Ggra8556.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8556.t1
Unique NameGgra8556.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:173937..174512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5888.CAK74861
PFAMsApbA,Octopine_DH
Max annot lvl2759|Eukaryota
Evalue3.05e-22
EggNOG OGs2948S@1|root,2RB5S@2759|Eukaryota,3ZDS1@5878|Ciliophora
DescriptionNAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8556Ggra8556Gracilaria gracilis GNS1m malegenetig00000191_pilon 173937..174512 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8556.t1.stop1Ggra8556.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 173937..173939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8556.t1.CDS1Ggra8556.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 173937..174512 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8556.t1.exon1Ggra8556.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 173937..174512 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8556.t1.start1Ggra8556.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 174510..174512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8556.t1Ggra8556.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 173937..174512 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8556.t1 ID=Ggra8556.t1|Name=Ggra8556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=192bp
MHGLFSKRTEINRVPLFYEEMDDFSANLIHEVSEETLAIARAVEKKSAEM
GQPMNLSSVLSIEDSTMKVYEVRDKSSLKRIFQTCAGFEGIATPLKKGQV
KDGVQMYEVDWKCRYFTEDVPALCVLRGLAQILGVKTSTIDMLIKWAQKN
MDGAYEFITEDNKLNTDRKKLMYTPQYWGISDAEKLVRFHA*
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spliced messenger RNA

>Ggra8556.t1 ID=Ggra8556.t1|Name=Ggra8556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000191_pilon:173937..174512- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGGCTTGTTCTCAAAACGTACAGAGATTAATCGCGTCCCTCTGTT
CTACGAGGAAATGGATGACTTTTCAGCCAATCTGATTCATGAAGTATCGG
AAGAGACGCTGGCCATCGCACGTGCCGTCGAGAAGAAGTCAGCAGAGATG
GGACAGCCGATGAACCTGTCTTCGGTGTTATCCATCGAGGACTCGACGAT
GAAGGTGTACGAAGTGAGAGATAAGTCTTCTCTAAAGAGAATCTTCCAGA
CCTGTGCTGGATTCGAAGGTATAGCAACTCCTCTGAAGAAGGGACAGGTC
AAGGATGGTGTGCAGATGTATGAAGTGGACTGGAAATGCCGTTACTTCAC
TGAGGACGTTCCGGCTCTGTGTGTGTTGCGGGGGTTGGCACAAATACTGG
GGGTGAAGACTAGCACGATTGACATGTTGATCAAGTGGGCGCAGAAGAAC
ATGGATGGCGCATACGAGTTCATCACCGAGGACAATAAGCTTAATACTGA
TCGCAAGAAGCTGATGTACACGCCACAGTATTGGGGCATTTCGGATGCTG
AGAAGCTTGTGCGCTTCCATGCCTAA
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protein sequence of Ggra8556.t1

>Ggra8556.t1 ID=Ggra8556.t1|Name=Ggra8556.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MHGLFSKRTEINRVPLFYEEMDDFSANLIHEVSEETLAIARAVEKKSAEM
GQPMNLSSVLSIEDSTMKVYEVRDKSSLKRIFQTCAGFEGIATPLKKGQV
KDGVQMYEVDWKCRYFTEDVPALCVLRGLAQILGVKTSTIDMLIKWAQKN
MDGAYEFITEDNKLNTDRKKLMYTPQYWGISDAEKLVRFHA*
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mRNA from alignment at tig00000191_pilon:173937..174512-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8556.t1 ID=Ggra8556.t1|Name=Ggra8556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000191_pilon:173937..174512- (Gracilaria gracilis GNS1m male)
ATGCATGGCTTGTTCTCAAAACGTACAGAGATTAATCGCGTCCCTCTGTT
CTACGAGGAAATGGATGACTTTTCAGCCAATCTGATTCATGAAGTATCGG
AAGAGACGCTGGCCATCGCACGTGCCGTCGAGAAGAAGTCAGCAGAGATG
GGACAGCCGATGAACCTGTCTTCGGTGTTATCCATCGAGGACTCGACGAT
GAAGGTGTACGAAGTGAGAGATAAGTCTTCTCTAAAGAGAATCTTCCAGA
CCTGTGCTGGATTCGAAGGTATAGCAACTCCTCTGAAGAAGGGACAGGTC
AAGGATGGTGTGCAGATGTATGAAGTGGACTGGAAATGCCGTTACTTCAC
TGAGGACGTTCCGGCTCTGTGTGTGTTGCGGGGGTTGGCACAAATACTGG
GGGTGAAGACTAGCACGATTGACATGTTGATCAAGTGGGCGCAGAAGAAC
ATGGATGGCGCATACGAGTTCATCACCGAGGACAATAAGCTTAATACTGA
TCGCAAGAAGCTGATGTACACGCCACAGTATTGGGGCATTTCGGATGCTG
AGAAGCTTGTGCGCTTCCATGCCTAA
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Coding sequence (CDS) from alignment at tig00000191_pilon:173937..174512-

>Ggra8556.t1 ID=Ggra8556.t1|Name=Ggra8556.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00000191_pilon:173937..174512- (Gracilaria gracilis GNS1m male)
ATGCATGGCTTGTTCTCAAAACGTACAGAGATTAATCGCGTCCCTCTGTT
CTACGAGGAAATGGATGACTTTTCAGCCAATCTGATTCATGAAGTATCGG
AAGAGACGCTGGCCATCGCACGTGCCGTCGAGAAGAAGTCAGCAGAGATG
GGACAGCCGATGAACCTGTCTTCGGTGTTATCCATCGAGGACTCGACGAT
GAAGGTGTACGAAGTGAGAGATAAGTCTTCTCTAAAGAGAATCTTCCAGA
CCTGTGCTGGATTCGAAGGTATAGCAACTCCTCTGAAGAAGGGACAGGTC
AAGGATGGTGTGCAGATGTATGAAGTGGACTGGAAATGCCGTTACTTCAC
TGAGGACGTTCCGGCTCTGTGTGTGTTGCGGGGGTTGGCACAAATACTGG
GGGTGAAGACTAGCACGATTGACATGTTGATCAAGTGGGCGCAGAAGAAC
ATGGATGGCGCATACGAGTTCATCACCGAGGACAATAAGCTTAATACTGA
TCGCAAGAAGCTGATGTACACGCCACAGTATTGGGGCATTTCGGATGCTG
AGAAGCTTGTGCGCTTCCATGCCTAA
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