Ggra8747.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8747.t1
Unique Name	Ggra8747.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	245

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000127_pilon	contig	tig00000127_pilon:82540..83274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709361.1
Preferred name	TRRAP
PFAMs	FAT,FATC,PI3_PI4_kinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08874
KEGG Pathway	ko05166,map05166
GOs	GO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
Evalue	1.78e-11
EggNOG OGs	COG5032@1\|root,KOG0889@2759\|Eukaryota
Description	internal peptidyl-lysine acetylation
COG category	BDLTU
BRITE	ko00000,ko00001,ko01001,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8747	Ggra8747	Gracilaria gracilis GNS1m male	gene	tig00000127_pilon 82540..83274 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8747.t1.start1	Ggra8747.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000127_pilon 82540..82542 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8747.t1.CDS1	Ggra8747.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000127_pilon 82540..83274 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8747.t1.exon1	Ggra8747.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000127_pilon 82540..83274 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8747.t1.stop1	Ggra8747.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000127_pilon 83272..83274 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8747.t1	Ggra8747.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000127_pilon 82540..83274 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000127_pilon:82540..83274+
coding sequence from alignment at tig00000127_pilon:82540..83274+

mRNA sequence

>Ggra8747.t1 ID=Ggra8747.t1|Name=Ggra8747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MDHLSARQRAQLFSLKGKLLAQLGREDESVEAISTALFTSADVGSAWLSW
GEHCDDMQKKAAEDPSAFASFADNIDSDDKQIEELMGVSNGYAAELAFSE
SAVKCYLKAVRFGSRRARAFLSRVLRLLSLDVQSRLSFEFTTSRLIEHQS
SLTPSASKTGQLNTGAKAEQGTQKTAAPISATGQDNGNADKQKGVSSQAE
PNKTGLLSSERKGVSRALKCGNLGRTVVDVAAVAFTAIANVGEN*

spliced messenger RNA

>Ggra8747.t1 ID=Ggra8747.t1|Name=Ggra8747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000127_pilon:82540..83274+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCATTTAAGCGCAAGACAGAGGGCTCAGTTGTTTTCGCTGAAGGG
AAAGCTGTTAGCCCAACTGGGAAGGGAAGATGAGTCAGTCGAAGCTATAT
CCACGGCCCTTTTCACCTCTGCAGATGTTGGATCCGCATGGCTTTCTTGG
GGTGAACATTGTGACGATATGCAAAAGAAGGCAGCAGAAGATCCATCGGC
ATTCGCATCTTTCGCAGATAATATAGATTCTGACGATAAGCAAATAGAAG
AGCTGATGGGGGTCAGCAATGGCTATGCCGCCGAGCTGGCCTTCAGCGAA
TCTGCTGTGAAATGTTACCTGAAGGCTGTGCGCTTCGGCTCACGGAGAGC
TCGAGCATTCTTGTCACGGGTTCTTCGACTCTTAAGTTTAGATGTACAAT
CTCGTCTTTCATTTGAATTCACTACTAGTCGGTTGATAGAGCATCAGAGC
TCCCTGACCCCATCTGCTTCCAAGACGGGTCAGCTGAACACCGGCGCCAA
AGCTGAGCAAGGAACACAGAAAACCGCGGCACCAATATCTGCCACAGGTC
AAGACAATGGAAATGCAGACAAACAGAAGGGGGTTTCGAGTCAGGCTGAA
CCAAACAAGACCGGCCTTCTCTCATCTGAGCGCAAAGGAGTAAGCAGAGC
TCTTAAGTGCGGCAATCTTGGACGTACCGTCGTGGATGTGGCTGCTGTGG
CTTTCACAGCTATTGCAAATGTTGGGGAGAACTGA

protein sequence of Ggra8747.t1

>Ggra8747.t1 ID=Ggra8747.t1|Name=Ggra8747.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MDHLSARQRAQLFSLKGKLLAQLGREDESVEAISTALFTSADVGSAWLSW
GEHCDDMQKKAAEDPSAFASFADNIDSDDKQIEELMGVSNGYAAELAFSE
SAVKCYLKAVRFGSRRARAFLSRVLRLLSLDVQSRLSFEFTTSRLIEHQS
SLTPSASKTGQLNTGAKAEQGTQKTAAPISATGQDNGNADKQKGVSSQAE
PNKTGLLSSERKGVSRALKCGNLGRTVVDVAAVAFTAIANVGEN*

mRNA from alignment at tig00000127_pilon:82540..83274+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8747.t1 ID=Ggra8747.t1|Name=Ggra8747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000127_pilon:82540..83274+ (Gracilaria gracilis GNS1m male)
ATGGACCATTTAAGCGCAAGACAGAGGGCTCAGTTGTTTTCGCTGAAGGG
AAAGCTGTTAGCCCAACTGGGAAGGGAAGATGAGTCAGTCGAAGCTATAT
CCACGGCCCTTTTCACCTCTGCAGATGTTGGATCCGCATGGCTTTCTTGG
GGTGAACATTGTGACGATATGCAAAAGAAGGCAGCAGAAGATCCATCGGC
ATTCGCATCTTTCGCAGATAATATAGATTCTGACGATAAGCAAATAGAAG
AGCTGATGGGGGTCAGCAATGGCTATGCCGCCGAGCTGGCCTTCAGCGAA
TCTGCTGTGAAATGTTACCTGAAGGCTGTGCGCTTCGGCTCACGGAGAGC
TCGAGCATTCTTGTCACGGGTTCTTCGACTCTTAAGTTTAGATGTACAAT
CTCGTCTTTCATTTGAATTCACTACTAGTCGGTTGATAGAGCATCAGAGC
TCCCTGACCCCATCTGCTTCCAAGACGGGTCAGCTGAACACCGGCGCCAA
AGCTGAGCAAGGAACACAGAAAACCGCGGCACCAATATCTGCCACAGGTC
AAGACAATGGAAATGCAGACAAACAGAAGGGGGTTTCGAGTCAGGCTGAA
CCAAACAAGACCGGCCTTCTCTCATCTGAGCGCAAAGGAGTAAGCAGAGC
TCTTAAGTGCGGCAATCTTGGACGTACCGTCGTGGATGTGGCTGCTGTGG
CTTTCACAGCTATTGCAAATGTTGGGGAGAACTGA

Coding sequence (CDS) from alignment at tig00000127_pilon:82540..83274+

>Ggra8747.t1 ID=Ggra8747.t1|Name=Ggra8747.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000127_pilon:82540..83274+ (Gracilaria gracilis GNS1m male)
ATGGACCATTTAAGCGCAAGACAGAGGGCTCAGTTGTTTTCGCTGAAGGG
AAAGCTGTTAGCCCAACTGGGAAGGGAAGATGAGTCAGTCGAAGCTATAT
CCACGGCCCTTTTCACCTCTGCAGATGTTGGATCCGCATGGCTTTCTTGG
GGTGAACATTGTGACGATATGCAAAAGAAGGCAGCAGAAGATCCATCGGC
ATTCGCATCTTTCGCAGATAATATAGATTCTGACGATAAGCAAATAGAAG
AGCTGATGGGGGTCAGCAATGGCTATGCCGCCGAGCTGGCCTTCAGCGAA
TCTGCTGTGAAATGTTACCTGAAGGCTGTGCGCTTCGGCTCACGGAGAGC
TCGAGCATTCTTGTCACGGGTTCTTCGACTCTTAAGTTTAGATGTACAAT
CTCGTCTTTCATTTGAATTCACTACTAGTCGGTTGATAGAGCATCAGAGC
TCCCTGACCCCATCTGCTTCCAAGACGGGTCAGCTGAACACCGGCGCCAA
AGCTGAGCAAGGAACACAGAAAACCGCGGCACCAATATCTGCCACAGGTC
AAGACAATGGAAATGCAGACAAACAGAAGGGGGTTTCGAGTCAGGCTGAA
CCAAACAAGACCGGCCTTCTCTCATCTGAGCGCAAAGGAGTAAGCAGAGC
TCTTAAGTGCGGCAATCTTGGACGTACCGTCGTGGATGTGGCTGCTGTGG
CTTTCACAGCTATTGCAAATGTTGGGGAGAACTGA