Ggra867.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra867.t1
Unique NameGgra867.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length112
Homology
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BLAST of Ggra867.t1 vs. uniprot
Match: R7Q5C5 (HDAC_interact domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C5_CHOCR)

HSP 1 Score: 57.8 bits (138), Expect = 2.140e-7
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:   63 VAQLFRGHKELIIGFNAFLPQEYTICMTQGR-NGVFIMGFEGPDGFIVIP 111
            V+ LFRGH +LI+GFN FLP  Y I +T+ +  GV   GF+GP+GF  +P
Sbjct:   83 VSNLFRGHMDLILGFNTFLPPGYKIKVTKDKATGVVNTGFDGPEGFSQLP 132
The following BLAST results are available for this feature:
BLAST of Ggra867.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7Q5C52.140e-752.00HDAC_interact domain-containing protein n=1 Tax=Ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036600Paired amphipathic helix superfamilyGENE3D1.20.1160.11Paired amphipathic helixcoord: 19..85
e-value: 2.2E-5
score: 26.4
IPR036600Paired amphipathic helix superfamilySUPERFAMILY47762PAH2 domaincoord: 55..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:11776..12589 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra867.t1Ggra867.t1Gracilaria gracilis GNS1m malemRNAtig00000212_pilon 11776..12589 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra867.t1 ID=Ggra867.t1|Name=Ggra867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=112bp
MNCLHSLLPPQPMITRSASAIGQTFESRNDRCWKHTETVRNWWGAGGTAT
SRGESLRNLVYLVAQLFRGHKELIIGFNAFLPQEYTICMTQGRNGVFIMG
FEGPDGFIVIP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036600PAH_sf