Ggra8551.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8551.t1
Unique NameGgra8551.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:163345..164622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706361.1
Preferred nameCMK
PFAMsGHMP_kinases_C,GHMP_kinases_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC01439
KEGG koko:K00919
KEGG ReactionR05634
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009509,GO:0009536,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050515
Evalue6.62e-95
EggNOG OGsCOG1947@1|root,2QT9C@2759|Eukaryota
EC2.7.1.148
Description4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8551Ggra8551Gracilaria gracilis GNS1m malegenetig00000191_pilon 163345..164622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8551.t1Ggra8551.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 163345..164622 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8551.t1.stop1Ggra8551.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 163345..163347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8551.t1.CDS1Ggra8551.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 163345..163524 -
Ggra8551.t1.CDS2Ggra8551.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000191_pilon 163650..164308 -
Ggra8551.t1.CDS3Ggra8551.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000191_pilon 164406..164622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8551.t1.exon1Ggra8551.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 163345..163524 -
Ggra8551.t1.exon2Ggra8551.t1.exon2Gracilaria gracilis GNS1m maleexontig00000191_pilon 163650..164308 -
Ggra8551.t1.exon3Ggra8551.t1.exon3Gracilaria gracilis GNS1m maleexontig00000191_pilon 164406..164622 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8551.t1.intron1Ggra8551.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000191_pilon 163525..163649 -
Ggra8551.t1.intron2Ggra8551.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000191_pilon 164309..164405 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8551.t1.start1Ggra8551.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 164620..164622 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8551.t1 ID=Ggra8551.t1|Name=Ggra8551.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MHPCFVSAFANKPLLQRTHNAQSKRCRLRSLMTASKSLPDEKSVVSPDEW
DLRLGSPSKINLFLRIVGKRPDGFHELASLFQSISLHDTLYFSVKAENDA
NPEQDSLECDKSEIPTDSSNLVLRAISKFREKTGIEKYFRVRLEKRVPHE
AGLGGGSANAATALWAVNQLCGKPCTADELAEFGAEFGSDISFFLSEGTA
YCTGRGEVMEKVPRLPPQSLYIVKPAEGLSTAEVFKNLDLSECSDKDPRE
LLRKMEKGVIFADFVNDLEIPSFRLMPKLKKLKEDLYKAGFNVVLMSGSG
TSFFCLGQPWSKDFMEVFPAEYNVQVFKCFFHGRRYADMWYFEQPPLTPK
K*
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spliced messenger RNA

>Ggra8551.t1 ID=Ggra8551.t1|Name=Ggra8551.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000191_pilon:163345..164622- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCTTGCTTTGTCTCTGCATTTGCCAACAAACCGCTTCTACAACG
AACACACAATGCGCAATCGAAAAGATGCCGCCTGCGATCTTTGATGACGG
CATCAAAATCACTTCCGGACGAGAAATCTGTGGTGTCCCCAGACGAATGG
GACCTGAGATTGGGAAGCCCATCCAAGATAAACCTCTTTCTTCGCATCGT
TGGAAAACGCCCAGACGGTTTCCACGAGCTTGCCTCTCTGTTCCAGTCGA
TAAGCCTGCACGACACATTGTATTTCTCAGTCAAGGCTGAGAACGACGCC
AATCCGGAACAGGATTCTTTAGAATGCGACAAGTCGGAAATACCAACAGA
CTCTTCAAACTTGGTGCTGCGTGCGATCAGCAAGTTTCGCGAGAAAACGG
GCATCGAAAAGTACTTTCGCGTGCGCCTCGAAAAGCGCGTCCCACATGAA
GCCGGTCTAGGCGGCGGTTCCGCAAACGCCGCCACCGCGCTGTGGGCCGT
CAATCAACTGTGCGGTAAACCATGTACCGCCGACGAGCTGGCCGAATTCG
GAGCAGAATTCGGATCTGACATATCGTTCTTTCTATCGGAGGGAACTGCG
TACTGCACCGGTCGTGGCGAGGTGATGGAAAAGGTTCCGCGATTACCTCC
TCAGTCGTTGTACATTGTGAAGCCGGCAGAGGGATTGTCGACAGCGGAGG
TGTTTAAGAATCTTGACTTGTCAGAGTGCTCCGACAAGGACCCGCGCGAA
TTGCTGCGCAAGATGGAGAAAGGGGTGATCTTTGCTGATTTTGTGAATGA
CCTAGAGATTCCTAGTTTCCGACTGATGCCGAAGTTGAAGAAGTTAAAAG
AAGACTTGTACAAAGCGGGCTTTAACGTTGTGTTGATGAGCGGAAGCGGC
ACGTCATTCTTCTGCCTCGGACAACCTTGGAGTAAGGACTTTATGGAAGT
GTTCCCGGCTGAGTATAATGTACAGGTGTTCAAATGCTTCTTCCACGGAA
GACGATACGCAGATATGTGGTACTTTGAACAGCCTCCGCTCACTCCAAAG
AAATGA
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protein sequence of Ggra8551.t1

>Ggra8551.t1 ID=Ggra8551.t1|Name=Ggra8551.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MHPCFVSAFANKPLLQRTHNAQSKRCRLRSLMTASKSLPDEKSVVSPDEW
DLRLGSPSKINLFLRIVGKRPDGFHELASLFQSISLHDTLYFSVKAENDA
NPEQDSLECDKSEIPTDSSNLVLRAISKFREKTGIEKYFRVRLEKRVPHE
AGLGGGSANAATALWAVNQLCGKPCTADELAEFGAEFGSDISFFLSEGTA
YCTGRGEVMEKVPRLPPQSLYIVKPAEGLSTAEVFKNLDLSECSDKDPRE
LLRKMEKGVIFADFVNDLEIPSFRLMPKLKKLKEDLYKAGFNVVLMSGSG
TSFFCLGQPWSKDFMEVFPAEYNVQVFKCFFHGRRYADMWYFEQPPLTPK
K*
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mRNA from alignment at tig00000191_pilon:163345..164622-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8551.t1 ID=Ggra8551.t1|Name=Ggra8551.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000191_pilon:163345..164622- (Gracilaria gracilis GNS1m male)
ATGCATCCTTGCTTTGTCTCTGCATTTGCCAACAAACCGCTTCTACAACG
AACACACAATGCGCAATCGAAAAGATGCCGCCTGCGATCTTTGATGACGG
CATCAAAATCACTTCCGGACGAGAAATCTGTGGTGTCCCCAGACGAATGG
GACCTGAGATTGGGAAGCCCATCCAAGATAAACCTCTTTCTTCGCATCGT
TGGAAAACGCCCAGACGGTGAGTAGAGCGGCGCTCCACGAACAACAAATC
TCGGTGACTCCCGATCGGTCTCGCAAATGCGCAAAGCTGCTTTCACTGAC
ATGTCAATCTCCAGGTTTCCACGAGCTTGCCTCTCTGTTCCAGTCGATAA
GCCTGCACGACACATTGTATTTCTCAGTCAAGGCTGAGAACGACGCCAAT
CCGGAACAGGATTCTTTAGAATGCGACAAGTCGGAAATACCAACAGACTC
TTCAAACTTGGTGCTGCGTGCGATCAGCAAGTTTCGCGAGAAAACGGGCA
TCGAAAAGTACTTTCGCGTGCGCCTCGAAAAGCGCGTCCCACATGAAGCC
GGTCTAGGCGGCGGTTCCGCAAACGCCGCCACCGCGCTGTGGGCCGTCAA
TCAACTGTGCGGTAAACCATGTACCGCCGACGAGCTGGCCGAATTCGGAG
CAGAATTCGGATCTGACATATCGTTCTTTCTATCGGAGGGAACTGCGTAC
TGCACCGGTCGTGGCGAGGTGATGGAAAAGGTTCCGCGATTACCTCCTCA
GTCGTTGTACATTGTGAAGCCGGCAGAGGGATTGTCGACAGCGGAGGTGT
TTAAGAATCTTGACTTGTCAGAGTGCTCCGACAAGGACCCGCGCGAATTG
CTGCGCAAGATGGAGAAAGGGGTGATCTTTGCTGATTTTGTGAATGACCT
AGAGATTCCTAGTTTCCGACTGATGCCGAAGTTGAAGAAGTTAAAAGAAG
ACTTGTACAAAGCGGGCTTTAACGTAAGTTGCACAGCTACAAGGCGCCTT
TTACATATTCAGTGACCGAAGAGCATATCAAGACCGAAGGTGTACTAACA
GGATTGGACCGACTGCTCTCTTATGGCCGGTATTATAAAACAATGCAGGT
TGTGTTGATGAGCGGAAGCGGCACGTCATTCTTCTGCCTCGGACAACCTT
GGAGTAAGGACTTTATGGAAGTGTTCCCGGCTGAGTATAATGTACAGGTG
TTCAAATGCTTCTTCCACGGAAGACGATACGCAGATATGTGGTACTTTGA
ACAGCCTCCGCTCACTCCAAAGAAATGA
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Coding sequence (CDS) from alignment at tig00000191_pilon:163345..164622-

>Ggra8551.t1 ID=Ggra8551.t1|Name=Ggra8551.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000191_pilon:163345..164622- (Gracilaria gracilis GNS1m male)
ATGCATCCTTGCTTTGTCTCTGCATTTGCCAACAAACCGCTTCTACAACG
AACACACAATGCGCAATCGAAAAGATGCCGCCTGCGATCTTTGATGACGG
CATCAAAATCACTTCCGGACGAGAAATCTGTGGTGTCCCCAGACGAATGG
GACCTGAGATTGGGAAGCCCATCCAAGATAAACCTCTTTCTTCGCATCGT
TGGAAAACGCCCAGACGGTTTCCACGAGCTTGCCTCTCTGTTCCAGTCGA
TAAGCCTGCACGACACATTGTATTTCTCAGTCAAGGCTGAGAACGACGCC
AATCCGGAACAGGATTCTTTAGAATGCGACAAGTCGGAAATACCAACAGA
CTCTTCAAACTTGGTGCTGCGTGCGATCAGCAAGTTTCGCGAGAAAACGG
GCATCGAAAAGTACTTTCGCGTGCGCCTCGAAAAGCGCGTCCCACATGAA
GCCGGTCTAGGCGGCGGTTCCGCAAACGCCGCCACCGCGCTGTGGGCCGT
CAATCAACTGTGCGGTAAACCATGTACCGCCGACGAGCTGGCCGAATTCG
GAGCAGAATTCGGATCTGACATATCGTTCTTTCTATCGGAGGGAACTGCG
TACTGCACCGGTCGTGGCGAGGTGATGGAAAAGGTTCCGCGATTACCTCC
TCAGTCGTTGTACATTGTGAAGCCGGCAGAGGGATTGTCGACAGCGGAGG
TGTTTAAGAATCTTGACTTGTCAGAGTGCTCCGACAAGGACCCGCGCGAA
TTGCTGCGCAAGATGGAGAAAGGGGTGATCTTTGCTGATTTTGTGAATGA
CCTAGAGATTCCTAGTTTCCGACTGATGCCGAAGTTGAAGAAGTTAAAAG
AAGACTTGTACAAAGCGGGCTTTAACGTTGTGTTGATGAGCGGAAGCGGC
ACGTCATTCTTCTGCCTCGGACAACCTTGGAGTAAGGACTTTATGGAAGT
GTTCCCGGCTGAGTATAATGTACAGGTGTTCAAATGCTTCTTCCACGGAA
GACGATACGCAGATATGTGGTACTTTGAACAGCCTCCGCTCACTCCAAAG
AAATGA
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