Ggra874.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra874.t1
Unique NameGgra874.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length109
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:37115..37650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3702.AT1G02680.1
PFAMsTFIID-18kDa
Max annot lvl35493|Streptophyta
KEGG koko:K03127
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000003,GO:0000428,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006355,GO:0006357,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009960,GO:0010154,GO:0010468,GO:0010556,GO:0016591,GO:0019219,GO:0019222,GO:0022414,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061458,GO:0061695,GO:0065007,GO:0070013,GO:0080090,GO:0090575,GO:0097159,GO:0140110,GO:1901363,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue2.27e-16
EggNOG OGsCOG5248@1|root,KOG3901@2759|Eukaryota,37UMD@33090|Viridiplantae,3GIJP@35493|Streptophyta,3HUIN@3699|Brassicales
DescriptionTranscription initiation factor IID, 18kD subunit
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra874Ggra874Gracilaria gracilis GNS1m malegenetig00000212_pilon 37115..37650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra874.t1Ggra874.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 37115..37650 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra874.t1.start1Ggra874.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 37115..37117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra874.t1.CDS1Ggra874.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 37115..37160 +
Ggra874.t1.CDS2Ggra874.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000212_pilon 37269..37375 +
Ggra874.t1.CDS3Ggra874.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000212_pilon 37477..37650 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra874.t1.exon1Ggra874.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 37115..37160 +
Ggra874.t1.exon2Ggra874.t1.exon2Gracilaria gracilis GNS1m maleexontig00000212_pilon 37269..37375 +
Ggra874.t1.exon3Ggra874.t1.exon3Gracilaria gracilis GNS1m maleexontig00000212_pilon 37477..37650 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra874.t1.intron1Ggra874.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000212_pilon 37161..37268 +
Ggra874.t1.intron2Ggra874.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000212_pilon 37376..37476 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra874.t1.stop1Ggra874.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 37648..37650 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra874.t1 ID=Ggra874.t1|Name=Ggra874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=109bp
MTPPQQHLPRIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNA
KSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKATALN
TEEVSKGS*
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spliced messenger RNA

>Ggra874.t1 ID=Ggra874.t1|Name=Ggra874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp|location=Sequence derived from alignment at tig00000212_pilon:37115..37650+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCTCCGCAGCAGCATCTGCCGCGCATCTTTGGCGGCGAGTTGCG
ACAGATGATGAGCGGCTTTGGCGACAGTCAGAGCCCGCGCGCCGAGTCGG
TCAAGCTCATGGAAGAGATCGTACTGGAGTACATTGCGGCGCTCAACGCG
AAGAGTACGGAGGTGGCGCTGTGTAATAAGAGGGAGCGCGCGGACCTGAT
GGACGTGATGTACGTGATTCGGCGCGACACGCGGCGGCTCAACCGCGTGC
GCTACCTGCTGGAGATGAAGGCGGAGATCCGCAAGGCGACGGCGCTCAAC
ACGGAGGAGGTGTCGAAGGGCAGCTGA
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protein sequence of Ggra874.t1

>Ggra874.t1 ID=Ggra874.t1|Name=Ggra874.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=109bp
MTPPQQHLPRIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNA
KSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKATALN
TEEVSKGS*
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mRNA from alignment at tig00000212_pilon:37115..37650+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra874.t1 ID=Ggra874.t1|Name=Ggra874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=536bp|location=Sequence derived from alignment at tig00000212_pilon:37115..37650+ (Gracilaria gracilis GNS1m male)
ATGACGCCTCCGCAGCAGCATCTGCCGCGCATCTTTGGCGGCGAGTGTAA
GTACGCGCCTTTGTGTTCCTACgcggcggcggcggcggcgcgcgcgcggc
tgcgacgCGACTCGGTATGATAGCTGTACTGACGGCTGGCGCTTTTACGT
GCAGTGCGACAGATGATGAGCGGCTTTGGCGACAGTCAGAGCCCGCGCGC
CGAGTCGGTCAAGCTCATGGAAGAGATCGTACTGGAGTACATTGCGGCGC
TCAACGCGAAGGTACGTTTTAGCCGATGCGACGCACAACGAAGGCGGGGG
GGTATGGCGAGAGTTGGAGCACTGACGGCTGTTTTCGAGGATGCGATTGC
GCGCGTGTTCAGAGTACGGAGGTGGCGCTGTGTAATAAGAGGGAGCGCGC
GGACCTGATGGACGTGATGTACGTGATTCGGCGCGACACGCGGCGGCTCA
ACCGCGTGCGCTACCTGCTGGAGATGAAGGCGGAGATCCGCAAGGCGACG
GCGCTCAACACGGAGGAGGTGTCGAAGGGCAGCTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:37115..37650+

>Ggra874.t1 ID=Ggra874.t1|Name=Ggra874.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=327bp|location=Sequence derived from alignment at tig00000212_pilon:37115..37650+ (Gracilaria gracilis GNS1m male)
ATGACGCCTCCGCAGCAGCATCTGCCGCGCATCTTTGGCGGCGAGTTGCG
ACAGATGATGAGCGGCTTTGGCGACAGTCAGAGCCCGCGCGCCGAGTCGG
TCAAGCTCATGGAAGAGATCGTACTGGAGTACATTGCGGCGCTCAACGCG
AAGAGTACGGAGGTGGCGCTGTGTAATAAGAGGGAGCGCGCGGACCTGAT
GGACGTGATGTACGTGATTCGGCGCGACACGCGGCGGCTCAACCGCGTGC
GCTACCTGCTGGAGATGAAGGCGGAGATCCGCAAGGCGACGGCGCTCAAC
ACGGAGGAGGTGTCGAAGGGCAGCTGA
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