Ggra8766.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8766.t1
Unique NameGgra8766.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:73081..73842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog113608.XP_003684878.1
Preferred nameTCB1
PFAMsC2
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0005938,GO:0006996,GO:0007029,GO:0008150,GO:0008289,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0019216,GO:0019220,GO:0019222,GO:0022406,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032541,GO:0035303,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0050789,GO:0050794,GO:0051174,GO:0051179,GO:0051286,GO:0051640,GO:0051641,GO:0051643,GO:0060255,GO:0060304,GO:0061024,GO:0061817,GO:0065007,GO:0071782,GO:0071840,GO:0071944,GO:0080090,GO:0090158,GO:0097708,GO:0098827,GO:0099568,GO:0140056,GO:1903725
Evalue7.39e-05
EggNOG OGsCOG5038@1|root,KOG1012@2759|Eukaryota,38DXC@33154|Opisthokonta,3NU87@4751|Fungi,3QJI2@4890|Ascomycota,3RRKK@4891|Saccharomycetes,3S066@4893|Saccharomycetaceae
Descriptionto Saccharomyces cerevisiae TCB2 (YNL087W) and TCB1 (YOR086C)
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8766Ggra8766Gracilaria gracilis GNS1m malegenetig00000860_pilon 73081..73842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8766.t1Ggra8766.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 73081..73842 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8766.t1.start1Ggra8766.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 73081..73083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8766.t1.CDS1Ggra8766.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 73081..73179 +
Ggra8766.t1.CDS2Ggra8766.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 73287..73405 +
Ggra8766.t1.CDS3Ggra8766.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 73650..73842 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8766.t1.exon1Ggra8766.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 73081..73179 +
Ggra8766.t1.exon2Ggra8766.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 73287..73405 +
Ggra8766.t1.exon3Ggra8766.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 73650..73842 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8766.t1.intron1Ggra8766.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 73180..73286 +
Ggra8766.t1.intron2Ggra8766.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 73406..73649 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8766.t1.stop1Ggra8766.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 73840..73842 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8766.t1 ID=Ggra8766.t1|Name=Ggra8766.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=137bp
MTEVEGKISIWIKSGNFSHASDLYINLFIDDNEIWKTEEKDGFSPDFDST
CVKHIKGDYEKIIIKLMDEDTCDRDDVIGTAEFTIADLLDDGINDDVSLC
DADGNEVGTLGVNINFEPGDVNAFQLFGSMLHKGGD*
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spliced messenger RNA

>Ggra8766.t1 ID=Ggra8766.t1|Name=Ggra8766.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000860_pilon:73081..73842+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGAAGTGGAGGGAAAGATTAGCATCTGGATCAAGTCCGGCAACTT
CAGCCACGCCAGCGACCTGTACATTAACCTCTTCATCGACGACAATGAGA
TCTGGAAGACTGAGGAGAAGGACGGTTTCTCCCCGGACTTTGACTCCACT
TGCGTCAAGCATATCAAGGGCGATTACGAAAAGATCATCATCAAACTCAT
GGATGAGGATACCTGTGATCGTGATGACGTGATTGGCACCGCCGAGTTCA
CCATCGCCGACTTGCTCGACGATGGAATCAACGACGATGTGAGCTTGTGC
GACGCGGACGGCAACGAGGTCGGAACGCTCGGCGTCAACATCAACTTTGA
GCCAGGAGATGTGAACGCATTCCAGCTGTTCGGATCAATGCTTCACAAGG
GCGGCGACTAG
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protein sequence of Ggra8766.t1

>Ggra8766.t1 ID=Ggra8766.t1|Name=Ggra8766.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=137bp
MTEVEGKISIWIKSGNFSHASDLYINLFIDDNEIWKTEEKDGFSPDFDST
CVKHIKGDYEKIIIKLMDEDTCDRDDVIGTAEFTIADLLDDGINDDVSLC
DADGNEVGTLGVNINFEPGDVNAFQLFGSMLHKGGD*
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mRNA from alignment at tig00000860_pilon:73081..73842+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8766.t1 ID=Ggra8766.t1|Name=Ggra8766.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000860_pilon:73081..73842+ (Gracilaria gracilis GNS1m male)
ATGACTGAAGTGGAGGGAAAGATTAGCATCTGGATCAAGTCCGGCAACTT
CAGCCACGCCAGCGACCTGTACATTAACCTCTTCATCGACGACAATGAGG
TACGTCACCCACCCCATCCGTTGCTTCCAGCACCAACCCTTTTGCTCACC
CGTTCTGTCTTGCTCACAACCCCTTCTCTCATCCCTTCTTGTTCCACGCC
GCGTAGATCTGGAAGACTGAGGAGAAGGACGGTTTCTCCCCGGACTTTGA
CTCCACTTGCGTCAAGCATATCAAGGGCGATTACGAAAAGATCATCATCA
AACTCATGGATGAGGATACCTGTGAGTGCTACTCTCTCCCACCGCTTGCC
AATTCACCCTGCCACGCACCACACAACACCTCTTCTAACCAGCTTCTGCG
TTGCCTCCTCCTCTCTCTACCCAAACCACCATTCGTTCAATGTTGCAAGT
CTCGTAAGTTTTCATCAGCTCAAAAAAGTACCCTGCTCAACTCAACCATC
GCCCTCTCTAACCACAACCCACACTCTCGTCGCATTTTCGTTCGCGTTTT
CGTTCGCATTTTGCAACAGTCGTGATGACGTGATTGGCACCGCCGAGTTC
ACCATCGCCGACTTGCTCGACGATGGAATCAACGACGATGTGAGCTTGTG
CGACGCGGACGGCAACGAGGTCGGAACGCTCGGCGTCAACATCAACTTTG
AGCCAGGAGATGTGAACGCATTCCAGCTGTTCGGATCAATGCTTCACAAG
GGCGGCGACTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:73081..73842+

>Ggra8766.t1 ID=Ggra8766.t1|Name=Ggra8766.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00000860_pilon:73081..73842+ (Gracilaria gracilis GNS1m male)
ATGACTGAAGTGGAGGGAAAGATTAGCATCTGGATCAAGTCCGGCAACTT
CAGCCACGCCAGCGACCTGTACATTAACCTCTTCATCGACGACAATGAGA
TCTGGAAGACTGAGGAGAAGGACGGTTTCTCCCCGGACTTTGACTCCACT
TGCGTCAAGCATATCAAGGGCGATTACGAAAAGATCATCATCAAACTCAT
GGATGAGGATACCTGTGATCGTGATGACGTGATTGGCACCGCCGAGTTCA
CCATCGCCGACTTGCTCGACGATGGAATCAACGACGATGTGAGCTTGTGC
GACGCGGACGGCAACGAGGTCGGAACGCTCGGCGTCAACATCAACTTTGA
GCCAGGAGATGTGAACGCATTCCAGCTGTTCGGATCAATGCTTCACAAGG
GCGGCGACTAG
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