Ggra8550.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8550.t1
Unique NameGgra8550.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length317
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:162221..163264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707824.1
PFAMsAbhydrolase_1,Abhydrolase_6
Max annot lvl2759|Eukaryota
KEGG koko:K13703
Evalue2.92e-62
EggNOG OGsCOG0596@1|root,KOG2382@2759|Eukaryota
Descriptionhydrolase activity, acting on ester bonds
COG categoryC
BRITEko00000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8550Ggra8550Gracilaria gracilis GNS1m malegenetig00000191_pilon 162221..163264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8550.t1Ggra8550.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 162221..163264 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8550.t1.start1Ggra8550.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 162221..162223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8550.t1.CDS1Ggra8550.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 162221..162476 +
Ggra8550.t1.CDS2Ggra8550.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000191_pilon 162570..163264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8550.t1.exon1Ggra8550.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 162221..162476 +
Ggra8550.t1.exon2Ggra8550.t1.exon2Gracilaria gracilis GNS1m maleexontig00000191_pilon 162570..163264 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8550.t1.intron1Ggra8550.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000191_pilon 162477..162569 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8550.t1.stop1Ggra8550.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 163262..163264 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8550.t1 ID=Ggra8550.t1|Name=Ggra8550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=317bp
MRARLVALARATRRRLCTSPPPPHTPVALHSVSVPPRTPPPPPPPAPAPA
RADAPPPPPPPPVVVLHGVLASECTYRSLLNRPDFVPAREKIALDLRNHG
RSPHVCAPHAMTYDAMLADLVHFLHSRRIERATVIGHSMGGKLAMHLALS
HPRLVSQLVVVDVAPVQYRPSNHPSDALNASRAMLSVDLSAVRTRHDVDR
QLLHHGVSSQAVRNFLLTNLAAHNGAQQRYRWKPNLQAIYASMPTIMSFP
PQEGRRFEGPTCVIRGANSNYVPFQAMRAVTSLFPNTKLVTISDAGHWLQ
SQMPDQFCAAVNDFVN*
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spliced messenger RNA

>Ggra8550.t1 ID=Ggra8550.t1|Name=Ggra8550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000191_pilon:162221..163264+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgcgcgcgtctcgtcgcgcttgcgcgcgccacgcgccgccgcctgtg
cacctcgccgccgccgccgcACACGCCCGTCGCGCTGCACTCCGTATCGG
Tgccgccgcgcacgccgccgccgccgccgccgcccgcgcccgcgcccgcc
cgcgccgacgcaccgccgccgccgccgccgccgccCGTCGTGGTGCTACA
CGGCGTGCTGGCGTCCGAGTGCACTTACCGTTCGTTGCTCAACCGGCCCG
ACTTTGTGCCTGCGCGCGAGAAGATCGCGCTCGACCTACGCAATCATGGC
CGCTCGCCGCACGTGTGTGCGCCGCACGCCATGACGTACGACGCCATGCT
GGCCGACCTGGTGCACTTTCTGCACAGCCGTCGCATCGAGCGCGCCACCG
TCATCGGCCACAGCATGGGCGGCAAGCTGGCCATGCACCTCGCGCTGTCG
CACCCGCGTCTGGTGTCGCAGCTCGTGGTGGTGGACGTTGCGCCCGTTCA
ATACCGCCCGTCCAACCACCCTTCCGACGCGCTCAACGCCAGTCGCGCCA
TGCTCAGCGTCGACCTGTCCGCCGTGCGCACGCGCCACGACGTCGATCGC
CAGCTCTTGCACCACGGCGTTTCGTCGCAGGCGGTGCGAAACTTCCTGCT
TACCAACCTTGCCGCGCACAATGGCGCGCAGCAGCGGTACCGCTGGAAGC
CCAATTTGCAAGCTATTTACGCCTCTATGCCTACCATTATGTCCTTCCCG
CCGCAGGAGGGGCGCCGATTCGAGGGGCCTACTTGCGTCATTCGCGGTGC
CAATAGCAACTATGTTCCATTCCAAGCTATGCGCGCTGTCACCTCTCTGT
TTCCCAACACCAAGCTCGTCACTATATCTGATGCTGGACACTGGCTCCAG
TCTCAGATGCCCGATCAATTTTGCGCTGCTGTCAACGACTTTGTCAATTA
A
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protein sequence of Ggra8550.t1

>Ggra8550.t1 ID=Ggra8550.t1|Name=Ggra8550.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=317bp
MRARLVALARATRRRLCTSPPPPHTPVALHSVSVPPRTPPPPPPPAPAPA
RADAPPPPPPPPVVVLHGVLASECTYRSLLNRPDFVPAREKIALDLRNHG
RSPHVCAPHAMTYDAMLADLVHFLHSRRIERATVIGHSMGGKLAMHLALS
HPRLVSQLVVVDVAPVQYRPSNHPSDALNASRAMLSVDLSAVRTRHDVDR
QLLHHGVSSQAVRNFLLTNLAAHNGAQQRYRWKPNLQAIYASMPTIMSFP
PQEGRRFEGPTCVIRGANSNYVPFQAMRAVTSLFPNTKLVTISDAGHWLQ
SQMPDQFCAAVNDFVN*
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mRNA from alignment at tig00000191_pilon:162221..163264+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8550.t1 ID=Ggra8550.t1|Name=Ggra8550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000191_pilon:162221..163264+ (Gracilaria gracilis GNS1m male)
atgcgcgcgcgtctcgtcgcgcttgcgcgcgccacgcgccgccgcctgtg
cacctcgccgccgccgccgcACACGCCCGTCGCGCTGCACTCCGTATCGG
Tgccgccgcgcacgccgccgccgccgccgccgcccgcgcccgcgcccgcc
cgcgccgacgcaccgccgccgccgccgccgccgccCGTCGTGGTGCTACA
CGGCGTGCTGGCGTCCGAGTGCACTTACCGTTCGTTGCTCAACCGGCCCG
ACTTTGGTAAGTTGCGCCGCCGCTAATCTGGCCGCCGCTAATCTGGCCGC
CGCCTTGTGCCAATCGTGCATTATACTGACTGTCGCCGCCGCCTCGCAGT
GCCTGCGCGCGAGAAGATCGCGCTCGACCTACGCAATCATGGCCGCTCGC
CGCACGTGTGTGCGCCGCACGCCATGACGTACGACGCCATGCTGGCCGAC
CTGGTGCACTTTCTGCACAGCCGTCGCATCGAGCGCGCCACCGTCATCGG
CCACAGCATGGGCGGCAAGCTGGCCATGCACCTCGCGCTGTCGCACCCGC
GTCTGGTGTCGCAGCTCGTGGTGGTGGACGTTGCGCCCGTTCAATACCGC
CCGTCCAACCACCCTTCCGACGCGCTCAACGCCAGTCGCGCCATGCTCAG
CGTCGACCTGTCCGCCGTGCGCACGCGCCACGACGTCGATCGCCAGCTCT
TGCACCACGGCGTTTCGTCGCAGGCGGTGCGAAACTTCCTGCTTACCAAC
CTTGCCGCGCACAATGGCGCGCAGCAGCGGTACCGCTGGAAGCCCAATTT
GCAAGCTATTTACGCCTCTATGCCTACCATTATGTCCTTCCCGCCGCAGG
AGGGGCGCCGATTCGAGGGGCCTACTTGCGTCATTCGCGGTGCCAATAGC
AACTATGTTCCATTCCAAGCTATGCGCGCTGTCACCTCTCTGTTTCCCAA
CACCAAGCTCGTCACTATATCTGATGCTGGACACTGGCTCCAGTCTCAGA
TGCCCGATCAATTTTGCGCTGCTGTCAACGACTTTGTCAATTAA
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Coding sequence (CDS) from alignment at tig00000191_pilon:162221..163264+

>Ggra8550.t1 ID=Ggra8550.t1|Name=Ggra8550.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00000191_pilon:162221..163264+ (Gracilaria gracilis GNS1m male)
atgcgcgcgcgtctcgtcgcgcttgcgcgcgccacgcgccgccgcctgtg
cacctcgccgccgccgccgcACACGCCCGTCGCGCTGCACTCCGTATCGG
Tgccgccgcgcacgccgccgccgccgccgccgcccgcgcccgcgcccgcc
cgcgccgacgcaccgccgccgccgccgccgccgccCGTCGTGGTGCTACA
CGGCGTGCTGGCGTCCGAGTGCACTTACCGTTCGTTGCTCAACCGGCCCG
ACTTTGTGCCTGCGCGCGAGAAGATCGCGCTCGACCTACGCAATCATGGC
CGCTCGCCGCACGTGTGTGCGCCGCACGCCATGACGTACGACGCCATGCT
GGCCGACCTGGTGCACTTTCTGCACAGCCGTCGCATCGAGCGCGCCACCG
TCATCGGCCACAGCATGGGCGGCAAGCTGGCCATGCACCTCGCGCTGTCG
CACCCGCGTCTGGTGTCGCAGCTCGTGGTGGTGGACGTTGCGCCCGTTCA
ATACCGCCCGTCCAACCACCCTTCCGACGCGCTCAACGCCAGTCGCGCCA
TGCTCAGCGTCGACCTGTCCGCCGTGCGCACGCGCCACGACGTCGATCGC
CAGCTCTTGCACCACGGCGTTTCGTCGCAGGCGGTGCGAAACTTCCTGCT
TACCAACCTTGCCGCGCACAATGGCGCGCAGCAGCGGTACCGCTGGAAGC
CCAATTTGCAAGCTATTTACGCCTCTATGCCTACCATTATGTCCTTCCCG
CCGCAGGAGGGGCGCCGATTCGAGGGGCCTACTTGCGTCATTCGCGGTGC
CAATAGCAACTATGTTCCATTCCAAGCTATGCGCGCTGTCACCTCTCTGT
TTCCCAACACCAAGCTCGTCACTATATCTGATGCTGGACACTGGCTCCAG
TCTCAGATGCCCGATCAATTTTGCGCTGCTGTCAACGACTTTGTCAATTA
A
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