGAAAACGACGAACTAGCGGTCGAAGCCGA
TCAGAAGGGGCGGGATTATGCAAATCTTTCTGGTGATTTTCGGAAGAAGG
CGAACGAGTTGCAACAGCGAAAGGACGAATATAGCAAGAAACTTGGCGCC
CTGCGAAAGGAATTACAAGTGGAGAGAAGCAATGCGAGTGAAATCAAGCG
CGCTGCTGAGGAGGCACGGCGCGAGAAAGATGAAGCCAACAGGCGGTATG
AAGCCTCACAGAAGCAGATCAACGAAATACAAATTAAAACCGATGGGCTT
CAAATGGAAAAAGAAGTTATCAAAGCAGCTTTGACAGACGCAGAATCTTC
GCTCTCGAGAGAAAAAGAACGTTCCAAGACAAAGGATGATGCGTTGTTGA
GGGCTGAACAGCTCGAGTACGAGACCAAGCAAATCTCCATCAAAGAGCGA
GCGCTACGAGAAGAATCAGAAAAACTTGTTTCTCAGAAAGCTGCCGAACT
GGAATCAGCGCTGAGGAAGGCGAACCAGTATCTCAACGACCGAGAGGCGA
TTTCGGCGTCATTGAAAACAGAGCTAGAAAATGGGAAGACATGGGAGGAG
GCCAATAGGATGATCGGCGATGGGAAGATGTTCTTTGCCGCAGAGTCGGA
GCATTACGTTGAGCTGCAGAAAACCATTCAAGACGGTGAATCTAAGTTTG
CGGATACTACGAAGTACAATCCCAAATGGCGAGAAGATGTTGCAGCGCAC
CTTAATGCCTGTCTGAAAATGTTGTGCTTCATGGAAGCAGAGACGCAAGC
TCGGAGAATGTATGTCCTCAAGTGTGGCTCTTCGACGACTGTACAGGAAC
CTAACGTCGAGGTTGCATGA
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