Ggra8587.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8587.t1
Unique NameGgra8587.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:273090..274022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8587Ggra8587Gracilaria gracilis GNS1m malegenetig00000116_pilon 273090..274022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8587.t1Ggra8587.t1Gracilaria gracilis GNS1m malepolypeptidetig00000116_pilon 273090..274022 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8587.t1.start1Ggra8587.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000116_pilon 273090..273092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8587.t1.CDS1Ggra8587.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000116_pilon 273090..273336 +
Ggra8587.t1.CDS2Ggra8587.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000116_pilon 273442..274022 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8587.t1.exon1Ggra8587.t1.exon1Gracilaria gracilis GNS1m maleexontig00000116_pilon 273090..273336 +
Ggra8587.t1.exon2Ggra8587.t1.exon2Gracilaria gracilis GNS1m maleexontig00000116_pilon 273442..274022 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8587.t1.intron1Ggra8587.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000116_pilon 273337..273441 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8587.t1.stop1Ggra8587.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000116_pilon 274020..274022 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8587.t1 ID=Ggra8587.t1|Name=Ggra8587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp
MHKCDLEEFDLFLTLSSAIGLARNDMIGTVLHHVTADSDITLVVQMIVSN
RVSDCDEFQSGVRASKDRAVVKGLAVQFNPSEARVVFNRLYQTRISKSTD
SFDSNYPVYLELANMIKKDIWKCLHKELNLMRGARRYKSVRAEFHSHISS
SEKKLEDIYPVLRAAQKSWILNEFMKEALKRDKKSTAEAAKKKTAKEKEK
NVFNASTSRLRTKSGLQQVLEKMTVVIRGAGYVTPTEKDCNPVMVEVTDE
IRANSSAPQPVMCVADDESSHRQTL*
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spliced messenger RNA

>Ggra8587.t1 ID=Ggra8587.t1|Name=Ggra8587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000116_pilon:273090..274022+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATAAGTGCGATTTGGAAGAATTTGATTTATTTCTGACTCTTTCTTC
GGCTATCGGCTTAGCCAGGAACGATATGATTGGTACGGTTTTGCATCACG
TTACGGCTGACAGCGATATCACTCTGGTAGTACAGATGATCGTGTCGAAT
CGAGTATCGGATTGTGATGAATTCCAGTCTGGTGTACGTGCTTCAAAAGA
CAGAGCGGTAGTAAAGGGACTGGCAGTGCAGTTTAATCCTTCAGAGGCTC
GAGTTGTATTCAATCGCCTGTATCAAACCCGAATAAGCAAAAGCACAGAT
TCGTTCGACTCAAACTATCCCGTGTACTTAGAGCTTGCGAATATGATCAA
GAAAGATATCTGGAAGTGTCTTCATAAGGAGCTAAACTTAATGCGAGGGG
CCCGCAGATACAAGTCTGTCAGGGCTGAGTTCCACTCACATATATCGTCC
TCGGAGAAGAAGCTAGAAGATATCTACCCTGTGCTACGTGCAGCGCAAAA
AAGCTGGATCTTAAATGAGTTCATGAAAGAGGCACTGAAGCGCGACAAGA
AGTCCACCGCCGAAGCCGCGAAGAAGAAAACGGCCAAAGAGAAGGAGAAG
AACGTCTTCAATGCAAGCACTTCAAGATTGCGTACTAAATCAGGGTTGCA
ACAAGTGTTGGAAAAGATGACAGTTGTTATACGTGGTGCAGGTTATGTCA
CTCCGACAGAGAAAGACTGTAATCCTGTCATGGTAGAGGTAACGGATGAG
ATTCGTGCGAATTCTAGTGCTCCCCAACCGGTCATGTGCGTTGCGGATGA
CGAGAGTTCCCACCGCCAGACTTTATGA
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protein sequence of Ggra8587.t1

>Ggra8587.t1 ID=Ggra8587.t1|Name=Ggra8587.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MHKCDLEEFDLFLTLSSAIGLARNDMIGTVLHHVTADSDITLVVQMIVSN
RVSDCDEFQSGVRASKDRAVVKGLAVQFNPSEARVVFNRLYQTRISKSTD
SFDSNYPVYLELANMIKKDIWKCLHKELNLMRGARRYKSVRAEFHSHISS
SEKKLEDIYPVLRAAQKSWILNEFMKEALKRDKKSTAEAAKKKTAKEKEK
NVFNASTSRLRTKSGLQQVLEKMTVVIRGAGYVTPTEKDCNPVMVEVTDE
IRANSSAPQPVMCVADDESSHRQTL*
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mRNA from alignment at tig00000116_pilon:273090..274022+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8587.t1 ID=Ggra8587.t1|Name=Ggra8587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000116_pilon:273090..274022+ (Gracilaria gracilis GNS1m male)
ATGCATAAGTGCGATTTGGAAGAATTTGATTTATTTCTGACTCTTTCTTC
GGCTATCGGCTTAGCCAGGAACGATATGATTGGTACGGTTTTGCATCACG
TTACGGCTGACAGCGATATCACTCTGGTAGTACAGATGATCGTGTCGAAT
CGAGTATCGGATTGTGATGAATTCCAGTCTGGTGTACGTGCTTCAAAAGA
CAGAGCGGTAGTAAAGGGACTGGCAGTGCAGTTTAATCCTTCAGAGGGTT
AAATTATTCTGCGGAACTCCGTTCGTGTACCAACGGCATTGGATAGGAGG
ATGATGAAAGCAAACGACATGCCTGGTTTTCCGACTGGTACTGTTATCTC
AGCTCGAGTTGTATTCAATCGCCTGTATCAAACCCGAATAAGCAAAAGCA
CAGATTCGTTCGACTCAAACTATCCCGTGTACTTAGAGCTTGCGAATATG
ATCAAGAAAGATATCTGGAAGTGTCTTCATAAGGAGCTAAACTTAATGCG
AGGGGCCCGCAGATACAAGTCTGTCAGGGCTGAGTTCCACTCACATATAT
CGTCCTCGGAGAAGAAGCTAGAAGATATCTACCCTGTGCTACGTGCAGCG
CAAAAAAGCTGGATCTTAAATGAGTTCATGAAAGAGGCACTGAAGCGCGA
CAAGAAGTCCACCGCCGAAGCCGCGAAGAAGAAAACGGCCAAAGAGAAGG
AGAAGAACGTCTTCAATGCAAGCACTTCAAGATTGCGTACTAAATCAGGG
TTGCAACAAGTGTTGGAAAAGATGACAGTTGTTATACGTGGTGCAGGTTA
TGTCACTCCGACAGAGAAAGACTGTAATCCTGTCATGGTAGAGGTAACGG
ATGAGATTCGTGCGAATTCTAGTGCTCCCCAACCGGTCATGTGCGTTGCG
GATGACGAGAGTTCCCACCGCCAGACTTTATGA
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Coding sequence (CDS) from alignment at tig00000116_pilon:273090..274022+

>Ggra8587.t1 ID=Ggra8587.t1|Name=Ggra8587.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000116_pilon:273090..274022+ (Gracilaria gracilis GNS1m male)
ATGCATAAGTGCGATTTGGAAGAATTTGATTTATTTCTGACTCTTTCTTC
GGCTATCGGCTTAGCCAGGAACGATATGATTGGTACGGTTTTGCATCACG
TTACGGCTGACAGCGATATCACTCTGGTAGTACAGATGATCGTGTCGAAT
CGAGTATCGGATTGTGATGAATTCCAGTCTGGTGTACGTGCTTCAAAAGA
CAGAGCGGTAGTAAAGGGACTGGCAGTGCAGTTTAATCCTTCAGAGGCTC
GAGTTGTATTCAATCGCCTGTATCAAACCCGAATAAGCAAAAGCACAGAT
TCGTTCGACTCAAACTATCCCGTGTACTTAGAGCTTGCGAATATGATCAA
GAAAGATATCTGGAAGTGTCTTCATAAGGAGCTAAACTTAATGCGAGGGG
CCCGCAGATACAAGTCTGTCAGGGCTGAGTTCCACTCACATATATCGTCC
TCGGAGAAGAAGCTAGAAGATATCTACCCTGTGCTACGTGCAGCGCAAAA
AAGCTGGATCTTAAATGAGTTCATGAAAGAGGCACTGAAGCGCGACAAGA
AGTCCACCGCCGAAGCCGCGAAGAAGAAAACGGCCAAAGAGAAGGAGAAG
AACGTCTTCAATGCAAGCACTTCAAGATTGCGTACTAAATCAGGGTTGCA
ACAAGTGTTGGAAAAGATGACAGTTGTTATACGTGGTGCAGGTTATGTCA
CTCCGACAGAGAAAGACTGTAATCCTGTCATGGTAGAGGTAACGGATGAG
ATTCGTGCGAATTCTAGTGCTCCCCAACCGGTCATGTGCGTTGCGGATGA
CGAGAGTTCCCACCGCCAGACTTTATGA
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