Ggra8801.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8801.t1
Unique Name	Ggra8801.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:165061..166563 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4006.Lus10031420
PFAMs	Kelch_3,Kelch_4
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20285
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0010008,GO:0012505,GO:0016020,GO:0031090,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098588,GO:0098805
Evalue	4.26e-10
EggNOG OGs	KOG0379@1\|root,KOG0379@2759\|Eukaryota,37NTE@33090\|Viridiplantae,3GF5R@35493\|Streptophyta,4JKKV@91835\|fabids
Description	Kelch motif
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8801	Ggra8801	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 165061..166563 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8801.t1.start1	Ggra8801.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 165061..165063 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8801.t1.CDS1	Ggra8801.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 165061..166563 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8801.t1.exon1	Ggra8801.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 165061..166563 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8801.t1.stop1	Ggra8801.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 166561..166563 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8801.t1	Ggra8801.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 165061..166563 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:165061..166563+
coding sequence from alignment at tig00000860_pilon:165061..166563+

mRNA sequence

>Ggra8801.t1 ID=Ggra8801.t1|Name=Ggra8801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp
MTNLLDTPIVLVFAGEDESGHLLNDMYALHVERREWKQISYAPGPRPLPR
LLHTAVAISSTLLVVIGGDTWESTDSPEAKISPTTALNDIWVFDYSDSSW
QQIEDTGSIKLPFLSCSSAVFGRAKSQVPGVYIFGGYSRDKTYFNVVYRL
RISDWKLEVLPHVEKDANGKKRIIDSNGDDGLKENEQHGERIIPRDRESH
GAIWLPGIGMLVVGGDGGVSILGDCWLFCQHPDDLQSWRWQELRLVPAGN
RPGNKLPRLAGHSLLSLPTNTLKVMVWGGILNTGQDVMASNVSYIIDLDK
ANIAQTVRVTNTGRAPKTGRILHGLIRSRDMLFAFGGCDSDGNIQIGTQH
GRLLPNFKAPNEAASYFGSEATKMAIHGTHSEKSDEDNMKSTEAEGKKGS
STSAARTPLTGKVLEVMDMGLLVSIEIGGKPFKGVLVAHEAQKDSSMIDV
SGEKQKANGQKSKSSDIKPSKRPKLDAAAEALPDSPSKLRPKRAEVIDIE
*

spliced messenger RNA

>Ggra8801.t1 ID=Ggra8801.t1|Name=Ggra8801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000860_pilon:165061..166563+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAACCTGCTCGACACTCCAATTGTTCTTGTTTTTGCTGGAGAGGA
CGAATCCGGTCACCTCCTTAATGATATGTACGCTCTTCATGTCGAACGAC
GCGAATGGAAGCAAATTAGCTATGCACCAGGCCCGAGGCCACTCCCACGG
TTGCTACACACCGCCGTGGCAATATCATCCACTTTGCTGGTCGTTATCGG
AGGTGACACATGGGAATCTACTGACTCTCCAGAGGCAAAGATATCTCCCA
CCACCGCACTGAATGATATATGGGTTTTCGATTACAGCGATAGCTCATGG
CAGCAGATCGAGGATACAGGCTCTATAAAACTACCCTTCCTTAGCTGTTC
CTCAGCAGTGTTTGGACGGGCGAAGAGTCAAGTTCCAGGTGTTTACATTT
TTGGCGGTTACAGCCGCGACAAGACGTATTTCAACGTAGTGTACCGGTTG
AGAATTAGCGATTGGAAACTAGAAGTTCTCCCACATGTCGAGAAGGATGC
AAACGGGAAGAAAAGGATCATTGACAGCAACGGCGATGATGGCTTAAAAG
AAAATGAGCAACATGGTGAACGGATAATACCAAGGGATAGGGAGTCACAT
GGAGCAATATGGCTCCCAGGAATCGGTATGCTTGTCGTTGGCGGGGATGG
GGGGGTATCAATTCTTGGAGATTGCTGGTTATTTTGCCAACATCCTGATG
ACCTTCAGTCATGGAGATGGCAAGAGCTGCGCCTTGTTCCCGCCGGGAAT
CGTCCGGGAAACAAGCTTCCTCGATTGGCGGGACATTCTCTTCTTTCCTT
ACCGACAAATACATTGAAAGTAATGGTGTGGGGAGGAATTCTAAACACTG
GGCAAGATGTTATGGCTTCTAATGTCTCATACATTATTGACCTGGACAAA
GCAAATATCGCGCAAACGGTTCGAGTTACAAATACCGGAAGGGCACCCAA
GACAGGAAGAATACTTCACGGACTTATAAGATCCAGGGATATGCTGTTTG
CTTTTGGCGGCTGTGACTCAGATGGAAATATACAGATTGGGACACAACAT
GGTCGACTCTTGCCCAACTTCAAAGCACCGAATGAAGCCGCCAGCTATTT
TGGATCAGAAGCAACGAAAATGGCAATACATGGCACACACTCCGAGAAGA
GCGATGAAGATAACATGAAGTCGACCGAAGCCGAGGGAAAGAAGGGGTCA
TCTACTAGCGCCGCTCGCACTCCCTTAACAGGAAAGGTGTTGGAAGTCAT
GGATATGGGACTATTGGTGTCCATAGAAATCGGTGGAAAACCGTTTAAGG
GAGTGCTTGTTGCCCATGAAGCACAGAAAGATTCATCGATGATCGACGTT
TCTGGTGAGAAGCAAAAAGCGAATGGACAGAAGAGCAAAAGTAGCGATAT
CAAGCCGAGCAAGCGACCGAAACTTGATGCCGCTGCAGAAGCTCTTCCCG
ACTCTCCGTCTAAACTGCGGCCAAAACGAGCCGAAGTGATTGATATAGAA
TAA

protein sequence of Ggra8801.t1

>Ggra8801.t1 ID=Ggra8801.t1|Name=Ggra8801.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=501bp
MTNLLDTPIVLVFAGEDESGHLLNDMYALHVERREWKQISYAPGPRPLPR
LLHTAVAISSTLLVVIGGDTWESTDSPEAKISPTTALNDIWVFDYSDSSW
QQIEDTGSIKLPFLSCSSAVFGRAKSQVPGVYIFGGYSRDKTYFNVVYRL
RISDWKLEVLPHVEKDANGKKRIIDSNGDDGLKENEQHGERIIPRDRESH
GAIWLPGIGMLVVGGDGGVSILGDCWLFCQHPDDLQSWRWQELRLVPAGN
RPGNKLPRLAGHSLLSLPTNTLKVMVWGGILNTGQDVMASNVSYIIDLDK
ANIAQTVRVTNTGRAPKTGRILHGLIRSRDMLFAFGGCDSDGNIQIGTQH
GRLLPNFKAPNEAASYFGSEATKMAIHGTHSEKSDEDNMKSTEAEGKKGS
STSAARTPLTGKVLEVMDMGLLVSIEIGGKPFKGVLVAHEAQKDSSMIDV
SGEKQKANGQKSKSSDIKPSKRPKLDAAAEALPDSPSKLRPKRAEVIDIE
*

mRNA from alignment at tig00000860_pilon:165061..166563+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8801.t1 ID=Ggra8801.t1|Name=Ggra8801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000860_pilon:165061..166563+ (Gracilaria gracilis GNS1m male)
ATGACGAACCTGCTCGACACTCCAATTGTTCTTGTTTTTGCTGGAGAGGA
CGAATCCGGTCACCTCCTTAATGATATGTACGCTCTTCATGTCGAACGAC
GCGAATGGAAGCAAATTAGCTATGCACCAGGCCCGAGGCCACTCCCACGG
TTGCTACACACCGCCGTGGCAATATCATCCACTTTGCTGGTCGTTATCGG
AGGTGACACATGGGAATCTACTGACTCTCCAGAGGCAAAGATATCTCCCA
CCACCGCACTGAATGATATATGGGTTTTCGATTACAGCGATAGCTCATGG
CAGCAGATCGAGGATACAGGCTCTATAAAACTACCCTTCCTTAGCTGTTC
CTCAGCAGTGTTTGGACGGGCGAAGAGTCAAGTTCCAGGTGTTTACATTT
TTGGCGGTTACAGCCGCGACAAGACGTATTTCAACGTAGTGTACCGGTTG
AGAATTAGCGATTGGAAACTAGAAGTTCTCCCACATGTCGAGAAGGATGC
AAACGGGAAGAAAAGGATCATTGACAGCAACGGCGATGATGGCTTAAAAG
AAAATGAGCAACATGGTGAACGGATAATACCAAGGGATAGGGAGTCACAT
GGAGCAATATGGCTCCCAGGAATCGGTATGCTTGTCGTTGGCGGGGATGG
GGGGGTATCAATTCTTGGAGATTGCTGGTTATTTTGCCAACATCCTGATG
ACCTTCAGTCATGGAGATGGCAAGAGCTGCGCCTTGTTCCCGCCGGGAAT
CGTCCGGGAAACAAGCTTCCTCGATTGGCGGGACATTCTCTTCTTTCCTT
ACCGACAAATACATTGAAAGTAATGGTGTGGGGAGGAATTCTAAACACTG
GGCAAGATGTTATGGCTTCTAATGTCTCATACATTATTGACCTGGACAAA
GCAAATATCGCGCAAACGGTTCGAGTTACAAATACCGGAAGGGCACCCAA
GACAGGAAGAATACTTCACGGACTTATAAGATCCAGGGATATGCTGTTTG
CTTTTGGCGGCTGTGACTCAGATGGAAATATACAGATTGGGACACAACAT
GGTCGACTCTTGCCCAACTTCAAAGCACCGAATGAAGCCGCCAGCTATTT
TGGATCAGAAGCAACGAAAATGGCAATACATGGCACACACTCCGAGAAGA
GCGATGAAGATAACATGAAGTCGACCGAAGCCGAGGGAAAGAAGGGGTCA
TCTACTAGCGCCGCTCGCACTCCCTTAACAGGAAAGGTGTTGGAAGTCAT
GGATATGGGACTATTGGTGTCCATAGAAATCGGTGGAAAACCGTTTAAGG
GAGTGCTTGTTGCCCATGAAGCACAGAAAGATTCATCGATGATCGACGTT
TCTGGTGAGAAGCAAAAAGCGAATGGACAGAAGAGCAAAAGTAGCGATAT
CAAGCCGAGCAAGCGACCGAAACTTGATGCCGCTGCAGAAGCTCTTCCCG
ACTCTCCGTCTAAACTGCGGCCAAAACGAGCCGAAGTGATTGATATAGAA
TAA

Coding sequence (CDS) from alignment at tig00000860_pilon:165061..166563+

>Ggra8801.t1 ID=Ggra8801.t1|Name=Ggra8801.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00000860_pilon:165061..166563+ (Gracilaria gracilis GNS1m male)
ATGACGAACCTGCTCGACACTCCAATTGTTCTTGTTTTTGCTGGAGAGGA
CGAATCCGGTCACCTCCTTAATGATATGTACGCTCTTCATGTCGAACGAC
GCGAATGGAAGCAAATTAGCTATGCACCAGGCCCGAGGCCACTCCCACGG
TTGCTACACACCGCCGTGGCAATATCATCCACTTTGCTGGTCGTTATCGG
AGGTGACACATGGGAATCTACTGACTCTCCAGAGGCAAAGATATCTCCCA
CCACCGCACTGAATGATATATGGGTTTTCGATTACAGCGATAGCTCATGG
CAGCAGATCGAGGATACAGGCTCTATAAAACTACCCTTCCTTAGCTGTTC
CTCAGCAGTGTTTGGACGGGCGAAGAGTCAAGTTCCAGGTGTTTACATTT
TTGGCGGTTACAGCCGCGACAAGACGTATTTCAACGTAGTGTACCGGTTG
AGAATTAGCGATTGGAAACTAGAAGTTCTCCCACATGTCGAGAAGGATGC
AAACGGGAAGAAAAGGATCATTGACAGCAACGGCGATGATGGCTTAAAAG
AAAATGAGCAACATGGTGAACGGATAATACCAAGGGATAGGGAGTCACAT
GGAGCAATATGGCTCCCAGGAATCGGTATGCTTGTCGTTGGCGGGGATGG
GGGGGTATCAATTCTTGGAGATTGCTGGTTATTTTGCCAACATCCTGATG
ACCTTCAGTCATGGAGATGGCAAGAGCTGCGCCTTGTTCCCGCCGGGAAT
CGTCCGGGAAACAAGCTTCCTCGATTGGCGGGACATTCTCTTCTTTCCTT
ACCGACAAATACATTGAAAGTAATGGTGTGGGGAGGAATTCTAAACACTG
GGCAAGATGTTATGGCTTCTAATGTCTCATACATTATTGACCTGGACAAA
GCAAATATCGCGCAAACGGTTCGAGTTACAAATACCGGAAGGGCACCCAA
GACAGGAAGAATACTTCACGGACTTATAAGATCCAGGGATATGCTGTTTG
CTTTTGGCGGCTGTGACTCAGATGGAAATATACAGATTGGGACACAACAT
GGTCGACTCTTGCCCAACTTCAAAGCACCGAATGAAGCCGCCAGCTATTT
TGGATCAGAAGCAACGAAAATGGCAATACATGGCACACACTCCGAGAAGA
GCGATGAAGATAACATGAAGTCGACCGAAGCCGAGGGAAAGAAGGGGTCA
TCTACTAGCGCCGCTCGCACTCCCTTAACAGGAAAGGTGTTGGAAGTCAT
GGATATGGGACTATTGGTGTCCATAGAAATCGGTGGAAAACCGTTTAAGG
GAGTGCTTGTTGCCCATGAAGCACAGAAAGATTCATCGATGATCGACGTT
TCTGGTGAGAAGCAAAAAGCGAATGGACAGAAGAGCAAAAGTAGCGATAT
CAAGCCGAGCAAGCGACCGAAACTTGATGCCGCTGCAGAAGCTCTTCCCG
ACTCTCCGTCTAAACTGCGGCCAAAACGAGCCGAAGTGATTGATATAGAA
TAA