Ggra8653.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8653.t1
Unique NameGgra8653.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:301641..302303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5888.CAK56185
PFAMsCyclin
Max annot lvl2759|Eukaryota
Evalue1.01e-25
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota,3ZCB3@5878|Ciliophora
DescriptionCyclin
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8653Ggra8653Gracilaria gracilis GNS1m malegenetig00000855_pilon 301641..302303 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8653.t1.start1Ggra8653.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 301641..301643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8653.t1.CDS1Ggra8653.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 301641..302303 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8653.t1.exon1Ggra8653.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 301641..302303 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8653.t1.stop1Ggra8653.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 302301..302303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8653.t1Ggra8653.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 301641..302303 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8653.t1 ID=Ggra8653.t1|Name=Ggra8653.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=221bp
MAFLSSVDSSSEGVSIQTPDATAETAVLNEKKRLTASELFERTLECYLTL
EIQRSESLPLGQSQNANQAAEVDQSVFSSSELPNITPVDYLRRLLELGYC
SNSAHILAFFYIRKISNLRFEWLVVNAHSIHRLLLAATMLAAKFVDDYHY
DNPHFAKLGGVDVDEINDLEEEMLKLLHYDLFVSAEQYAAFERYMVREVL
SFDDRQFLALREKLRTCVYF*
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spliced messenger RNA

>Ggra8653.t1 ID=Ggra8653.t1|Name=Ggra8653.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000855_pilon:301641..302303+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTTTTGAGCAGTGTAGATTCATCGAGCGAAGGCGTTAGCATTCA
GACGCCAGACGCCACGGCGGAGACTGCTGTGCTCAACGAAAAGAAGCGCC
TCACAGCCAGTGAGTTGTTCGAGCGCACTTTAGAATGCTATCTGACGTTG
GAGATTCAACGCAGCGAGAGCTTACCTCTTGGTCAGAGCCAGAACGCAAA
CCAGGCAGCCGAGGTGGACCAGTCTGTGTTCTCCTCGTCAGAATTGCCGA
ACATCACACCTGTGGACTATCTTCGTCGCCTCCTTGAGTTGGGCTATTGT
TCTAATTCTGCGCATATATTAGCGTTCTTCTACATTCGAAAGATCTCAAA
TCTACGGTTCGAATGGCTAGTAGTTAATGCTCACAGTATTCACCGTTTGC
TGCTCGCTGCCACCATGTTGGCGGCGAAGTTTGTAGATGATTATCATTAC
GACAACCCCCACTTTGCAAAGTTGGGAGGCGTGGATGTAGACGAGATCAA
CGATTTGGAAGAAGAGATGCTAAAGTTGTTGCACTACGATCTCTTTGTGA
GTGCTGAACAATATGCAGCCTTTGAACGATATATGGTGAGGGAGGTTCTC
TCCTTCGACGATCGGCAGTTCCTCGCACTTCGAGAGAAGCTCAGAACTTG
CGTATACTTCTGA
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protein sequence of Ggra8653.t1

>Ggra8653.t1 ID=Ggra8653.t1|Name=Ggra8653.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MAFLSSVDSSSEGVSIQTPDATAETAVLNEKKRLTASELFERTLECYLTL
EIQRSESLPLGQSQNANQAAEVDQSVFSSSELPNITPVDYLRRLLELGYC
SNSAHILAFFYIRKISNLRFEWLVVNAHSIHRLLLAATMLAAKFVDDYHY
DNPHFAKLGGVDVDEINDLEEEMLKLLHYDLFVSAEQYAAFERYMVREVL
SFDDRQFLALREKLRTCVYF*
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mRNA from alignment at tig00000855_pilon:301641..302303+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8653.t1 ID=Ggra8653.t1|Name=Ggra8653.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000855_pilon:301641..302303+ (Gracilaria gracilis GNS1m male)
ATGGCATTTTTGAGCAGTGTAGATTCATCGAGCGAAGGCGTTAGCATTCA
GACGCCAGACGCCACGGCGGAGACTGCTGTGCTCAACGAAAAGAAGCGCC
TCACAGCCAGTGAGTTGTTCGAGCGCACTTTAGAATGCTATCTGACGTTG
GAGATTCAACGCAGCGAGAGCTTACCTCTTGGTCAGAGCCAGAACGCAAA
CCAGGCAGCCGAGGTGGACCAGTCTGTGTTCTCCTCGTCAGAATTGCCGA
ACATCACACCTGTGGACTATCTTCGTCGCCTCCTTGAGTTGGGCTATTGT
TCTAATTCTGCGCATATATTAGCGTTCTTCTACATTCGAAAGATCTCAAA
TCTACGGTTCGAATGGCTAGTAGTTAATGCTCACAGTATTCACCGTTTGC
TGCTCGCTGCCACCATGTTGGCGGCGAAGTTTGTAGATGATTATCATTAC
GACAACCCCCACTTTGCAAAGTTGGGAGGCGTGGATGTAGACGAGATCAA
CGATTTGGAAGAAGAGATGCTAAAGTTGTTGCACTACGATCTCTTTGTGA
GTGCTGAACAATATGCAGCCTTTGAACGATATATGGTGAGGGAGGTTCTC
TCCTTCGACGATCGGCAGTTCCTCGCACTTCGAGAGAAGCTCAGAACTTG
CGTATACTTCTGA
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Coding sequence (CDS) from alignment at tig00000855_pilon:301641..302303+

>Ggra8653.t1 ID=Ggra8653.t1|Name=Ggra8653.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00000855_pilon:301641..302303+ (Gracilaria gracilis GNS1m male)
ATGGCATTTTTGAGCAGTGTAGATTCATCGAGCGAAGGCGTTAGCATTCA
GACGCCAGACGCCACGGCGGAGACTGCTGTGCTCAACGAAAAGAAGCGCC
TCACAGCCAGTGAGTTGTTCGAGCGCACTTTAGAATGCTATCTGACGTTG
GAGATTCAACGCAGCGAGAGCTTACCTCTTGGTCAGAGCCAGAACGCAAA
CCAGGCAGCCGAGGTGGACCAGTCTGTGTTCTCCTCGTCAGAATTGCCGA
ACATCACACCTGTGGACTATCTTCGTCGCCTCCTTGAGTTGGGCTATTGT
TCTAATTCTGCGCATATATTAGCGTTCTTCTACATTCGAAAGATCTCAAA
TCTACGGTTCGAATGGCTAGTAGTTAATGCTCACAGTATTCACCGTTTGC
TGCTCGCTGCCACCATGTTGGCGGCGAAGTTTGTAGATGATTATCATTAC
GACAACCCCCACTTTGCAAAGTTGGGAGGCGTGGATGTAGACGAGATCAA
CGATTTGGAAGAAGAGATGCTAAAGTTGTTGCACTACGATCTCTTTGTGA
GTGCTGAACAATATGCAGCCTTTGAACGATATATGGTGAGGGAGGTTCTC
TCCTTCGACGATCGGCAGTTCCTCGCACTTCGAGAGAAGCTCAGAACTTG
CGTATACTTCTGA
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