Ggra866.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra866.t1
Unique NameGgra866.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000178_piloncontigtig00000178_pilon:309291..310010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog595460.RRSWK_03699
PFAMsAlginate_lyase2
Max annot lvl2|Bacteria
Evalue3.96e-13
EggNOG OGs2DKE2@1|root,32UEY@2|Bacteria
DescriptionAlginate lyase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra866Ggra866Gracilaria gracilis GNS1m malegenetig00000178_pilon 309291..310010 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra866.t1.stop1Ggra866.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000178_pilon 309291..309293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra866.t1.CDS1Ggra866.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000178_pilon 309291..310010 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra866.t1.exon1Ggra866.t1.exon1Gracilaria gracilis GNS1m maleexontig00000178_pilon 309291..310010 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra866.t1.start1Ggra866.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000178_pilon 310008..310010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra866.t1Ggra866.t1Gracilaria gracilis GNS1m malepolypeptidetig00000178_pilon 309291..310010 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra866.t1 ID=Ggra866.t1|Name=Ggra866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MQPLFVLLCVVCSLCLREVLAYTAPSTKSKFRPVLARAKLQAPDSSTAAF
DLFGYSSASFHLQGGTYMQFQMKGSSKRSELREMKTNGDKAAWSVESSNT
LHAEIALPKPASGLDEITFLQVHSGASKPALRVSWRRSYKENGKTYSDCI
ISTLRDGLGSGDVHKKFLAQRHTGTKSYKIRVKNSKVSIWISGSRVLNEA
TMAFWKRYPTCYFKAGAYINKASSDTASARTKFKELDWS*
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spliced messenger RNA

>Ggra866.t1 ID=Ggra866.t1|Name=Ggra866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000178_pilon:309291..310010- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCACTTTTCGTGCTGCTCTGTGTCGTGTGTTCTCTGTGCTTGCG
TGAGGTTCTGGCCTATACGGCGCCGTCCACCAAATCCAAGTTCCGCCCGG
TGCTGGCAAGAGCAAAGCTGCAAGCCCCGGATTCAAGCACTGCCGCCTTC
GACCTTTTTGGCTATTCATCCGCATCTTTTCACCTGCAGGGCGGCACCTA
CATGCAGTTCCAGATGAAAGGTTCCTCCAAGCGCTCCGAGCTCCGTGAAA
TGAAGACCAACGGTGACAAGGCAGCTTGGTCTGTCGAGTCGTCCAATACG
CTTCACGCCGAAATCGCGTTGCCAAAGCCTGCGTCTGGCCTGGACGAGAT
TACCTTTCTGCAAGTGCATTCTGGTGCTTCTAAGCCTGCATTGCGAGTCA
GTTGGCGGAGGAGCTACAAAGAGAACGGGAAGACCTACTCGGATTGCATT
ATCTCCACCCTGAGGGATGGACTTGGAAGTGGCGATGTCCACAAGAAGTT
TCTCGCTCAGCGCCACACGGGTACCAAGAGCTACAAGATTCGGGTAAAAA
ATAGCAAAGTGAGCATTTGGATTAGTGGTTCCCGTGTGCTCAATGAGGCA
ACTATGGCATTCTGGAAGCGGTATCCAACTTGTTACTTCAAGGCTGGTGC
TTATATTAACAAGGCCAGTAGCGATACTGCTTCTGCCCGCACCAAGTTCA
AAGAGCTTGATTGGTCTTAA
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protein sequence of Ggra866.t1

>Ggra866.t1 ID=Ggra866.t1|Name=Ggra866.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MQPLFVLLCVVCSLCLREVLAYTAPSTKSKFRPVLARAKLQAPDSSTAAF
DLFGYSSASFHLQGGTYMQFQMKGSSKRSELREMKTNGDKAAWSVESSNT
LHAEIALPKPASGLDEITFLQVHSGASKPALRVSWRRSYKENGKTYSDCI
ISTLRDGLGSGDVHKKFLAQRHTGTKSYKIRVKNSKVSIWISGSRVLNEA
TMAFWKRYPTCYFKAGAYINKASSDTASARTKFKELDWS*
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mRNA from alignment at tig00000178_pilon:309291..310010-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra866.t1 ID=Ggra866.t1|Name=Ggra866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000178_pilon:309291..310010- (Gracilaria gracilis GNS1m male)
ATGCAGCCACTTTTCGTGCTGCTCTGTGTCGTGTGTTCTCTGTGCTTGCG
TGAGGTTCTGGCCTATACGGCGCCGTCCACCAAATCCAAGTTCCGCCCGG
TGCTGGCAAGAGCAAAGCTGCAAGCCCCGGATTCAAGCACTGCCGCCTTC
GACCTTTTTGGCTATTCATCCGCATCTTTTCACCTGCAGGGCGGCACCTA
CATGCAGTTCCAGATGAAAGGTTCCTCCAAGCGCTCCGAGCTCCGTGAAA
TGAAGACCAACGGTGACAAGGCAGCTTGGTCTGTCGAGTCGTCCAATACG
CTTCACGCCGAAATCGCGTTGCCAAAGCCTGCGTCTGGCCTGGACGAGAT
TACCTTTCTGCAAGTGCATTCTGGTGCTTCTAAGCCTGCATTGCGAGTCA
GTTGGCGGAGGAGCTACAAAGAGAACGGGAAGACCTACTCGGATTGCATT
ATCTCCACCCTGAGGGATGGACTTGGAAGTGGCGATGTCCACAAGAAGTT
TCTCGCTCAGCGCCACACGGGTACCAAGAGCTACAAGATTCGGGTAAAAA
ATAGCAAAGTGAGCATTTGGATTAGTGGTTCCCGTGTGCTCAATGAGGCA
ACTATGGCATTCTGGAAGCGGTATCCAACTTGTTACTTCAAGGCTGGTGC
TTATATTAACAAGGCCAGTAGCGATACTGCTTCTGCCCGCACCAAGTTCA
AAGAGCTTGATTGGTCTTAA
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Coding sequence (CDS) from alignment at tig00000178_pilon:309291..310010-

>Ggra866.t1 ID=Ggra866.t1|Name=Ggra866.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000178_pilon:309291..310010- (Gracilaria gracilis GNS1m male)
ATGCAGCCACTTTTCGTGCTGCTCTGTGTCGTGTGTTCTCTGTGCTTGCG
TGAGGTTCTGGCCTATACGGCGCCGTCCACCAAATCCAAGTTCCGCCCGG
TGCTGGCAAGAGCAAAGCTGCAAGCCCCGGATTCAAGCACTGCCGCCTTC
GACCTTTTTGGCTATTCATCCGCATCTTTTCACCTGCAGGGCGGCACCTA
CATGCAGTTCCAGATGAAAGGTTCCTCCAAGCGCTCCGAGCTCCGTGAAA
TGAAGACCAACGGTGACAAGGCAGCTTGGTCTGTCGAGTCGTCCAATACG
CTTCACGCCGAAATCGCGTTGCCAAAGCCTGCGTCTGGCCTGGACGAGAT
TACCTTTCTGCAAGTGCATTCTGGTGCTTCTAAGCCTGCATTGCGAGTCA
GTTGGCGGAGGAGCTACAAAGAGAACGGGAAGACCTACTCGGATTGCATT
ATCTCCACCCTGAGGGATGGACTTGGAAGTGGCGATGTCCACAAGAAGTT
TCTCGCTCAGCGCCACACGGGTACCAAGAGCTACAAGATTCGGGTAAAAA
ATAGCAAAGTGAGCATTTGGATTAGTGGTTCCCGTGTGCTCAATGAGGCA
ACTATGGCATTCTGGAAGCGGTATCCAACTTGTTACTTCAAGGCTGGTGC
TTATATTAACAAGGCCAGTAGCGATACTGCTTCTGCCCGCACCAAGTTCA
AAGAGCTTGATTGGTCTTAA
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