Ggra874.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra874.t1
Unique NameGgra874.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length109
Homology
BLAST of Ggra874.t1 vs. uniprot
Match: A0A2V3IX03 (Transcription initiation factor TFIID subunit 13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX03_9FLOR)

HSP 1 Score: 164 bits (414), Expect = 2.460e-50
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 0
Query:    8 LPRIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKATALNTEEVSK 106
            LPR+F  ELRQMMSGFGDSQ+PRAESV+LMEEIVLEY+ ALNAKS EVALCNKRER DLMD+MYVIRRD RRLNRVRYLLEMKAEI+KAT LN EE+SK
Sbjct:   20 LPRVFYNELRQMMSGFGDSQNPRAESVRLMEEIVLEYMTALNAKSAEVALCNKRERPDLMDLMYVIRRDARRLNRVRYLLEMKAEIKKATNLNAEEISK 118          
BLAST of Ggra874.t1 vs. uniprot
Match: A0A5J4Z1N7 (Transcription initiation factor TFIID subunit 13 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1N7_PORPP)

HSP 1 Score: 98.2 bits (243), Expect = 4.050e-24
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 0
Query:    2 TPPQQHLPRIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKATAL 99
            T  ++ LPRIF  ELR MM GFGD+  P   +V +MEEI+L+++  L +K+TEVA   KR+R D+ DV +VIRRD RR  RVRYLL+MKA I  AT++
Sbjct:   20 TTGRKTLPRIFAQELRGMMYGFGDAVRPSKAAVDMMEEILLDHLFNLVSKTTEVAHIRKRDRPDITDVKFVIRRDRRRTQRVRYLLQMKASIDGATSM 117          
BLAST of Ggra874.t1 vs. uniprot
Match: A0A1X6NKX1 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKX1_PORUM)

HSP 1 Score: 95.5 bits (236), Expect = 2.620e-22
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 0
Query:    8 LPRIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKAT 97
            +PRIF  ELR MM GFGDS +P   S++LMEE+V+EYI AL  K+ +VA   +R+R D+ DV + IR+D R++ RVRYLL+M+A I+  T
Sbjct:   26 IPRIFVSELRGMMFGFGDSLTPSPASLQLMEEMVIEYIVALVTKTMDVAASRRRDRPDVTDVKFAIRKDDRKMQRVRYLLDMQAHIQTVT 115          
BLAST of Ggra874.t1 vs. uniprot
Match: A0A815ZRY1 (Hypothetical protein n=5 Tax=Rotaria TaxID=231623 RepID=A0A815ZRY1_9BILA)

HSP 1 Score: 78.6 bits (192), Expect = 1.800e-16
Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   10 RIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKATALNTEEVSKG 107
            R+F  ELR MM GFGD   P AESV+L+E++V++YI  +  K+TE+   NK+ R  + D++Y++R D R+  RV+ LL M  E+++A     +E SKG
Sbjct:   33 RLFSKELRNMMYGFGDDPQPYAESVELLEDLVVQYITDMTLKATEIG-SNKQGRMVVNDILYLLRHDPRKYARVKELLSMNEELKRARKA-FDEPSKG 128          
BLAST of Ggra874.t1 vs. uniprot
Match: A0A814E3C8 (Hypothetical protein n=2 Tax=Adineta TaxID=104781 RepID=A0A814E3C8_9BILA)

HSP 1 Score: 78.6 bits (192), Expect = 1.840e-16
Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   10 RIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKATALNTEEVSKG 107
            R+F  ELR MM GFGD   P AESV+L+E++VL+YI  +  K++E+   NK+ R  + D++Y++R D R+  RV+ LL M  E+++A     +E SKG
Sbjct:   34 RLFSKELRNMMYGFGDDPQPYAESVELLEDLVLQYITDMTLKASEIG-SNKQGRIVVNDILYLLRHDARKYARVKELLSMNEELKRARKA-FDEPSKG 129          
BLAST of Ggra874.t1 vs. uniprot
Match: A0A817QC44 (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817QC44_9BILA)

HSP 1 Score: 77.8 bits (190), Expect = 3.600e-16
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   10 RIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKATALNTEEVSKG 107
            R+F  ELR MM GFGD   P AESV+L+E++VL+YI  +  K+ E+   NK+ R  + D++Y++R D R+  RV+ LL M  E+++A     +E SKG
Sbjct:   33 RLFSKELRNMMYGFGDDPQPYAESVELLEDLVLQYITDMTLKAAEIG-SNKQGRIVVNDILYLLRHDRRKYARVKELLSMNEELKRARKA-FDEPSKG 128          
BLAST of Ggra874.t1 vs. uniprot
Match: A0A1D2MQ07 (Transcription initiation factor TFIID subunit 13 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MQ07_ORCCI)

HSP 1 Score: 77.4 bits (189), Expect = 7.340e-16
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 0
Query:   10 RIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKA 96
            R+F  ELR MM GFGD Q+P  ESV  +E+IV+EYI  +  K+ E     K  R  + D+M+++RRDTR+ +RV+ LL M  E++KA
Sbjct:   49 RLFSKELRCMMYGFGDDQNPYTESVDFIEDIVIEYITEVTQKAMETG---KTGRVQVEDIMHLVRRDTRKYSRVKDLLTMNEELKKA 132          
BLAST of Ggra874.t1 vs. uniprot
Match: transcription initiation factor TFIID subunit 13-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884D0D4 (transcription initiation factor TFIID subunit 13-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884D0D4)

HSP 1 Score: 76.6 bits (187), Expect = 8.340e-16
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 0
Query:   10 RIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKA 96
            R F  ELR MM GFGD Q+P  ESV L+E++V+E+IA +  ++ EV    +  R  + D+MY++R+D R+  RVR LL M  E++KA
Sbjct:   27 RFFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEFIAQMTQRAMEVG---RNGRVQVEDIMYLVRKDPRKYARVRDLLSMNEELKKA 110          
BLAST of Ggra874.t1 vs. uniprot
Match: transcription initiation factor TFIID subunit 13-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA3F4 (transcription initiation factor TFIID subunit 13-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA3F4)

HSP 1 Score: 76.3 bits (186), Expect = 1.180e-15
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 0
Query:    4 PQQHLPRIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKA 96
            P++   +IF  ELR MM GFGD Q+P  ESV L+E++V+EYI+ +  ++ EV    +  R  + D++++IR+D ++ +RV+ LL M  E+RKA
Sbjct:   20 PEKRTKKIFSKELRCMMYGFGDDQNPYTESVDLIEDLVIEYISEMTKRALEVG---RPGRISVEDIIFLIRKDPKKYSRVKELLTMSEELRKA 109          
BLAST of Ggra874.t1 vs. uniprot
Match: A0A817FW84 (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817FW84_9BILA)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-15
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   10 RIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNAKSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKATALNTEEVSKG 107
            R+F  ELR MM GFGD   P AESV+L+E++VL+YI  +  K+ E+   NK+ R  + D++Y++R D R+  RV+ LL M  E+++A     +E SKG
Sbjct:   88 RLFSKELRNMMYGFGDDPQPYAESVELLEDLVLQYITDMTLKAAEIG-SNKQGRIVVNDILYLLRHDPRKYARVKELLSMNEELKRARKA-FDEPSKG 183          
The following BLAST results are available for this feature:
BLAST of Ggra874.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IX032.460e-5084.85Transcription initiation factor TFIID subunit 13 n... [more]
A0A5J4Z1N74.050e-2454.08Transcription initiation factor TFIID subunit 13 n... [more]
A0A1X6NKX12.620e-2253.33Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A815ZRY11.800e-1643.88Hypothetical protein n=5 Tax=Rotaria TaxID=231623 ... [more]
A0A814E3C81.840e-1643.88Hypothetical protein n=2 Tax=Adineta TaxID=104781 ... [more]
A0A817QC443.600e-1643.88Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A1D2MQ077.340e-1647.13Transcription initiation factor TFIID subunit 13 n... [more]
transcription initiation factor TFIID subunit 13-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884D0D48.340e-1645.98transcription initiation factor TFIID subunit 13-l... [more]
transcription initiation factor TFIID subunit 13-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA3F41.180e-1541.94transcription initiation factor TFIID subunit 13-l... [more]
A0A817FW841.260e-1543.88Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 11..54
e-value: 5.3E-15
score: 56.8
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 14..53
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 12..96
e-value: 4.2E-21
score: 74.8
IPR003195Transcription initiation factor IID, subunit 13PANTHERPTHR11380TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATEDcoord: 11..97
IPR003195Transcription initiation factor IID, subunit 13CDDcd07978TAF13coord: 9..96
e-value: 1.28722E-24
score: 87.2007

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:37115..37650 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra874.t1Ggra874.t1Gracilaria gracilis GNS1m malemRNAtig00000212_pilon 37115..37650 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra874.t1 ID=Ggra874.t1|Name=Ggra874.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=109bp
MTPPQQHLPRIFGGELRQMMSGFGDSQSPRAESVKLMEEIVLEYIAALNA
KSTEVALCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIRKATALN
TEEVSKGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003195TFIID_TAF13