Ggra8736.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8736.t2
Unique NameGgra8736.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:33043..36520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007514713.1
PFAMsDUF2499,DUF3593
Max annot lvl3041|Chlorophyta
Evalue1.78e-18
EggNOG OGsKOG2445@1|root,KOG2445@2759|Eukaryota,389QN@33090|Viridiplantae,34PDU@3041|Chlorophyta
DescriptionProtein of unknown function (DUF3593)
COG categoryUY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8736Ggra8736Gracilaria gracilis GNS1m malegenetig00000127_pilon 33043..36520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t2Ggra8736.t2Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 33043..36520 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t2.stop1Ggra8736.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 33043..33045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t2.CDS1Ggra8736.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 33043..33426 -
Ggra8736.t2.CDS2Ggra8736.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000127_pilon 33480..34026 -
Ggra8736.t2.CDS3Ggra8736.t2.CDS3Gracilaria gracilis GNS1m maleCDStig00000127_pilon 36180..36271 -
Ggra8736.t2.CDS4Ggra8736.t2.CDS4Gracilaria gracilis GNS1m maleCDStig00000127_pilon 36350..36520 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t2.exon1Ggra8736.t2.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 33043..33426 -
Ggra8736.t2.exon2Ggra8736.t2.exon2Gracilaria gracilis GNS1m maleexontig00000127_pilon 33480..34026 -
Ggra8736.t2.exon3Ggra8736.t2.exon3Gracilaria gracilis GNS1m maleexontig00000127_pilon 36180..36271 -
Ggra8736.t2.exon4Ggra8736.t2.exon4Gracilaria gracilis GNS1m maleexontig00000127_pilon 36350..36520 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t2.intron1Ggra8736.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000127_pilon 33427..33479 -
Ggra8736.t2.intron2Ggra8736.t2.intron2Gracilaria gracilis GNS1m maleintrontig00000127_pilon 34027..36179 -
Ggra8736.t2.intron3Ggra8736.t2.intron3Gracilaria gracilis GNS1m maleintrontig00000127_pilon 36272..36349 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t2.start1Ggra8736.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 36518..36520 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8736.t2 ID=Ggra8736.t2|Name=Ggra8736.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MVSAFDAAAELASGGEAVLDFSVEGSGFVIDKRSVRLDGDGVVERGPCER
VTRHVLCFAARTFFSYDALDDTVDGVVMSGGLVHGIDRSCSAGCSMLVAQ
TADADGASGDVDALVSELAIMQRVELWLELPDCSVRSLTLALYGELTPST
TANFAAPVAARAYDNKGVYRVLSQLNVQLGDTLRNGGVSGAAAPSDGRLR
AKNWRLSHSAPGVLFMVVAHGYVDSRFFFTTRRGDSCYLDGRYVGFGRVQ
RKLDALFEQERAVAGEQCSLRIASVSGSRFSPGSFIHRGTVYTRSSLWGT
SLGIVPAVPRSTPENVTKMLVDSWSVSPAAIDGLAGQSFAVSLIPYLAFL
YVLNRSEAKCPPLLNFGFRFLLVFVFATIPAGIYAKAHYHDILANID*
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spliced messenger RNA

>Ggra8736.t2 ID=Ggra8736.t2|Name=Ggra8736.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000127_pilon:33043..36520- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAGCGCTTTTGACGCCGCTGCGGAGTTGGCGAGCGGCGGAGAGGC
CGTTTTGGACTTTTCTGTGGAGGGGAGCGGCTTTGTAATTGATAAGCGGA
GCGTGCGGTTGGATGGCGATGGCGTCGTGGAACGAGGACCTTGTGAGCGC
GTTACGCGCCATGTTTTATGCTTTGCAGCTAGAACATTCTTTTCTTATGA
TGCTCTCGATGATACTGTTGATGGTGTTGTAATGTCGGGTGGCTTGGTGC
ATGGGATTGATCGGAGCTGCTCGGCCGGCTGCTCCATGCTAGTGGCGCAG
ACGGCGGACGCAGACGGCGCATCGGGCGACGTGGACGCTTTGGTGTCCGA
GCTGGCCATCATGCAGCGCGTGGAGCTCTGGCTCGAGCTGCCGGACTGCA
GCGTACGCTCGCTCACGCTCGCGCTGTACGGCGAACTAACGCCGTCCACG
ACGGCCAATTTCGCCGCACCAGTAGCGGCGCGCGCGTACGACAACAAGGG
CGTGTACCGCGTGCTGTCGCAGCTCAACGTGCAGCTGGGCGACACGCTGC
GCAACGGCGGCGTGTCCGGCGCGGCCGCCCCCTCGGACGGCCGTCTGCGC
GCGAAGAACTGGAGACTGTCGCACTCGGCGCCCGGCGTGCTGTTCATGGT
GGTTGCGCATGGCTACGTGGATAGCCGCTTCTTTTTTACTACGCGACGCG
GCGATAGCTGTTACTTGGATGGCCGATACGTCGGCTTTGGGCGCGTACAA
CGAAAGCTCGACGCGCTGTTCGAGCAGGAACGCGCCGTGGCTGGCGAGCA
GTGCTCGCTGCGAATAGCATCTGTTTCTGGTTCACGGTTCAGTCCTGGTT
CATTCATACATAGAGGGACCGTATACACTCGTTCATCGCTATGGGGCACA
TCGCTAGGAATTGTGCCGGCTGTGCCACGTTCTACACCAGAGAATGTGAC
GAAAATGTTGGTTGATTCGTGGTCGGTGTCTCCAGCCGCGATAGACGGAC
TGGCCGGACAGAGCTTCGCTGTTTCTTTGATTCCTTACCTTGCCTTCCTC
TACGTTTTGAACCGTTCTGAAGCGAAATGTCCACCTCTTTTGAACTTCGG
CTTTCGCTTTCTCTTGGTTTTTGTATTTGCAACTATTCCAGCCGGAATAT
ACGCTAAGGCCCATTACCATGATATTCTGGCAAACATAGACTGA
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protein sequence of Ggra8736.t2

>Ggra8736.t2 ID=Ggra8736.t2|Name=Ggra8736.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MVSAFDAAAELASGGEAVLDFSVEGSGFVIDKRSVRLDGDGVVERGPCER
VTRHVLCFAARTFFSYDALDDTVDGVVMSGGLVHGIDRSCSAGCSMLVAQ
TADADGASGDVDALVSELAIMQRVELWLELPDCSVRSLTLALYGELTPST
TANFAAPVAARAYDNKGVYRVLSQLNVQLGDTLRNGGVSGAAAPSDGRLR
AKNWRLSHSAPGVLFMVVAHGYVDSRFFFTTRRGDSCYLDGRYVGFGRVQ
RKLDALFEQERAVAGEQCSLRIASVSGSRFSPGSFIHRGTVYTRSSLWGT
SLGIVPAVPRSTPENVTKMLVDSWSVSPAAIDGLAGQSFAVSLIPYLAFL
YVLNRSEAKCPPLLNFGFRFLLVFVFATIPAGIYAKAHYHDILANID*
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mRNA from alignment at tig00000127_pilon:33043..36520-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8736.t2 ID=Ggra8736.t2|Name=Ggra8736.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3478bp|location=Sequence derived from alignment at tig00000127_pilon:33043..36520- (Gracilaria gracilis GNS1m male)
ATGGTAAGCGCTTTTGACGCCGCTGCGGAGTTGGCGAGCGGCGGAGAGGC
CGTTTTGGACTTTTCTGTGGAGGGGAGCGGCTTTGTAATTGATAAGCGGA
GCGTGCGGTTGGATGGCGATGGCGTCGTGGAACGAGGACCTTGTGAGCGC
GTTACGCGCCATGTTTTATGCGTTCGTGCGCCACATACGGATCCTTCATG
ATACACATGGGACATACGTGAGTCAGGGAGGACCACAAGTTGCCGATAGT
TTGCAGCTAGAACATTCTTTTCTTATGATGCTCTCGATGATACTGTTGAT
GGTGTTGTAATGTCGGGTGGCTTGGTGCATGGGATTGATCGGTAAGTTCA
AACGTTTAACCAGAACTTCAGAGGCAGTCCTGGCAAAGCATCTGACCGTC
TTCCCCTCCTCCACACAAATCATGTAAAGGAAATTTGCATTTCCGACACT
TGCCACTGATCCTGTTGTTTGCATCGCATGTTGAACTTGGTCTGTTTCTG
AATAGGCAGCGCTCCTTGGCACCGCACACGATGCTGCATGTATTTGTTTC
AATGTTGTGGTCCTCTTTTTGCGTATCGATATGGGGGGCGGAGGATGTCA
ACTGAACTTGCTTTTGCAAATCATCTGTGTCATGATCACAACTGGAAACC
TTTCTTCGCTTAACGATTTCGAACGCATGCTTATGGCAGATGTCTAACTC
CTCATCCAACCGTTTGCACCGTTTCTTTAGACTGGCGTTTTCCTTCTTAA
GCAATTTTATTCTTGCTTCCATTTGTCGATACTTCCGTTTAGTGTATTGT
AGTACATCGTCGATCACTTGCCAATTGTTCTCAGCCAAGTTCTCGCTGTT
CCTCATAGTTTCTCGCGTTCTTTAAGCAGGTTTTAATAATGAAGCCCCGT
TGATTTCTGGGCTTATCGGACCTAAAGAAAGTTGATTCTCAGTGCCATAT
TCGTCACTCTCGATTTCGAGTCGCATAGGTGGCGTTTTGATTCGTAGTAT
CCGCTGCTTGCTCTCTACTCCTCGTTGCGGAGAAGATGGTGACGACTTAG
CTCGTGGCATTGGCAGTACTGGTGGATCTTGCTGGTTGAATGTATTAATA
CGACCTGCAGCTCGGAGAATCTCCGGAGATTTTGGCTGAGATGGTGTTGG
ACCCTTTACGTCAATAAAGCGTGCCAAATTTGGACGAGTTAAATCATCTT
TGCCGTTTGCTTTGCGGAAAGACGTAATTCTCGTCTTGGTTGAATGAGGA
AGAGGAGTCAGAGATTTGATTCTAATGTTCTCATTTGTCTCATACACAGG
CAGGACTCTCTTTTCGTATTTCTGTGAGCAATCAAGGCACAAGTTGTTCA
TCCATAGCCGTCTGACAGTTTCTGGCTTTCGACAGACTGAGCACCTGGAT
GGAGGCGTAGAGAGCTGCGACATGCTGGTTGCTGTTGAATACAGGCGTGA
GAGGAAGCTGCCTTGTGGGGCACTCAGAGAACTGCGAATAATTTAAACGC
TTCTGTCTTCGATACGGTATCGACCCGAAAAGCATTTCTATGCTATACGC
GCGTGGGGGACCGTATGGCGGTAGGAAGTCACAAAAAGCGCCGCCAACGC
CGGGAAGACAAGAAGAATGCGTCATAATTCACATGCGTTAGCCTTTTCCC
GAGAACGCCCATGGAGTAAAACGGTACACAATAGTCAAACATCTACGCAC
TCGCAAGAGTGCTCTTTACGACATTCAAATTCTCTTCATATTGAATAAAC
TTCACCTTCCCAAGTGGTCGCGGCGCATGCCGCCCGCCACGACGAGGAAG
CACGACACGGCGCGTGTTGAAGACGCGCGCGCACACAGAAAAGGACGGGA
CAGTGGCGGCTCCAGCCGGTGGCGCAGCAGCGCGGGCGCCGTCTCCAAGG
AAGTGTGCAGGAGAAAGGCGGGCGGCGCCACGCGTTGCACGGGCGCTACC
AGCCGGGCGCCCGCCAGCATCGTGCGCTCGAACTCCGCGCCGTCCGCCGA
CGGCGGCCAGGTGCATGACGCGCCATCGCCGCCGCGTGAGCGCAGCAGCA
CCGCAGCCGCCAGCAGCGCGGCCGCTAACAGCACCAGAACTGGCAACAAC
CGCCGTGGCGGCAGCAAAGCAGCGTGCGCCGGCGTGGTGGGGGCGCGGCG
GGGCAGTACTGCGACGTCGCGTGCGACTTTCGAGCGGTAGACGGTGGCGG
CAGCATCATGACTGGGTTGCGACGCGACGCGCGGAACGTGCACGCGATGG
TGGCGGCAGAGACGCGACGCGACGCGCGGGAGGCGCACGCGGTGGCGGCG
GCCGCGACGCGACGCGTGCGGCGCGCCCGCGGTGGCGGCGGCGCGACGCG
TTGGGCACGCACGCGGTGGCGGCGGGGGCGATGGCGGCGGCGGTTGGCGG
CGCCAAGTGCTGATTTCGTGTGGCAGCTCGGCACAGTATCGAAAAACTGT
CGTTGCTGTCACGATTGCGCCTCCATTTTTTGGGGTCGTGGCAGGAGCTG
CTCGGCCGGCTGCTCCATGCTAGTGGCGCAGACGGCGGACGCAGACGGCG
CATCGGGCGACGTGGACGCTTTGGTGTCCGAGCTGGCCATCATGCAGCGC
GTGGAGCTCTGGCTCGAGCTGCCGGACTGCAGCGTACGCTCGCTCACGCT
CGCGCTGTACGGCGAACTAACGCCGTCCACGACGGCCAATTTCGCCGCAC
CAGTAGCGGCGCGCGCGTACGACAACAAGGGCGTGTACCGCGTGCTGTCG
CAGCTCAACGTGCAGCTGGGCGACACGCTGCGCAACGGCGGCGTGTCCGG
CGCGGCCGCCCCCTCGGACGGCCGTCTGCGCGCGAAGAACTGGAGACTGT
CGCACTCGGCGCCCGGCGTGCTGTTCATGGTGGTTGCGCATGGCTACGTG
GATAGCCGCTTCTTTTTTACTACGCGACGCGGCGATAGCTGTTACTTGGA
TGGCCGATACGTCGGCTTTGGGCGCGTACAACGAAAGCTCGACGCGCTGT
TCGAGCAGGAACGCGCCGTGGCTGGCGAGCAGTGCTCGCTGGTGCGCCGC
CCTGTGCATTTCTGAGCAAGACGACATATCGATGCCGTCTGCAGCGAATA
GCATCTGTTTCTGGTTCACGGTTCAGTCCTGGTTCATTCATACATAGAGG
GACCGTATACACTCGTTCATCGCTATGGGGCACATCGCTAGGAATTGTGC
CGGCTGTGCCACGTTCTACACCAGAGAATGTGACGAAAATGTTGGTTGAT
TCGTGGTCGGTGTCTCCAGCCGCGATAGACGGACTGGCCGGACAGAGCTT
CGCTGTTTCTTTGATTCCTTACCTTGCCTTCCTCTACGTTTTGAACCGTT
CTGAAGCGAAATGTCCACCTCTTTTGAACTTCGGCTTTCGCTTTCTCTTG
GTTTTTGTATTTGCAACTATTCCAGCCGGAATATACGCTAAGGCCCATTA
CCATGATATTCTGGCAAACATAGACTGA
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Coding sequence (CDS) from alignment at tig00000127_pilon:33043..36520-

>Ggra8736.t2 ID=Ggra8736.t2|Name=Ggra8736.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000127_pilon:33043..36520- (Gracilaria gracilis GNS1m male)
ATGGTAAGCGCTTTTGACGCCGCTGCGGAGTTGGCGAGCGGCGGAGAGGC
CGTTTTGGACTTTTCTGTGGAGGGGAGCGGCTTTGTAATTGATAAGCGGA
GCGTGCGGTTGGATGGCGATGGCGTCGTGGAACGAGGACCTTGTGAGCGC
GTTACGCGCCATGTTTTATGCTTTGCAGCTAGAACATTCTTTTCTTATGA
TGCTCTCGATGATACTGTTGATGGTGTTGTAATGTCGGGTGGCTTGGTGC
ATGGGATTGATCGGAGCTGCTCGGCCGGCTGCTCCATGCTAGTGGCGCAG
ACGGCGGACGCAGACGGCGCATCGGGCGACGTGGACGCTTTGGTGTCCGA
GCTGGCCATCATGCAGCGCGTGGAGCTCTGGCTCGAGCTGCCGGACTGCA
GCGTACGCTCGCTCACGCTCGCGCTGTACGGCGAACTAACGCCGTCCACG
ACGGCCAATTTCGCCGCACCAGTAGCGGCGCGCGCGTACGACAACAAGGG
CGTGTACCGCGTGCTGTCGCAGCTCAACGTGCAGCTGGGCGACACGCTGC
GCAACGGCGGCGTGTCCGGCGCGGCCGCCCCCTCGGACGGCCGTCTGCGC
GCGAAGAACTGGAGACTGTCGCACTCGGCGCCCGGCGTGCTGTTCATGGT
GGTTGCGCATGGCTACGTGGATAGCCGCTTCTTTTTTACTACGCGACGCG
GCGATAGCTGTTACTTGGATGGCCGATACGTCGGCTTTGGGCGCGTACAA
CGAAAGCTCGACGCGCTGTTCGAGCAGGAACGCGCCGTGGCTGGCGAGCA
GTGCTCGCTGCGAATAGCATCTGTTTCTGGTTCACGGTTCAGTCCTGGTT
CATTCATACATAGAGGGACCGTATACACTCGTTCATCGCTATGGGGCACA
TCGCTAGGAATTGTGCCGGCTGTGCCACGTTCTACACCAGAGAATGTGAC
GAAAATGTTGGTTGATTCGTGGTCGGTGTCTCCAGCCGCGATAGACGGAC
TGGCCGGACAGAGCTTCGCTGTTTCTTTGATTCCTTACCTTGCCTTCCTC
TACGTTTTGAACCGTTCTGAAGCGAAATGTCCACCTCTTTTGAACTTCGG
CTTTCGCTTTCTCTTGGTTTTTGTATTTGCAACTATTCCAGCCGGAATAT
ACGCTAAGGCCCATTACCATGATATTCTGGCAAACATAGACTGA
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