Ggra8634.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8634.t1
Unique NameGgra8634.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:78189..79670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX34330
PFAMsAmino_oxidase,NAD_binding_8
Max annot lvl2759|Eukaryota
KEGG rclassRC00885
KEGG koko:K00231
KEGG ReactionR03222,R04178
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
GOsGO:0003674,GO:0003824,GO:0004729,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0040011,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0048870,GO:0051179,GO:0051186,GO:0051188,GO:0051674,GO:0055114,GO:0070818,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.81e-155
EggNOG OGsCOG1232@1|root,KOG1276@2759|Eukaryota
EC1.3.3.15,1.3.3.4
DescriptionCatalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8634Ggra8634Gracilaria gracilis GNS1m malegenetig00000196_pilon 78189..79670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8634.t1Ggra8634.t1Gracilaria gracilis GNS1m malepolypeptidetig00000196_pilon 78189..79670 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8634.t1.stop1Ggra8634.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000196_pilon 78189..78191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8634.t1.CDS1Ggra8634.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000196_pilon 78189..78561 -
Ggra8634.t1.CDS2Ggra8634.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000196_pilon 78676..79670 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8634.t1.exon1Ggra8634.t1.exon1Gracilaria gracilis GNS1m maleexontig00000196_pilon 78189..78561 -
Ggra8634.t1.exon2Ggra8634.t1.exon2Gracilaria gracilis GNS1m maleexontig00000196_pilon 78676..79670 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8634.t1.intron1Ggra8634.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000196_pilon 78562..78675 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8634.t1.start1Ggra8634.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000196_pilon 79668..79670 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8634.t1 ID=Ggra8634.t1|Name=Ggra8634.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp
MTVADPAPASAQTSTASVDVLVIGTGISGSSLSFNLHKYHPQLNVLTTEA
RSVVGGNVISRKQNGYVWEEGPNTFQPSEQIMRLAVDVGLKDELVLADST
LPRFVYWDDKLFALPLGPQDIPTFRLLSLPGAIRAGLGALGFVLPAPRGE
ESVKDFITRHLGREVFEKMIDPFVSGVYAGDPSKLAMQSAFKKIFALTKL
GGTQGILEGGIIRIGQKKREREQNPPDDDLPKWKGGALGSFKDGLGMLPN
AIRNQLGDKIKLEWRLVDVTRTEDSLYRAVYETPEGRKEIVTKAIAITTP
ASVAASTLKKLAPEVAALEKVYYPPVWSITLGAPDDMELLLSYIGGARDE
GIKELSEAEVVQAVDKDVKRILLKNDSQVEPVVVGARRWERAIPQYNIGH
QQVLDTAVEALKDEEGLFLGGNYVHGVAFGDCVAWGADYAPLIADYVNRM
AAVNK*
back to top

spliced messenger RNA

>Ggra8634.t1 ID=Ggra8634.t1|Name=Ggra8634.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000196_pilon:78189..79670- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTAGCAGATCCCGCTCCTGCGTCTGCACAGACCAGCACAGCATC
AGTTGACGTGCTCGTGATTGGCACGGGAATATCTGGTAGTTCGCTTTCCT
TCAATCTGCACAAATACCATCCGCAGTTGAATGTGCTCACCACCGAGGCG
CGCTCCGTTGTCGGTGGCAATGTGATTTCACGCAAACAGAATGGCTATGT
GTGGGAGGAAGGACCTAATACATTCCAGCCGTCGGAGCAAATCATGCGAC
TTGCGGTGGATGTGGGGCTCAAGGATGAACTTGTATTGGCTGATTCCACT
TTACCGCGATTCGTGTACTGGGACGACAAACTTTTTGCTTTACCTCTGGG
GCCACAGGATATCCCAACATTCAGGTTGCTCTCTCTACCAGGTGCTATTC
GCGCAGGACTGGGCGCACTGGGCTTCGTTCTCCCCGCCCCGCGTGGCGAA
GAAAGTGTGAAGGATTTCATCACGCGTCACCTTGGGCGCGAAGTGTTCGA
AAAGATGATTGATCCATTCGTGAGCGGTGTATACGCCGGAGATCCATCTA
AACTAGCCATGCAATCGGCGTTCAAGAAGATATTTGCGCTTACAAAGCTC
GGCGGCACGCAAGGAATTCTCGAGGGGGGTATCATCAGAATTGGCCAGAA
GAAGAGAGAGCGCGAGCAAAATCCGCCTGACGACGACCTGCCCAAGTGGA
AGGGCGGGGCGTTAGGAAGCTTTAAGGACGGGTTGGGGATGCTACCGAAC
GCAATCCGCAACCAGCTTGGCGATAAGATCAAGCTCGAGTGGCGACTGGT
GGATGTGACGCGCACGGAGGATTCTCTATACAGGGCGGTCTATGAAACAC
CTGAGGGGCGTAAAGAAATTGTGACAAAAGCTATTGCAATCACCACACCT
GCAAGTGTAGCCGCTTCCACGCTCAAGAAGCTGGCACCGGAAGTGGCAGC
TTTGGAAAAGGTGTACTACCCACCGGTGTGGAGCATAACGCTGGGGGCAC
CCGACGATATGGAACTGCTTCTGTCGTATATAGGCGGGGCACGCGACGAG
GGCATTAAGGAGCTGAGTGAGGCCGAAGTGGTGCAGGCTGTCGACAAGGA
TGTGAAACGCATTTTGCTGAAGAACGACTCGCAGGTGGAACCTGTTGTGG
TTGGGGCGAGGAGATGGGAGCGAGCTATTCCGCAGTACAATATCGGGCAT
CAACAGGTGTTGGACACGGCTGTAGAGGCTCTGAAAGACGAGGAGGGTTT
GTTCCTTGGGGGTAATTACGTTCATGGAGTGGCGTTTGGTGACTGCGTGG
CGTGGGGTGCGGACTACGCGCCGCTAATTGCAGATTACGTGAATCGAATG
GCAGCAGTGAACAAATAG
back to top

protein sequence of Ggra8634.t1

>Ggra8634.t1 ID=Ggra8634.t1|Name=Ggra8634.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=456bp
MTVADPAPASAQTSTASVDVLVIGTGISGSSLSFNLHKYHPQLNVLTTEA
RSVVGGNVISRKQNGYVWEEGPNTFQPSEQIMRLAVDVGLKDELVLADST
LPRFVYWDDKLFALPLGPQDIPTFRLLSLPGAIRAGLGALGFVLPAPRGE
ESVKDFITRHLGREVFEKMIDPFVSGVYAGDPSKLAMQSAFKKIFALTKL
GGTQGILEGGIIRIGQKKREREQNPPDDDLPKWKGGALGSFKDGLGMLPN
AIRNQLGDKIKLEWRLVDVTRTEDSLYRAVYETPEGRKEIVTKAIAITTP
ASVAASTLKKLAPEVAALEKVYYPPVWSITLGAPDDMELLLSYIGGARDE
GIKELSEAEVVQAVDKDVKRILLKNDSQVEPVVVGARRWERAIPQYNIGH
QQVLDTAVEALKDEEGLFLGGNYVHGVAFGDCVAWGADYAPLIADYVNRM
AAVNK*
back to top

mRNA from alignment at tig00000196_pilon:78189..79670-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8634.t1 ID=Ggra8634.t1|Name=Ggra8634.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000196_pilon:78189..79670- (Gracilaria gracilis GNS1m male)
ATGACTGTAGCAGATCCCGCTCCTGCGTCTGCACAGACCAGCACAGCATC
AGTTGACGTGCTCGTGATTGGCACGGGAATATCTGGTAGTTCGCTTTCCT
TCAATCTGCACAAATACCATCCGCAGTTGAATGTGCTCACCACCGAGGCG
CGCTCCGTTGTCGGTGGCAATGTGATTTCACGCAAACAGAATGGCTATGT
GTGGGAGGAAGGACCTAATACATTCCAGCCGTCGGAGCAAATCATGCGAC
TTGCGGTGGATGTGGGGCTCAAGGATGAACTTGTATTGGCTGATTCCACT
TTACCGCGATTCGTGTACTGGGACGACAAACTTTTTGCTTTACCTCTGGG
GCCACAGGATATCCCAACATTCAGGTTGCTCTCTCTACCAGGTGCTATTC
GCGCAGGACTGGGCGCACTGGGCTTCGTTCTCCCCGCCCCGCGTGGCGAA
GAAAGTGTGAAGGATTTCATCACGCGTCACCTTGGGCGCGAAGTGTTCGA
AAAGATGATTGATCCATTCGTGAGCGGTGTATACGCCGGAGATCCATCTA
AACTAGCCATGCAATCGGCGTTCAAGAAGATATTTGCGCTTACAAAGCTC
GGCGGCACGCAAGGAATTCTCGAGGGGGGTATCATCAGAATTGGCCAGAA
GAAGAGAGAGCGCGAGCAAAATCCGCCTGACGACGACCTGCCCAAGTGGA
AGGGCGGGGCGTTAGGAAGCTTTAAGGACGGGTTGGGGATGCTACCGAAC
GCAATCCGCAACCAGCTTGGCGATAAGATCAAGCTCGAGTGGCGACTGGT
GGATGTGACGCGCACGGAGGATTCTCTATACAGGGCGGTCTATGAAACAC
CTGAGGGGCGTAAAGAAATTGTGACAAAAGCTATTGCAATCACCACACCT
GCAAGTGTAGCCGCTTCCACGCTCAAGAAGCTGGCACCGGAAGTGGCAGC
TTTGGAAAAGGTGTACTACCCACCGGTGTGGAGCATAACGCTGGGGTATC
CCAAGAGTGAGTTCAAGGAGCCGTTGCGAGGATTCGGTAACCTAATTCCG
CGAAAGCTGGGCATCAGGACGTTGGGTACTATATGGTCAAGCGTATTGTT
CCCCGGCAGGGCACCCGACGATATGGAACTGCTTCTGTCGTATATAGGCG
GGGCACGCGACGAGGGCATTAAGGAGCTGAGTGAGGCCGAAGTGGTGCAG
GCTGTCGACAAGGATGTGAAACGCATTTTGCTGAAGAACGACTCGCAGGT
GGAACCTGTTGTGGTTGGGGCGAGGAGATGGGAGCGAGCTATTCCGCAGT
ACAATATCGGGCATCAACAGGTGTTGGACACGGCTGTAGAGGCTCTGAAA
GACGAGGAGGGTTTGTTCCTTGGGGGTAATTACGTTCATGGAGTGGCGTT
TGGTGACTGCGTGGCGTGGGGTGCGGACTACGCGCCGCTAATTGCAGATT
ACGTGAATCGAATGGCAGCAGTGAACAAATAG
back to top

Coding sequence (CDS) from alignment at tig00000196_pilon:78189..79670-

>Ggra8634.t1 ID=Ggra8634.t1|Name=Ggra8634.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00000196_pilon:78189..79670- (Gracilaria gracilis GNS1m male)
ATGACTGTAGCAGATCCCGCTCCTGCGTCTGCACAGACCAGCACAGCATC
AGTTGACGTGCTCGTGATTGGCACGGGAATATCTGGTAGTTCGCTTTCCT
TCAATCTGCACAAATACCATCCGCAGTTGAATGTGCTCACCACCGAGGCG
CGCTCCGTTGTCGGTGGCAATGTGATTTCACGCAAACAGAATGGCTATGT
GTGGGAGGAAGGACCTAATACATTCCAGCCGTCGGAGCAAATCATGCGAC
TTGCGGTGGATGTGGGGCTCAAGGATGAACTTGTATTGGCTGATTCCACT
TTACCGCGATTCGTGTACTGGGACGACAAACTTTTTGCTTTACCTCTGGG
GCCACAGGATATCCCAACATTCAGGTTGCTCTCTCTACCAGGTGCTATTC
GCGCAGGACTGGGCGCACTGGGCTTCGTTCTCCCCGCCCCGCGTGGCGAA
GAAAGTGTGAAGGATTTCATCACGCGTCACCTTGGGCGCGAAGTGTTCGA
AAAGATGATTGATCCATTCGTGAGCGGTGTATACGCCGGAGATCCATCTA
AACTAGCCATGCAATCGGCGTTCAAGAAGATATTTGCGCTTACAAAGCTC
GGCGGCACGCAAGGAATTCTCGAGGGGGGTATCATCAGAATTGGCCAGAA
GAAGAGAGAGCGCGAGCAAAATCCGCCTGACGACGACCTGCCCAAGTGGA
AGGGCGGGGCGTTAGGAAGCTTTAAGGACGGGTTGGGGATGCTACCGAAC
GCAATCCGCAACCAGCTTGGCGATAAGATCAAGCTCGAGTGGCGACTGGT
GGATGTGACGCGCACGGAGGATTCTCTATACAGGGCGGTCTATGAAACAC
CTGAGGGGCGTAAAGAAATTGTGACAAAAGCTATTGCAATCACCACACCT
GCAAGTGTAGCCGCTTCCACGCTCAAGAAGCTGGCACCGGAAGTGGCAGC
TTTGGAAAAGGTGTACTACCCACCGGTGTGGAGCATAACGCTGGGGGCAC
CCGACGATATGGAACTGCTTCTGTCGTATATAGGCGGGGCACGCGACGAG
GGCATTAAGGAGCTGAGTGAGGCCGAAGTGGTGCAGGCTGTCGACAAGGA
TGTGAAACGCATTTTGCTGAAGAACGACTCGCAGGTGGAACCTGTTGTGG
TTGGGGCGAGGAGATGGGAGCGAGCTATTCCGCAGTACAATATCGGGCAT
CAACAGGTGTTGGACACGGCTGTAGAGGCTCTGAAAGACGAGGAGGGTTT
GTTCCTTGGGGGTAATTACGTTCATGGAGTGGCGTTTGGTGACTGCGTGG
CGTGGGGTGCGGACTACGCGCCGCTAATTGCAGATTACGTGAATCGAATG
GCAGCAGTGAACAAATAG
back to top