Ggra8651.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8651.t1
Unique NameGgra8651.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:291269..292204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1433126.BN938_1275
PFAMsGlyco_hydro_16
Max annot lvl976|Bacteroidetes
Evalue7.99e-23
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria,4NVAB@976|Bacteroidetes,2FV4Z@200643|Bacteroidia
DescriptionGlycosyl hydrolases family 16
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8651Ggra8651Gracilaria gracilis GNS1m malegenetig00000855_pilon 291269..292204 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8651.t1.stop1Ggra8651.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 291269..291271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8651.t1.CDS1Ggra8651.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 291269..292204 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8651.t1.exon1Ggra8651.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 291269..292204 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8651.t1.start1Ggra8651.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 292202..292204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8651.t1Ggra8651.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 291269..292204 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8651.t1 ID=Ggra8651.t1|Name=Ggra8651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp
MRRSFPPKWTDDESLPSSIPLPRAVSVPNDPNGFNDPPPSYISEQAPSGM
EWKKQFGFSSEFNTERSNEVVPMSQLNRWTTDNHWQGRYPAVFAENNVTF
NGKSMVLRVRQHRSPTAGFLRAFQNGHRRAIDERMREGLPFYTGSFVRSR
ETITYGFFETVVKMGDSGLSSAFWLKEIGGREREIDVFEYSSSPNLNGRR
RVPLANQFLMNVHSFERRGNNRIDHERSRFVNVDADLSRQRFVKIGLLWT
KEKVCWYLNDRLVRELNHAGEFRNAKMRVQFDREYFAWIGDPRPNDRYGD
FEVMYIRTWQL*
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spliced messenger RNA

>Ggra8651.t1 ID=Ggra8651.t1|Name=Ggra8651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000855_pilon:291269..292204- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGATCTTTTCCTCCCAAATGGACCGATGATGAAAGCCTCCCATC
ATCCATTCCACTCCCAAGAGCCGTATCCGTTCCAAATGACCCCAATGGCT
TTAACGATCCACCGCCGAGCTACATCTCTGAGCAAGCGCCATCCGGCATG
GAGTGGAAAAAACAGTTCGGCTTTTCCTCCGAGTTCAACACAGAACGATC
CAACGAAGTCGTACCCATGAGCCAGCTGAACCGATGGACCACCGACAATC
ATTGGCAAGGCCGATACCCAGCCGTGTTCGCCGAAAACAACGTGACATTC
AACGGAAAATCCATGGTCCTACGAGTGCGCCAGCATCGCAGCCCAACTGC
CGGCTTCCTTCGGGCGTTTCAGAACGGCCACCGAAGGGCAATCGACGAAA
GGATGAGAGAGGGGCTACCGTTTTACACAGGTTCATTTGTGCGAAGCAGG
GAGACAATCACGTACGGTTTCTTCGAGACCGTGGTGAAGATGGGAGATTC
GGGACTGTCAAGCGCGTTCTGGCTGAAGGAGATAGGTGGTAGAGAACGTG
AGATTGATGTATTCGAGTATAGCTCGAGCCCAAATCTTAACGGACGCCGG
CGCGTTCCCCTTGCCAACCAGTTCCTCATGAACGTGCATTCGTTCGAGAG
ACGTGGAAATAATAGGATAGACCATGAACGCTCGAGATTCGTTAATGTAG
ACGCTGATTTGAGCAGACAAAGGTTTGTTAAGATTGGGCTGCTATGGACA
AAGGAAAAGGTGTGCTGGTATCTCAACGACAGGCTGGTGAGGGAGCTGAA
TCATGCAGGGGAGTTTCGCAACGCGAAGATGCGTGTGCAGTTCGATCGTG
AGTACTTTGCATGGATTGGAGACCCACGACCCAATGATCGATACGGTGAT
TTCGAGGTGATGTACATTCGAACCTGGCAATTGTAA
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protein sequence of Ggra8651.t1

>Ggra8651.t1 ID=Ggra8651.t1|Name=Ggra8651.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MRRSFPPKWTDDESLPSSIPLPRAVSVPNDPNGFNDPPPSYISEQAPSGM
EWKKQFGFSSEFNTERSNEVVPMSQLNRWTTDNHWQGRYPAVFAENNVTF
NGKSMVLRVRQHRSPTAGFLRAFQNGHRRAIDERMREGLPFYTGSFVRSR
ETITYGFFETVVKMGDSGLSSAFWLKEIGGREREIDVFEYSSSPNLNGRR
RVPLANQFLMNVHSFERRGNNRIDHERSRFVNVDADLSRQRFVKIGLLWT
KEKVCWYLNDRLVRELNHAGEFRNAKMRVQFDREYFAWIGDPRPNDRYGD
FEVMYIRTWQL*
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mRNA from alignment at tig00000855_pilon:291269..292204-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8651.t1 ID=Ggra8651.t1|Name=Ggra8651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000855_pilon:291269..292204- (Gracilaria gracilis GNS1m male)
ATGCGAAGATCTTTTCCTCCCAAATGGACCGATGATGAAAGCCTCCCATC
ATCCATTCCACTCCCAAGAGCCGTATCCGTTCCAAATGACCCCAATGGCT
TTAACGATCCACCGCCGAGCTACATCTCTGAGCAAGCGCCATCCGGCATG
GAGTGGAAAAAACAGTTCGGCTTTTCCTCCGAGTTCAACACAGAACGATC
CAACGAAGTCGTACCCATGAGCCAGCTGAACCGATGGACCACCGACAATC
ATTGGCAAGGCCGATACCCAGCCGTGTTCGCCGAAAACAACGTGACATTC
AACGGAAAATCCATGGTCCTACGAGTGCGCCAGCATCGCAGCCCAACTGC
CGGCTTCCTTCGGGCGTTTCAGAACGGCCACCGAAGGGCAATCGACGAAA
GGATGAGAGAGGGGCTACCGTTTTACACAGGTTCATTTGTGCGAAGCAGG
GAGACAATCACGTACGGTTTCTTCGAGACCGTGGTGAAGATGGGAGATTC
GGGACTGTCAAGCGCGTTCTGGCTGAAGGAGATAGGTGGTAGAGAACGTG
AGATTGATGTATTCGAGTATAGCTCGAGCCCAAATCTTAACGGACGCCGG
CGCGTTCCCCTTGCCAACCAGTTCCTCATGAACGTGCATTCGTTCGAGAG
ACGTGGAAATAATAGGATAGACCATGAACGCTCGAGATTCGTTAATGTAG
ACGCTGATTTGAGCAGACAAAGGTTTGTTAAGATTGGGCTGCTATGGACA
AAGGAAAAGGTGTGCTGGTATCTCAACGACAGGCTGGTGAGGGAGCTGAA
TCATGCAGGGGAGTTTCGCAACGCGAAGATGCGTGTGCAGTTCGATCGTG
AGTACTTTGCATGGATTGGAGACCCACGACCCAATGATCGATACGGTGAT
TTCGAGGTGATGTACATTCGAACCTGGCAATTGTAA
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Coding sequence (CDS) from alignment at tig00000855_pilon:291269..292204-

>Ggra8651.t1 ID=Ggra8651.t1|Name=Ggra8651.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000855_pilon:291269..292204- (Gracilaria gracilis GNS1m male)
ATGCGAAGATCTTTTCCTCCCAAATGGACCGATGATGAAAGCCTCCCATC
ATCCATTCCACTCCCAAGAGCCGTATCCGTTCCAAATGACCCCAATGGCT
TTAACGATCCACCGCCGAGCTACATCTCTGAGCAAGCGCCATCCGGCATG
GAGTGGAAAAAACAGTTCGGCTTTTCCTCCGAGTTCAACACAGAACGATC
CAACGAAGTCGTACCCATGAGCCAGCTGAACCGATGGACCACCGACAATC
ATTGGCAAGGCCGATACCCAGCCGTGTTCGCCGAAAACAACGTGACATTC
AACGGAAAATCCATGGTCCTACGAGTGCGCCAGCATCGCAGCCCAACTGC
CGGCTTCCTTCGGGCGTTTCAGAACGGCCACCGAAGGGCAATCGACGAAA
GGATGAGAGAGGGGCTACCGTTTTACACAGGTTCATTTGTGCGAAGCAGG
GAGACAATCACGTACGGTTTCTTCGAGACCGTGGTGAAGATGGGAGATTC
GGGACTGTCAAGCGCGTTCTGGCTGAAGGAGATAGGTGGTAGAGAACGTG
AGATTGATGTATTCGAGTATAGCTCGAGCCCAAATCTTAACGGACGCCGG
CGCGTTCCCCTTGCCAACCAGTTCCTCATGAACGTGCATTCGTTCGAGAG
ACGTGGAAATAATAGGATAGACCATGAACGCTCGAGATTCGTTAATGTAG
ACGCTGATTTGAGCAGACAAAGGTTTGTTAAGATTGGGCTGCTATGGACA
AAGGAAAAGGTGTGCTGGTATCTCAACGACAGGCTGGTGAGGGAGCTGAA
TCATGCAGGGGAGTTTCGCAACGCGAAGATGCGTGTGCAGTTCGATCGTG
AGTACTTTGCATGGATTGGAGACCCACGACCCAATGATCGATACGGTGAT
TTCGAGGTGATGTACATTCGAACCTGGCAATTGTAA
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