Ggra8646.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8646.t1
Unique NameGgra8646.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:224714..229883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000022910
PFAMsAmidohydro_1,M20_dimer,Peptidase_M20
Max annot lvl121069|Pythiales
Evalue2.96e-22
EggNOG OGsCOG0402@1|root,COG0624@1|root,KOG2275@2759|Eukaryota,KOG3968@2759|Eukaryota,1MB0V@121069|Pythiales
Descriptionprotein.. Source PGD
COG categoryEFQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8646Ggra8646Gracilaria gracilis GNS1m malegenetig00000855_pilon 224714..229883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8646.t1Ggra8646.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 224714..229883 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8646.t1.start1Ggra8646.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 224714..224716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8646.t1.CDS1Ggra8646.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 224714..224904 +
Ggra8646.t1.CDS2Ggra8646.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000855_pilon 227285..227812 +
Ggra8646.t1.CDS3Ggra8646.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000855_pilon 229607..229883 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8646.t1.exon1Ggra8646.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 224714..224904 +
Ggra8646.t1.exon2Ggra8646.t1.exon2Gracilaria gracilis GNS1m maleexontig00000855_pilon 227285..227812 +
Ggra8646.t1.exon3Ggra8646.t1.exon3Gracilaria gracilis GNS1m maleexontig00000855_pilon 229607..229883 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8646.t1.intron1Ggra8646.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000855_pilon 224905..227284 +
Ggra8646.t1.intron2Ggra8646.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000855_pilon 227813..229606 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8646.t1.stop1Ggra8646.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 229881..229883 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8646.t1 ID=Ggra8646.t1|Name=Ggra8646.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MDAAGGMRQRIVAGPDYNMAQLGEAVGEPRDTALDVKHLDLEHASSSWMR
SNYFSHAAEIELGNNPNSDHHVVTLTQQEVNIPSPSGFEQRAFQHAKSWF
VVRGWKVVTHPVPPLFTLLATIASDSSVRALLSTHLEVVPGAAHSCLAHG
RLYGRGAVDAKRQAASLMLASASLRDERVALLLVPGEETDHDGMAAAQAF
GVPRNITLMNEEPTEAKLVEKQKGMLKVMHKANSVSAHSGPTRAPGLVSA
WMNHVSINGPEAIAALVLLVNCAVRPIPFAHEQLVTPETIIANDPQESIK
EMCQKIAVDAPERVVVLDTKTKSRRFDSERK*
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spliced messenger RNA

>Ggra8646.t1 ID=Ggra8646.t1|Name=Ggra8646.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000855_pilon:224714..229883+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCAGCAGGTGGCATGCGACAGAGAATTGTTGCAGGGCCTGATTA
CAACATGGCGCAGCTAGGAGAAGCTGTCGGAGAACCCAGAGACACTGCTC
TGGATGTCAAACATCTGGATCTCGAACATGCCTCAAGCAGCTGGATGAGA
AGCAACTATTTTTCCCACGCTGCCGAGATCGAACTCGGAAACAATCCCAA
CTCTGATCATCACGTGGTCACCCTCACGCAGCAGGAGGTAAACATTCCAA
GTCCAAGTGGATTCGAGCAACGCGCATTTCAACACGCGAAGAGCTGGTTT
GTCGTGCGAGGTTGGAAAGTCGTCACACATCCTGTACCACCGTTGTTTAC
GCTCCTCGCCACGATAGCTTCCGATTCTTCCGTGCGCGCCCTGCTGTCCA
CTCATCTCGAAGTTGTGCCTGGTGCCGCCCACTCGTGTTTAGCACACGGC
CGTCTGTACGGAAGAGGCGCTGTGGATGCCAAGAGACAGGCTGCCTCGCT
TATGCTTGCCTCGGCCAGTCTGCGCGATGAACGTGTAGCTCTCTTGCTTG
TTCCTGGCGAGGAGACCGATCACGATGGGATGGCAGCCGCACAAGCGTTT
GGCGTGCCTCGTAATATCACGCTGATGAATGAGGAGCCCACAGAAGCCAA
ACTTGTGGAGAAACAGAAGGGAATGCTCAAAGTGATGCACAAAGCGAACA
GTGTATCAGCGCACAGTGGACCCACAAGAGCACCAGGTCTTGTCAGCGCC
TGGATGAATCACGTATCTATCAACGGCCCAGAAGCCATTGCAGCGCTCGT
TTTGCTGGTCAACTGCGCCGTGCGACCCATCCCGTTTGCACACGAGCAGC
TTGTCACACCCGAGACGATCATTGCTAATGATCCGCAAGAAAGCATCAAG
GAAATGTGCCAGAAAATTGCCGTTGATGCGCCGGAACGCGTTGTTGTTCT
GGACACCAAGACAAAGTCGCGACGCTTCGATTCCGAACGAAAGTGA
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protein sequence of Ggra8646.t1

>Ggra8646.t1 ID=Ggra8646.t1|Name=Ggra8646.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MDAAGGMRQRIVAGPDYNMAQLGEAVGEPRDTALDVKHLDLEHASSSWMR
SNYFSHAAEIELGNNPNSDHHVVTLTQQEVNIPSPSGFEQRAFQHAKSWF
VVRGWKVVTHPVPPLFTLLATIASDSSVRALLSTHLEVVPGAAHSCLAHG
RLYGRGAVDAKRQAASLMLASASLRDERVALLLVPGEETDHDGMAAAQAF
GVPRNITLMNEEPTEAKLVEKQKGMLKVMHKANSVSAHSGPTRAPGLVSA
WMNHVSINGPEAIAALVLLVNCAVRPIPFAHEQLVTPETIIANDPQESIK
EMCQKIAVDAPERVVVLDTKTKSRRFDSERK*
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mRNA from alignment at tig00000855_pilon:224714..229883+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8646.t1 ID=Ggra8646.t1|Name=Ggra8646.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=5170bp|location=Sequence derived from alignment at tig00000855_pilon:224714..229883+ (Gracilaria gracilis GNS1m male)
ATGGACGCAGCAGGTGGCATGCGACAGAGAATTGTTGCAGGGCCTGATTA
CAACATGGCGCAGCTAGGAGAAGCTGTCGGAGAACCCAGAGACACTGCTC
TGGATGTCAAACATCTGGATCTCGAACATGCCTCAAGCAGCTGGATGAGA
AGCAACTATTTTTCCCACGCTGCCGAGATCGAACTCGGAAAGTAAGTGGT
TTGATGGGAAGCAGGAGCTTTGCCCACGCTACAGTTGCTGAACACAGACC
AGACGGTACCGTGCCAGCGCGCAAGAACAGTATGCAACAGAGAGAAGTTG
TTGGAGCCTGTCAATTCACaccgctagaggccggcagacacgctgtagtc
agcgcacaattgtctgcagccgaaagacgctgtaggcagcgcagatcggc
agcagccgggtaagacgctgagtcagcgcagaacggcagcagccgggtaa
gacgctgagtgagcgcagaacggcaagcagccgcaaagacgctgtaggca
gcgcaaaaacggctagtggccggaagacgctgtagtcagcgcagaacggc
tagtagccagaagacgctgagtcagcgcagaacggctagtagccggaaga
cgctgagtcagggcagaagggctagtagccataaagacactgtagtcagc
gcaattgaacttgctgccaaaggatgctgtaggcagcacgaatattataa
gtttaagctggtgctgcggtataactactggccgttggacatgaccaata
ctctccgagcattgcccatggaggcagtgttgatccaccttgaagacaag
gcgatctcgaccagcagttacaccttgatgggctgggttgccaaatgcaa
attgcagaaagcaacccacgcagattcaagtttgaatcgaatgcaccgcc
acctacaaaccgtaggtggcagatttagaacgtctacttaataaacaatt
ccagactctccacaggaggtctggggggcatccgcatctactgcgggact
tcctttggtgcccaaccttttgccttcgcctccttcatttttccatcggc
gcgcgcgcgcggcgacttcgaacctagacggaacaacagttggtggtcaa
aaacgactacagcggataggtttggctcatgcctacaaaggaaactacag
ctggagttgttccgaaactctcatcaaatggttcgccgcctttggtgttg
ttaatcagtgggtatctgaccggggatcgcattttaagaacgaagtcgtt
cggcttctcaaggtgagcactaagtcttctcaccattttactttagcgta
ttgcccctggtctaacagaactgtcgaagtcgtgtgtcgcgagttgctac
ctgctgtacgtgcactacttttggagtatcagttaccgcaaaacggctgg
ccaagcgtggtgcctgtggttcattcagctctgaacaattctatcctcga
ccgacttggaaagagctgccctctgacggtgtttactggtcataagcaag
ataccccgctcgctgctgtgacgagaaaagtcgggaagaagattcaagtg
ttcaatatcgacgaaattcgtgcaaagcaactcaaaagcatcaacgcttc
acagaaaaccctcgaaggcatgcacaaggacgtttcaattcgtgcaacga
agaaacaccgacaagcgattgagtcgcgcaaccgcaaaacaaacgtgcgc
gcaatcaactttggtgttggcgattttgtctcacatggtgtattgcaacg
tgaggtgtctcgaaagcccgcgttgaaatggattggaccttatcgcgtta
tcgaatgccattcagaatacatttttctgattgagtctttgctggacgga
accaaacaagaggtctacgggcgacgactgaagtttttccgtaacgagaa
gtttggtataacagaagagcttttaaactatctctgttattaacagggca
agctattggttgtggatcgtttcgaagatatagggcgtaagcacggcaag
gttcaactacttgtgaaatggcacggtttttcaagagaagagaccgattg
ggtcaagcttacttcgctacatgatgatgttccacttctcgtcaaagagt
atatgacagacgtttcaaagactggaacgcaacttcaacgctccatcgct
gctttaatctaggttactgtctccagttttcactttgacaataacgggcg
ctgatgtgtattctaaagcaccgctggtgcgtttaatacgcaaatgcgcg
ctgtatgacttcagtggcagacatgcgttgggctatcgtgaactctatca
atacatgtcttgcgcaactggctgaaggcttgatggcgtgtattgctccg
tgaattgatagtctgttatgtaaTCACAATTCTTCTTTCTTGCCAAGTCA
GCAACTAACTGGCTGGGCGAGTGGCTACATAAACGCTTACCAATTTCGGG
AAGAACCCACGTCCGGGGCAGGAGCAAGCCGGTGGGTGTACCCTTTCTTT
CTGCTGAATCAATCCCTTGAAGGGAAGAAGCCGAAACCGCCCGCATTGCG
TCATTCTGTAGATTGAACGAGCAATCCCAACTCTGATCATCACGTGGTCA
CCCTCACGCAGCAGGAGGTAAACATTCCAAGTCCAAGTGGATTCGAGCAA
CGCGCATTTCAACACGCGAAGAGCTGGTTTGTCGTGCGAGGTTGGAAAGT
CGTCACACATCCTGTACCACCGTTGTTTACGCTCCTCGCCACGATAGCTT
CCGATTCTTCCGTGCGCGCCCTGCTGTCCACTCATCTCGAAGTTGTGCCT
GGTGCCGCCCACTCGTGTTTAGCACACGGCCGTCTGTACGGAAGAGGCGC
TGTGGATGCCAAGAGACAGGCTGCCTCGCTTATGCTTGCCTCGGCCAGTC
TGCGCGATGAACGTGTAGCTCTCTTGCTTGTTCCTGGCGAGGAGACCGAT
CACGATGGGATGGCAGCCGCACAAGCGTTTGGCGTGCCTCGTAATATCAC
GCTGATGAATGAGGAGCCCACAGAAGCCAAACTTGTGGAGAAACAGAAGG
GAATGCTCAAAGTGATGCACAAAGCGAACAGTGTATCAGCGCACAGTGGG
TACCCAAATCTTGGTTGATCGGCCGTTCACGATCTGGTACAAGTCGTCAG
TGCTATTGTCAACACATGGCCGGACACTGGTGTGACAACCGTTAATGtta
taaaagatgagagacacgtggagtgaaccagcgcagagagcgccggagtt
gttcagctgtttttatagtcatgggcccagatacatgggtcgtgggttca
agtctcgcctggttcttgaaaacggacctgtacgctaccgctgtaggcgt
aatgcactgtaagaggtgctccacccaagctgtcttgcaaagctagagat
gggtcgacgtcctcacggaaagagaaggagtgtaaaagatgagtgacaag
tgcagggaaccagcgcagagagcgccggagttgctcagctgtttttatga
atgtgggTGTTATTGCGGGCGAGACTGCTTCTAATGTTCGGGACGGAGAA
GCGGCAGCTCGAGTGTTGTGGCAGTTATCGACAACAGTATCTGAAGTTTT
ATCGAAACTGGAACAGATATTGTCAGAACACGACCACGTTAGTTACGAGA
AAACTACCAGAAACGAGCCCTTGGCATTCTACGTAGCATTAAAAGCTGCG
TTCAGGATTGGCATAGGTCAAGTGGCGTAGAACACCGATGTGCCGTACTA
CAAGGGTGACTACAATTATGCGGTTCTATTCGGCGCCGGTAGTATAGAAC
AAGCACACACTCAAGACGAGTGGATATCGATTGAACAGCTTCAGAGACCT
CCTGACCAACTAGAGGTAATCGTATCAGAGTTGTTGCAAAGTTGATAGTT
AAGGGTGCGTTAGTTTACGGAGTGTATATATCTATTTTTCGGGCGGCAAT
ATTCACAGCTGGATGTTGAAAAAGTTCAGGTTAGCGCAACGAAGAAAGCG
AGTCTCTTTCATGTTCTGTGCCAAATGTGCGTTTCAAGGAAAGCAAGATG
CGTTCGAACGCAACCAATACAGCGTTCTTTCTTCGACTCTTGCCGTCAGA
CATAGAGGGATTGGGATACATTTGTGCACCAGGCCCTATTGCGGGCACTA
CAGAATCTTTAGCTGTCAGGAGCAGAAGAAGGCACACGAGACGAGCCCGA
CGATGAAAAGAAAGAATGAGGCCATCGCTGGCACAGGTGCTACTCAGTAG
CGATAGAAGAGTTCCACGTCGTCCTAGAAGACGCGGAACCATATTATGTT
ATCAGCAACAAAAATAAGGCAGGCTGATATGAACGATGGAGAGGACGGTT
CTATAAATGGGAAAGAAACGTAATAGAACAAAGTAATTGAAATGAGCAGC
AAATCTTGTGGCGTGGTTAGTCATGGTCATGATTCGTTCCACTCAGGGAC
ACTGCAGTTAATATGTCAAAAGTTACCTAAGGATGTGAAGTCACCGATTC
TCAACTTGGAAGTGCACTCCAATTCGAGGAAGTCTAGCCTGGGTCGGCTC
AAGAAGGGTTTTACTTTGGAGGGGTATAAGAGCGTTGTGAAGCTGTTGCT
GCAGTATTTGATGGAGAAGGAGCAGCGCTGAACGGCGAGAGACGAGTGTA
GATAGAACGAACAGTTGATGCTTTCTGTCGTTGTTGTTCAACGCTGGTAg
atggcgagtggcgatggcggtggcggtggtgatgacggtgacggtggacc
atattgctcgaccatggagcattggcgcgtgcgcgccacacgcgcgcgtg
GTGGCGCCACGACGGAGAGGAGCACGTCGACCATGACCACTATGACACCA
CCTGACAAACCTCGTCTACTCTCTTCGAGAAAATTCTTCACAGACCCACA
AGAGCACCAGGTCTTGTCAGCGCCTGGATGAATCACGTATCTATCAACGG
CCCAGAAGCCATTGCAGCGCTCGTTTTGCTGGTCAACTGCGCCGTGCGAC
CCATCCCGTTTGCACACGAGCAGCTTGTCACACCCGAGACGATCATTGCT
AATGATCCGCAAGAAAGCATCAAGGAAATGTGCCAGAAAATTGCCGTTGA
TGCGCCGGAACGCGTTGTTGTTCTGGACACCAAGACAAAGTCGCGACGCT
TCGATTCCGAACGAAAGTGA
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Coding sequence (CDS) from alignment at tig00000855_pilon:224714..229883+

>Ggra8646.t1 ID=Ggra8646.t1|Name=Ggra8646.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000855_pilon:224714..229883+ (Gracilaria gracilis GNS1m male)
ATGGACGCAGCAGGTGGCATGCGACAGAGAATTGTTGCAGGGCCTGATTA
CAACATGGCGCAGCTAGGAGAAGCTGTCGGAGAACCCAGAGACACTGCTC
TGGATGTCAAACATCTGGATCTCGAACATGCCTCAAGCAGCTGGATGAGA
AGCAACTATTTTTCCCACGCTGCCGAGATCGAACTCGGAAACAATCCCAA
CTCTGATCATCACGTGGTCACCCTCACGCAGCAGGAGGTAAACATTCCAA
GTCCAAGTGGATTCGAGCAACGCGCATTTCAACACGCGAAGAGCTGGTTT
GTCGTGCGAGGTTGGAAAGTCGTCACACATCCTGTACCACCGTTGTTTAC
GCTCCTCGCCACGATAGCTTCCGATTCTTCCGTGCGCGCCCTGCTGTCCA
CTCATCTCGAAGTTGTGCCTGGTGCCGCCCACTCGTGTTTAGCACACGGC
CGTCTGTACGGAAGAGGCGCTGTGGATGCCAAGAGACAGGCTGCCTCGCT
TATGCTTGCCTCGGCCAGTCTGCGCGATGAACGTGTAGCTCTCTTGCTTG
TTCCTGGCGAGGAGACCGATCACGATGGGATGGCAGCCGCACAAGCGTTT
GGCGTGCCTCGTAATATCACGCTGATGAATGAGGAGCCCACAGAAGCCAA
ACTTGTGGAGAAACAGAAGGGAATGCTCAAAGTGATGCACAAAGCGAACA
GTGTATCAGCGCACAGTGGACCCACAAGAGCACCAGGTCTTGTCAGCGCC
TGGATGAATCACGTATCTATCAACGGCCCAGAAGCCATTGCAGCGCTCGT
TTTGCTGGTCAACTGCGCCGTGCGACCCATCCCGTTTGCACACGAGCAGC
TTGTCACACCCGAGACGATCATTGCTAATGATCCGCAAGAAAGCATCAAG
GAAATGTGCCAGAAAATTGCCGTTGATGCGCCGGAACGCGTTGTTGTTCT
GGACACCAAGACAAAGTCGCGACGCTTCGATTCCGAACGAAAGTGA
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