Ggra8627.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8627.t1
Unique NameGgra8627.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000086_piloncontigtig00000086_pilon:28131..29228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702863.1
PFAMsKH_1,STAR_dimer
Max annot lvl2759|Eukaryota
KEGG koko:K14945
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048577,GO:0048579,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048586,GO:0048587,GO:0050789,GO:0050793,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:0097159,GO:1901363,GO:2000026,GO:2000028,GO:2000241,GO:2000242
Evalue1.87e-56
EggNOG OGsCOG5176@1|root,KOG1588@2759|Eukaryota
DescriptionRNA binding
COG categoryA
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8627Ggra8627Gracilaria gracilis GNS1m malegenetig00000086_pilon 28131..29228 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8627.t1.start1Ggra8627.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000086_pilon 28131..28133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8627.t1.CDS1Ggra8627.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000086_pilon 28131..29228 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8627.t1.exon1Ggra8627.t1.exon1Gracilaria gracilis GNS1m maleexontig00000086_pilon 28131..29228 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8627.t1.stop1Ggra8627.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000086_pilon 29226..29228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8627.t1Ggra8627.t1Gracilaria gracilis GNS1m malepolypeptidetig00000086_pilon 28131..29228 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8627.t1 ID=Ggra8627.t1|Name=Ggra8627.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MPARALFLPSSSPASSPSPSPAPSPAPSPARPSSPRQASRLLHQLLRERD
AIAHLRASLPKLCALLDAEIQRCRAACSPSSARRRVKLLVPADKFPDYNF
VGRLLGPRGTTLKTLQRDSGCRIMIRGKGSIRKDKEPDVRGKPGWEHVFH
EPLHVVIEAPDTLPERAAAAALSRATDAVELLLVPVPEERDALKRHQLRA
LAIMNGTFRGARAFAPEPEPLAPLSLQPPPLAPRALKSPPPRVSARAGAR
AAAAAAAASTSLPDFSPLSAQLLRVSGLDDLALASMRNRSAESSPPQPEV
KVAASTALSAGGFIGREFYNGAFSNGAVLGSSSSSRAAWDDTACSSPSLS
ISASAATSSFEALRY*
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spliced messenger RNA

>Ggra8627.t1 ID=Ggra8627.t1|Name=Ggra8627.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000086_pilon:28131..29228+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgcccgcgcgcgcgctcTTCCTGCCGTCGTCGTCGCCGGCGTCGTCGCC
CTCGCCGTCGCCCGCGCCGTCGCCCGCGCCGTCGCCCGCGCGCCCGTCGT
CGCCGCGACAGGCGTCGCGCCTGCTGCACCAGCTGCTGCGCGAGCGCGAC
GCCATCGCGCACCTGCGCGCGTCGCTGCCCAAGTTATGCGCGCTGCTGGA
CGCCGAGATCCAGCGCTGCCGCGCGGCGTGCTCGCCGTCGTCGGCGCGGC
GTCGCGTCAAGCTGCTGGTGCCCGCCGACAAGTTCCCGGACTACAACTTC
GTGGGGCGTCTGCTGGGGCCGCGCGGCACCACGCTCAAGACGCTGCAGCG
CGACTCGGGCTGCCGCATCATGATCCGCGGCAAGGGCAGCATCCGCAAGG
ACAAGGAGCCCGACGTGCGTGGCAAGCCCGGCTGGGAGCACGTCTTCCAC
GAGCCGCTGCACGTCGTCATCGAGGCGCCTGACACGCTGCCCGAGCGcgc
ggccgccgccgcgctgtcgcgcgccacggacgccgTGGAGCTGTTGCTGG
TGCCCGTGCCCGAGGAGCGCGACGCGCTCAAGCGCCACCAGCTGCGCGCG
CTCGCCATCATGAACGGCACCTTCCGCGGCGCGCGCGCCTTCGCGCCGGA
GCCCGAGCCGCTGGCGCCGCTGTCGCTTCAGCCGCCACCGTTGgcgccgc
gcgcgctcaagtcgccgccgccgcgcgtgtccgcgcgcgccggagcgcgc
gctgccgccgccgccgccgccgcTTCCACGTCACTGCCCGATTTTTCGCC
GCTCAGCGCGCAGCTGCTGCGCGTCAGCGGCTTGGACGATCTGGCGCTCG
CCTCCATGCGCAACCGCAGCGCCGAGTCGTCTCCGCCGCAGCCGGAGGTG
AAGGTGGCGGCCAGCACGGCGCTCAGCGCCGGCGGCTTCATCGGGCGCGA
GTTTTATAACGGCGCCTTCTCCAACGGCGCCGTGTTGGGCTCGTCGTCGT
CGTCGCGCGCCGCTTGGGATGACACGGCGTGCTCGTCGCCTTCGCTTTCC
ATCTCGGCGTCCGCCGCCACCTCGTCGTTCGAGGCTCTTCGCTACTAG
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protein sequence of Ggra8627.t1

>Ggra8627.t1 ID=Ggra8627.t1|Name=Ggra8627.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MPARALFLPSSSPASSPSPSPAPSPAPSPARPSSPRQASRLLHQLLRERD
AIAHLRASLPKLCALLDAEIQRCRAACSPSSARRRVKLLVPADKFPDYNF
VGRLLGPRGTTLKTLQRDSGCRIMIRGKGSIRKDKEPDVRGKPGWEHVFH
EPLHVVIEAPDTLPERAAAAALSRATDAVELLLVPVPEERDALKRHQLRA
LAIMNGTFRGARAFAPEPEPLAPLSLQPPPLAPRALKSPPPRVSARAGAR
AAAAAAAASTSLPDFSPLSAQLLRVSGLDDLALASMRNRSAESSPPQPEV
KVAASTALSAGGFIGREFYNGAFSNGAVLGSSSSSRAAWDDTACSSPSLS
ISASAATSSFEALRY*
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mRNA from alignment at tig00000086_pilon:28131..29228+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8627.t1 ID=Ggra8627.t1|Name=Ggra8627.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000086_pilon:28131..29228+ (Gracilaria gracilis GNS1m male)
atgcccgcgcgcgcgctcTTCCTGCCGTCGTCGTCGCCGGCGTCGTCGCC
CTCGCCGTCGCCCGCGCCGTCGCCCGCGCCGTCGCCCGCGCGCCCGTCGT
CGCCGCGACAGGCGTCGCGCCTGCTGCACCAGCTGCTGCGCGAGCGCGAC
GCCATCGCGCACCTGCGCGCGTCGCTGCCCAAGTTATGCGCGCTGCTGGA
CGCCGAGATCCAGCGCTGCCGCGCGGCGTGCTCGCCGTCGTCGGCGCGGC
GTCGCGTCAAGCTGCTGGTGCCCGCCGACAAGTTCCCGGACTACAACTTC
GTGGGGCGTCTGCTGGGGCCGCGCGGCACCACGCTCAAGACGCTGCAGCG
CGACTCGGGCTGCCGCATCATGATCCGCGGCAAGGGCAGCATCCGCAAGG
ACAAGGAGCCCGACGTGCGTGGCAAGCCCGGCTGGGAGCACGTCTTCCAC
GAGCCGCTGCACGTCGTCATCGAGGCGCCTGACACGCTGCCCGAGCGcgc
ggccgccgccgcgctgtcgcgcgccacggacgccgTGGAGCTGTTGCTGG
TGCCCGTGCCCGAGGAGCGCGACGCGCTCAAGCGCCACCAGCTGCGCGCG
CTCGCCATCATGAACGGCACCTTCCGCGGCGCGCGCGCCTTCGCGCCGGA
GCCCGAGCCGCTGGCGCCGCTGTCGCTTCAGCCGCCACCGTTGgcgccgc
gcgcgctcaagtcgccgccgccgcgcgtgtccgcgcgcgccggagcgcgc
gctgccgccgccgccgccgccgcTTCCACGTCACTGCCCGATTTTTCGCC
GCTCAGCGCGCAGCTGCTGCGCGTCAGCGGCTTGGACGATCTGGCGCTCG
CCTCCATGCGCAACCGCAGCGCCGAGTCGTCTCCGCCGCAGCCGGAGGTG
AAGGTGGCGGCCAGCACGGCGCTCAGCGCCGGCGGCTTCATCGGGCGCGA
GTTTTATAACGGCGCCTTCTCCAACGGCGCCGTGTTGGGCTCGTCGTCGT
CGTCGCGCGCCGCTTGGGATGACACGGCGTGCTCGTCGCCTTCGCTTTCC
ATCTCGGCGTCCGCCGCCACCTCGTCGTTCGAGGCTCTTCGCTACTAG
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Coding sequence (CDS) from alignment at tig00000086_pilon:28131..29228+

>Ggra8627.t1 ID=Ggra8627.t1|Name=Ggra8627.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000086_pilon:28131..29228+ (Gracilaria gracilis GNS1m male)
atgcccgcgcgcgcgctcTTCCTGCCGTCGTCGTCGCCGGCGTCGTCGCC
CTCGCCGTCGCCCGCGCCGTCGCCCGCGCCGTCGCCCGCGCGCCCGTCGT
CGCCGCGACAGGCGTCGCGCCTGCTGCACCAGCTGCTGCGCGAGCGCGAC
GCCATCGCGCACCTGCGCGCGTCGCTGCCCAAGTTATGCGCGCTGCTGGA
CGCCGAGATCCAGCGCTGCCGCGCGGCGTGCTCGCCGTCGTCGGCGCGGC
GTCGCGTCAAGCTGCTGGTGCCCGCCGACAAGTTCCCGGACTACAACTTC
GTGGGGCGTCTGCTGGGGCCGCGCGGCACCACGCTCAAGACGCTGCAGCG
CGACTCGGGCTGCCGCATCATGATCCGCGGCAAGGGCAGCATCCGCAAGG
ACAAGGAGCCCGACGTGCGTGGCAAGCCCGGCTGGGAGCACGTCTTCCAC
GAGCCGCTGCACGTCGTCATCGAGGCGCCTGACACGCTGCCCGAGCGcgc
ggccgccgccgcgctgtcgcgcgccacggacgccgTGGAGCTGTTGCTGG
TGCCCGTGCCCGAGGAGCGCGACGCGCTCAAGCGCCACCAGCTGCGCGCG
CTCGCCATCATGAACGGCACCTTCCGCGGCGCGCGCGCCTTCGCGCCGGA
GCCCGAGCCGCTGGCGCCGCTGTCGCTTCAGCCGCCACCGTTGgcgccgc
gcgcgctcaagtcgccgccgccgcgcgtgtccgcgcgcgccggagcgcgc
gctgccgccgccgccgccgccgcTTCCACGTCACTGCCCGATTTTTCGCC
GCTCAGCGCGCAGCTGCTGCGCGTCAGCGGCTTGGACGATCTGGCGCTCG
CCTCCATGCGCAACCGCAGCGCCGAGTCGTCTCCGCCGCAGCCGGAGGTG
AAGGTGGCGGCCAGCACGGCGCTCAGCGCCGGCGGCTTCATCGGGCGCGA
GTTTTATAACGGCGCCTTCTCCAACGGCGCCGTGTTGGGCTCGTCGTCGT
CGTCGCGCGCCGCTTGGGATGACACGGCGTGCTCGTCGCCTTCGCTTTCC
ATCTCGGCGTCCGCCGCCACCTCGTCGTTCGAGGCTCTTCGCTACTAG
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