Ggra866.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra866.t1
Unique NameGgra866.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Homology
BLAST of Ggra866.t1 vs. uniprot
Match: A0A485PVH1 (Alginate lyase (PL7) n=3 Tax=Paradendryphiella salina TaxID=179392 RepID=A0A485PVH1_9PLEO)

HSP 1 Score: 187 bits (476), Expect = 6.320e-56
Identity = 108/232 (46.55%), Postives = 147/232 (63.36%), Query Frame = 0
Query:   13 SLCLREVLAYTAPSTKSKFRPVLARAKLQAPDSSTAAF--DLF-GYSSASFHLQGGTYMQFQMKGSSKRSELREMKTNGDKAAWSVESSNTLH---AEIALPKPASGLDEITFLQVHSGASKPALRVSWRRSYKENGKTYSDCIISTLRDGLGSGDVHKKFLAQRHTGTKSYKIRVKNSKVSIWISGSRVLNEATMAFWKRYPTCYFKAGAYINKASSDTASARTKFKELDW 238
            SL    V AYTAPST+SKF  VL++AKLQ P S+T AF  DL  GY+++ F+L    YMQFQ+ GSS+RSELREM+T+GD+AAW    S T H   A+IA+P    G++E+T LQVH     P LR+SW  S   +G T  D +++T+R+G+      K  L    T    + I V+NSK+SI + G+  L+EA ++ +    TCYFKAGAY N  +  +A+AR K  EL+W
Sbjct:   14 SLVAPAVAAYTAPSTESKFTEVLSKAKLQYPTSTTVAFADDLLDGYAASYFYLTSDLYMQFQVAGSSQRSELREMETSGDEAAWDCTGS-TAHVASAQIAIPVQEDGIEEVTILQVHDSDVTPVLRISWVSSITIDGVTSEDVVLATIRNGIDDSTATKTVLQAHTTSRTEFNINVQNSKLSITVDGTTELDEADISQFDG-STCYFKAGAYNNNPTDTSANARIKMYELEW 243          
BLAST of Ggra866.t1 vs. uniprot
Match: A0A7I9C8Z1 (Alginate lyase n=1 Tax=Paradendryphiella salina TaxID=179392 RepID=A0A7I9C8Z1_9PLEO)

HSP 1 Score: 174 bits (441), Expect = 1.090e-50
Identity = 102/234 (43.59%), Postives = 145/234 (61.97%), Query Frame = 0
Query:   13 SLCLREVLAYTAPSTKSKFRPVLARAKLQAPDSSTAAFD---LFGYSSASFHLQGGTYMQFQMKGSSKRSELREM-KTNGDKAAWSVE--SSNTLHAEIALPKPASGLDEITFLQVHSGASKPALRVSWRRSYKENGKTYSDCIISTLRDGLG--SGDVHKKFLAQRHTGTKSYKIRVKNSKVSIWISGSRVLNEATMAFWKRYPTCYFKAGAYINKASSDTASARTKFKELDW 238
            SL     +A TA S+   F PVL  AKLQ P S+ AA     L GY  + F+LQ G YMQFQ+ GSS R ELR+M    G +  W+V+  +++T  + I +P+   G++E+T +Q+HSG + P LR+SW RS   +G  Y D I+ST+R G G  S +  K  LA R  G  S++I VK+SK++I ++G+ V+N   ++FW    +CYFKAGAY N  +S++A+AR KF  L W
Sbjct:    8 SLLATNAMALTAVSSIDTFLPVLNEAKLQWPTSALAASSEELLGGYVGSQFYLQDGKYMQFQIAGSSNRCELRQMIPDGGSEIGWAVDDGTTHTATSSIVVPEQVDGVEEVTIMQIHSGEA-PQLRISWIRSKSLDGVAYEDFIMSTVRIGTGDSSDNFVKTHLADRTAGAMSFQIDVKDSKLTITVNGNVVVNGQDLSFWDGTDSCYFKAGAYNNNPTSESATARIKFAALAW 240          
BLAST of Ggra866.t1 vs. uniprot
Match: A0A7I9C7R9 (Alginate lyase n=1 Tax=Paradendryphiella salina TaxID=179392 RepID=A0A7I9C7R9_9PLEO)

HSP 1 Score: 160 bits (406), Expect = 2.290e-45
Identity = 92/224 (41.07%), Postives = 131/224 (58.48%), Query Frame = 0
Query:   22 YTAPSTKSKFRPVLARAKLQAPDS--STAAFDLF-GYSSASFHLQGGTYMQFQMKGSSKRSELREMKTNGDKAAWSVESSNT--LHAEIALPKPASGLDEITFLQVHSGASKPALRVSWRRSYKENGKTYSDCIISTLRDGLGSGDVH--KKFLAQRHTGTKSYKIRVKNSKVSIWISGSRVLNEATMAFWKRYPTCYFKAGAYINKASSDTASARTKFKELDW 238
            Y APST S  + VL RAKLQ P S  S  + +L+ G+++A F L  G YMQ Q+ G+S+RSELR+M+  G +  W+V+   T      I +P    G++E+T +Q+H G + P LR+SW  S K +G  Y D IIST+R GLGS      K  L +R+    +Y+I   +SK+SI + G   ++   ++FW    + YFKAGAY N  S  +A+AR  F  L W
Sbjct:   23 YVAPSTNSTLQSVLTRAKLQYPTSELSATSTELYNGFAAAHFQLIEGRYMQLQVAGASRRSELRQMEKFGSEEYWAVDDGETHISKGSIMVPAQEDGIEEVTIMQIHGGPA-PILRISWVSSIKIDGTEYEDVIISTIRVGLGSSSDQFIKNVLTERYDAFLTYRIEAVDSKLSIKVDGQTKVDNVDVSFWDGDASNYFKAGAYNNHPSDSSATARVLFNSLSW 245          
The following BLAST results are available for this feature:
BLAST of Ggra866.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A485PVH16.320e-5646.55Alginate lyase (PL7) n=3 Tax=Paradendryphiella sal... [more]
A0A7I9C8Z11.090e-5043.59Alginate lyase n=1 Tax=Paradendryphiella salina Ta... [more]
A0A7I9C7R92.290e-4541.07Alginate lyase n=1 Tax=Paradendryphiella salina Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014895Alginate lyase 2PFAMPF08787Alginate_lyase2coord: 68..237
e-value: 4.0E-21
score: 75.9
NoneNo IPR availableGENE3D2.60.120.200coord: 25..239
e-value: 7.5E-26
score: 93.2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..239
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 54..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000178_piloncontigtig00000178_pilon:309291..310010 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra866.t1Ggra866.t1Gracilaria gracilis GNS1m malemRNAtig00000178_pilon 309291..310010 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra866.t1 ID=Ggra866.t1|Name=Ggra866.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MQPLFVLLCVVCSLCLREVLAYTAPSTKSKFRPVLARAKLQAPDSSTAAF
DLFGYSSASFHLQGGTYMQFQMKGSSKRSELREMKTNGDKAAWSVESSNT
LHAEIALPKPASGLDEITFLQVHSGASKPALRVSWRRSYKENGKTYSDCI
ISTLRDGLGSGDVHKKFLAQRHTGTKSYKIRVKNSKVSIWISGSRVLNEA
TMAFWKRYPTCYFKAGAYINKASSDTASARTKFKELDWS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014895Alginate_lyase_2
IPR013320ConA-like_dom_sf