Ggra8764.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8764.t1
Unique NameGgra8764.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:68264..69349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD125CT
PFAMsDnaJ,DnaJ_C
Max annot lvl2759|Eukaryota
KEGG koko:K09510,ko:K09511
Evalue8.35e-38
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota
Descriptionprotein folding
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8764Ggra8764Gracilaria gracilis GNS1m malegenetig00000860_pilon 68264..69349 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8764.t1.start1Ggra8764.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 68264..68266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8764.t1.CDS1Ggra8764.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 68264..69349 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8764.t1.exon1Ggra8764.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 68264..69349 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8764.t1.stop1Ggra8764.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 69347..69349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8764.t1Ggra8764.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 68264..69349 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8764.t1 ID=Ggra8764.t1|Name=Ggra8764.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MQLASSSAFISPVPVVNRAANLPARSARRPARRPRAFVSRRCTVVCTANP
YDVLGVPRDADAATIKRAYRRAALKNHPDVSKEPDARDRFMRIQEAYAML
SDASKRASYDRQRATSSGFNSFAKGFGFDFDAAQYAKKWRDSNPMPDDIN
DNLGSIFSDLFSGVAGAVGSNGVVEDFVEFLEKQVDGFGSGGDDSLNEVL
NSSDVDVLETEIEDAKFVLRQLRSRKSRVEDEEENLRQRARDWRRRADRA
DDRKDYSVRDAAREREQELLKDADRFAKRATKAASLVRKQEQRLEKIEDR
LDYVRNKKKEETASRKSRAARRSTSDDTNGSGRKPVSEVRSKSQQAAIDD
ELQKMKRELGL*
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spliced messenger RNA

>Ggra8764.t1 ID=Ggra8764.t1|Name=Ggra8764.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000860_pilon:68264..69349+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTTGCCAGTAGTTCCGCCTTCATTTCGCCCGTGCCAGTTGTGAA
TCGGGCTGCCAATTTGCCGGCGCGCTCTGCGCGTCGACCTGCGCGCCGCC
CGCGCGCGTTTGTATCACGTCGCTGTACCGTCGTGTGCACGGCAAACCCG
TACGACGTACTGGGCGTTCCGAGAGATGCGGATGCGGCCACCATCAAACG
TGCGTACCGACGAGCCGCTCTCAAGAATCATCCCGACGTGAGCAAAGAGC
CTGACGCGCGCGATCGTTTCATGAGGATTCAGGAGGCGTATGCCATGCTG
TCCGACGCTAGCAAGCGCGCGTCGTATGACAGACAGCGTGCTACGTCTTC
TGGCTTTAATTCGTTTGCAAAGGGTTTTGGATTTGACTTTGACGCTGCTC
AGTATGCTAAGAAATGGCGCGATTCTAACCCTATGCCGGACGATATCAAC
GATAACCTTGGAAGCATTTTCTCTGATTTGTTCTCTGGCGTGGCTGGTGC
CGTCGGTTCCAATGGCGTGGTTGAGGATTTTGTTGAGTTTTTGGAAAAGC
AGGTTGACGGCTTTGGAAGCGGTGGAGATGATAGTCTCAATGAGGTGCTC
AACAGCTCCGACGTTGATGTTCTTGAAACTGAAATTGAGGACGCCAAGTT
CGTACTGAGGCAGCTTCGCTCCAGAAAAAGCAGAGTTGAGGACGAGGAAG
AGAACCTTCGACAGCGTGCCAGAGATTGGAGAAGGCGTGCCGACCGCGCC
GATGACCGAAAAGATTACAGCGTGCGTGACGCGGCGCGCGAACGAGAGCA
AGAGCTACTGAAAGATGCCGACCGGTTTGCAAAGCGGGCCACCAAAGCAG
CCTCGCTGGTACGAAAGCAGGAACAGCGCCTGGAGAAGATTGAAGACAGG
CTGGACTACGTGCGAAACAAAAAGAAGGAAGAGACAGCCTCTCGCAAGAG
CCGGGCGGCGAGGAGATCCACGTCTGACGATACGAATGGCAGTGGAAGAA
AGCCCGTTTCAGAGGTGCGGAGCAAGTCGCAGCAAGCCGCCATTGACGAC
GAACTGCAGAAGATGAAACGAGAGCTTGGATTGTGA
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protein sequence of Ggra8764.t1

>Ggra8764.t1 ID=Ggra8764.t1|Name=Ggra8764.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MQLASSSAFISPVPVVNRAANLPARSARRPARRPRAFVSRRCTVVCTANP
YDVLGVPRDADAATIKRAYRRAALKNHPDVSKEPDARDRFMRIQEAYAML
SDASKRASYDRQRATSSGFNSFAKGFGFDFDAAQYAKKWRDSNPMPDDIN
DNLGSIFSDLFSGVAGAVGSNGVVEDFVEFLEKQVDGFGSGGDDSLNEVL
NSSDVDVLETEIEDAKFVLRQLRSRKSRVEDEEENLRQRARDWRRRADRA
DDRKDYSVRDAAREREQELLKDADRFAKRATKAASLVRKQEQRLEKIEDR
LDYVRNKKKEETASRKSRAARRSTSDDTNGSGRKPVSEVRSKSQQAAIDD
ELQKMKRELGL*
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mRNA from alignment at tig00000860_pilon:68264..69349+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8764.t1 ID=Ggra8764.t1|Name=Ggra8764.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000860_pilon:68264..69349+ (Gracilaria gracilis GNS1m male)
ATGCAGCTTGCCAGTAGTTCCGCCTTCATTTCGCCCGTGCCAGTTGTGAA
TCGGGCTGCCAATTTGCCGGCGCGCTCTGCGCGTCGACCTGCGCGCCGCC
CGCGCGCGTTTGTATCACGTCGCTGTACCGTCGTGTGCACGGCAAACCCG
TACGACGTACTGGGCGTTCCGAGAGATGCGGATGCGGCCACCATCAAACG
TGCGTACCGACGAGCCGCTCTCAAGAATCATCCCGACGTGAGCAAAGAGC
CTGACGCGCGCGATCGTTTCATGAGGATTCAGGAGGCGTATGCCATGCTG
TCCGACGCTAGCAAGCGCGCGTCGTATGACAGACAGCGTGCTACGTCTTC
TGGCTTTAATTCGTTTGCAAAGGGTTTTGGATTTGACTTTGACGCTGCTC
AGTATGCTAAGAAATGGCGCGATTCTAACCCTATGCCGGACGATATCAAC
GATAACCTTGGAAGCATTTTCTCTGATTTGTTCTCTGGCGTGGCTGGTGC
CGTCGGTTCCAATGGCGTGGTTGAGGATTTTGTTGAGTTTTTGGAAAAGC
AGGTTGACGGCTTTGGAAGCGGTGGAGATGATAGTCTCAATGAGGTGCTC
AACAGCTCCGACGTTGATGTTCTTGAAACTGAAATTGAGGACGCCAAGTT
CGTACTGAGGCAGCTTCGCTCCAGAAAAAGCAGAGTTGAGGACGAGGAAG
AGAACCTTCGACAGCGTGCCAGAGATTGGAGAAGGCGTGCCGACCGCGCC
GATGACCGAAAAGATTACAGCGTGCGTGACGCGGCGCGCGAACGAGAGCA
AGAGCTACTGAAAGATGCCGACCGGTTTGCAAAGCGGGCCACCAAAGCAG
CCTCGCTGGTACGAAAGCAGGAACAGCGCCTGGAGAAGATTGAAGACAGG
CTGGACTACGTGCGAAACAAAAAGAAGGAAGAGACAGCCTCTCGCAAGAG
CCGGGCGGCGAGGAGATCCACGTCTGACGATACGAATGGCAGTGGAAGAA
AGCCCGTTTCAGAGGTGCGGAGCAAGTCGCAGCAAGCCGCCATTGACGAC
GAACTGCAGAAGATGAAACGAGAGCTTGGATTGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:68264..69349+

>Ggra8764.t1 ID=Ggra8764.t1|Name=Ggra8764.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000860_pilon:68264..69349+ (Gracilaria gracilis GNS1m male)
ATGCAGCTTGCCAGTAGTTCCGCCTTCATTTCGCCCGTGCCAGTTGTGAA
TCGGGCTGCCAATTTGCCGGCGCGCTCTGCGCGTCGACCTGCGCGCCGCC
CGCGCGCGTTTGTATCACGTCGCTGTACCGTCGTGTGCACGGCAAACCCG
TACGACGTACTGGGCGTTCCGAGAGATGCGGATGCGGCCACCATCAAACG
TGCGTACCGACGAGCCGCTCTCAAGAATCATCCCGACGTGAGCAAAGAGC
CTGACGCGCGCGATCGTTTCATGAGGATTCAGGAGGCGTATGCCATGCTG
TCCGACGCTAGCAAGCGCGCGTCGTATGACAGACAGCGTGCTACGTCTTC
TGGCTTTAATTCGTTTGCAAAGGGTTTTGGATTTGACTTTGACGCTGCTC
AGTATGCTAAGAAATGGCGCGATTCTAACCCTATGCCGGACGATATCAAC
GATAACCTTGGAAGCATTTTCTCTGATTTGTTCTCTGGCGTGGCTGGTGC
CGTCGGTTCCAATGGCGTGGTTGAGGATTTTGTTGAGTTTTTGGAAAAGC
AGGTTGACGGCTTTGGAAGCGGTGGAGATGATAGTCTCAATGAGGTGCTC
AACAGCTCCGACGTTGATGTTCTTGAAACTGAAATTGAGGACGCCAAGTT
CGTACTGAGGCAGCTTCGCTCCAGAAAAAGCAGAGTTGAGGACGAGGAAG
AGAACCTTCGACAGCGTGCCAGAGATTGGAGAAGGCGTGCCGACCGCGCC
GATGACCGAAAAGATTACAGCGTGCGTGACGCGGCGCGCGAACGAGAGCA
AGAGCTACTGAAAGATGCCGACCGGTTTGCAAAGCGGGCCACCAAAGCAG
CCTCGCTGGTACGAAAGCAGGAACAGCGCCTGGAGAAGATTGAAGACAGG
CTGGACTACGTGCGAAACAAAAAGAAGGAAGAGACAGCCTCTCGCAAGAG
CCGGGCGGCGAGGAGATCCACGTCTGACGATACGAATGGCAGTGGAAGAA
AGCCCGTTTCAGAGGTGCGGAGCAAGTCGCAGCAAGCCGCCATTGACGAC
GAACTGCAGAAGATGAAACGAGAGCTTGGATTGTGA
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