Ggra867.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra867.t1
Unique NameGgra867.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:11776..12589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo6g055960.1
PFAMsPAH,Sin3_corepress,Sin3a_C
Max annot lvl35493|Streptophyta
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
GOsGO:0000118,GO:0000122,GO:0000785,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0098732,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue0.00037
EggNOG OGsCOG5602@1|root,KOG4204@2759|Eukaryota,37NWC@33090|Viridiplantae,3G9Z6@35493|Streptophyta,3HVUB@3699|Brassicales
DescriptionPaired amphipathic helix protein Sin3-like
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra867Ggra867Gracilaria gracilis GNS1m malegenetig00000212_pilon 11776..12589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra867.t1Ggra867.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 11776..12589 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra867.t1.stop1Ggra867.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 11776..11778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra867.t1.CDS1Ggra867.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 11776..11940 -
Ggra867.t1.CDS2Ggra867.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000212_pilon 12024..12030 -
Ggra867.t1.CDS3Ggra867.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000212_pilon 12319..12443 -
Ggra867.t1.CDS4Ggra867.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000212_pilon 12551..12589 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra867.t1.exon1Ggra867.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 11776..11940 -
Ggra867.t1.exon2Ggra867.t1.exon2Gracilaria gracilis GNS1m maleexontig00000212_pilon 12024..12030 -
Ggra867.t1.exon3Ggra867.t1.exon3Gracilaria gracilis GNS1m maleexontig00000212_pilon 12319..12443 -
Ggra867.t1.exon4Ggra867.t1.exon4Gracilaria gracilis GNS1m maleexontig00000212_pilon 12551..12589 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra867.t1.intron1Ggra867.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000212_pilon 11941..12023 -
Ggra867.t1.intron2Ggra867.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000212_pilon 12031..12318 -
Ggra867.t1.intron3Ggra867.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000212_pilon 12444..12550 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra867.t1.start1Ggra867.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 12587..12589 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra867.t1 ID=Ggra867.t1|Name=Ggra867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=112bp
MNCLHSLLPPQPMITRSASAIGQTFESRNDRCWKHTETVRNWWGAGGTAT
SRGESLRNLVYLVAQLFRGHKELIIGFNAFLPQEYTICMTQGRNGVFIMG
FEGPDGFIVIP*
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spliced messenger RNA

>Ggra867.t1 ID=Ggra867.t1|Name=Ggra867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp|location=Sequence derived from alignment at tig00000212_pilon:11776..12589- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTGCCTTCATTCATTATTACCGCCGCAACCAATGATTACCCGATC
CGCCTCCGCGATCGGACAGACCTTCGAGTCCCGTAATGATCGTTGCTGGA
AGCATACGGAAACCGTCAGGAACTGGTGGGGGGCGGGCGGCACCGCCACG
TCGCGCGGTGAATCATTAAGAAATCTTGTATACCTCGTCGCCCAACTGTT
CCGTGGCCATAAGGAACTCATCATAGGATTTAACGCTTTTCTTCCCCAGG
AATACACCATTTGTATGACTCAAGGACGAAACGGAGTGTTCATAATGGGC
TTTGAAGGCCCAGACGGCTTCATCGTTATACCGTAA
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protein sequence of Ggra867.t1

>Ggra867.t1 ID=Ggra867.t1|Name=Ggra867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=112bp
MNCLHSLLPPQPMITRSASAIGQTFESRNDRCWKHTETVRNWWGAGGTAT
SRGESLRNLVYLVAQLFRGHKELIIGFNAFLPQEYTICMTQGRNGVFIMG
FEGPDGFIVIP*
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mRNA from alignment at tig00000212_pilon:11776..12589-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra867.t1 ID=Ggra867.t1|Name=Ggra867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=814bp|location=Sequence derived from alignment at tig00000212_pilon:11776..12589- (Gracilaria gracilis GNS1m male)
ATGAATTGCCTTCATTCATTATTACCGCCGCAACCAATGGTATGACTTAT
GTCCAGGCGAACTCAACCGGGTTTTCCACATCCCTCTATGATATCCTTTC
ATATTCTCAGCAACGCTAATCATGTACGTCGTCGCCTGTGGAGCAGATTA
CCCGATCCGCCTCCGCGATCGGACAGACCTTCGAGTCCCGTAATGATCGT
TGCTGGAAGCATACGGAAACCGTCAGGAACTGGTGGGGGGCGGGCGGCAC
CGCCACGTCGCGCGGTGAATCGTCTTTTTCCACTGTACCGGGTGGATTTC
TGCTCTCTGTAGCGCAAAGTACAAATGTACCAAACACAGTGCTTTTCTGT
TATGGTGAGCTCACCAGCTTCCACCCGTGATCAGACTGTAGAAGAAATCA
TCTCATCGAGGGGTGATAAAGATCGCCCATCTCAACCACAACCTCCTCAG
TTACATCGCGCCAACTTTGCCGTCAGCACCGCCAAAAAGAATCGAACAGA
TATTGAATATGCAGCGACGCCGAGCAAAGGTTGAGGACGCGTTAGCGTTT
TTGGCGAAGATTAAGAGTGAGTTCTCGGCAGACATCGTGGTCTACAACCA
GTTTCTATATCTAATGAAGGAGTTCGAAGCTAATTCTATCGATGCGAAGA
ATCTTGTATACCTCGTCGCCCAACTGTTCCGTGGCCATAAGGAACTCATC
ATAGGATTTAACGCTTTTCTTCCCCAGGAATACACCATTTGTATGACTCA
AGGACGAAACGGAGTGTTCATAATGGGCTTTGAAGGCCCAGACGGCTTCA
TCGTTATACCGTAA
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Coding sequence (CDS) from alignment at tig00000212_pilon:11776..12589-

>Ggra867.t1 ID=Ggra867.t1|Name=Ggra867.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=336bp|location=Sequence derived from alignment at tig00000212_pilon:11776..12589- (Gracilaria gracilis GNS1m male)
ATGAATTGCCTTCATTCATTATTACCGCCGCAACCAATGATTACCCGATC
CGCCTCCGCGATCGGACAGACCTTCGAGTCCCGTAATGATCGTTGCTGGA
AGCATACGGAAACCGTCAGGAACTGGTGGGGGGCGGGCGGCACCGCCACG
TCGCGCGGTGAATCATTAAGAAATCTTGTATACCTCGTCGCCCAACTGTT
CCGTGGCCATAAGGAACTCATCATAGGATTTAACGCTTTTCTTCCCCAGG
AATACACCATTTGTATGACTCAAGGACGAAACGGAGTGTTCATAATGGGC
TTTGAAGGCCCAGACGGCTTCATCGTTATACCGTAA
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