Ggra855.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra855.t1
Unique NameGgra855.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000178_piloncontigtig00000178_pilon:189782..190186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra855Ggra855Gracilaria gracilis GNS1m malegenetig00000178_pilon 189782..190186 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra855.t1.start1Ggra855.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000178_pilon 189782..189784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra855.t1.CDS1Ggra855.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000178_pilon 189782..190186 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra855.t1.exon1Ggra855.t1.exon1Gracilaria gracilis GNS1m maleexontig00000178_pilon 189782..190186 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra855.t1.stop1Ggra855.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000178_pilon 190184..190186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra855.t1Ggra855.t1Gracilaria gracilis GNS1m malepolypeptidetig00000178_pilon 189782..190186 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra855.t1 ID=Ggra855.t1|Name=Ggra855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=135bp
MNSSSIVFISLLAVALASPTTLPAKPYAVNVTDTPEMVGLCKPDFVEFVI
TPVATCFCNALLNDVISVNSKDVVEDDCLSFFGSKKAILDVDEPCDGFMT
EKRWLNIVLVETLVNVIYKKCFPEFLFMATITKH*
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spliced messenger RNA

>Ggra855.t1 ID=Ggra855.t1|Name=Ggra855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00000178_pilon:189782..190186+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGCTCCAGCATCGTGTTTATTTCCTTGCTAGCCGTCGCTTTGGC
GTCGCCAACCACTCTGCCGGCAAAGCCTTACGCTGTGAACGTGACAGACA
CTCCCGAAATGGTGGGTCTCTGCAAGCCGGACTTTGTGGAATTCGTCATC
ACACCGGTGGCCACATGCTTTTGTAACGCGCTTCTTAACGATGTGATCAG
TGTCAATTCGAAGGATGTGGTGGAAGACGACTGTCTGTCCTTCTTCGGGT
CCAAGAAGGCGATCCTTGACGTGGATGAACCGTGTGACGGATTCATGACT
GAGAAAAGGTGGCTTAATATTGTATTGGTTGAGACACTTGTGAATGTGAT
TTATAAGAAGTGTTTCCCGGAGTTCCTGTTCATGGCCACGATCACCAAGC
ACTAG
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protein sequence of Ggra855.t1

>Ggra855.t1 ID=Ggra855.t1|Name=Ggra855.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=135bp
MNSSSIVFISLLAVALASPTTLPAKPYAVNVTDTPEMVGLCKPDFVEFVI
TPVATCFCNALLNDVISVNSKDVVEDDCLSFFGSKKAILDVDEPCDGFMT
EKRWLNIVLVETLVNVIYKKCFPEFLFMATITKH*
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mRNA from alignment at tig00000178_pilon:189782..190186+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra855.t1 ID=Ggra855.t1|Name=Ggra855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00000178_pilon:189782..190186+ (Gracilaria gracilis GNS1m male)
ATGAACAGCTCCAGCATCGTGTTTATTTCCTTGCTAGCCGTCGCTTTGGC
GTCGCCAACCACTCTGCCGGCAAAGCCTTACGCTGTGAACGTGACAGACA
CTCCCGAAATGGTGGGTCTCTGCAAGCCGGACTTTGTGGAATTCGTCATC
ACACCGGTGGCCACATGCTTTTGTAACGCGCTTCTTAACGATGTGATCAG
TGTCAATTCGAAGGATGTGGTGGAAGACGACTGTCTGTCCTTCTTCGGGT
CCAAGAAGGCGATCCTTGACGTGGATGAACCGTGTGACGGATTCATGACT
GAGAAAAGGTGGCTTAATATTGTATTGGTTGAGACACTTGTGAATGTGAT
TTATAAGAAGTGTTTCCCGGAGTTCCTGTTCATGGCCACGATCACCAAGC
ACTAG
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Coding sequence (CDS) from alignment at tig00000178_pilon:189782..190186+

>Ggra855.t1 ID=Ggra855.t1|Name=Ggra855.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=405bp|location=Sequence derived from alignment at tig00000178_pilon:189782..190186+ (Gracilaria gracilis GNS1m male)
ATGAACAGCTCCAGCATCGTGTTTATTTCCTTGCTAGCCGTCGCTTTGGC
GTCGCCAACCACTCTGCCGGCAAAGCCTTACGCTGTGAACGTGACAGACA
CTCCCGAAATGGTGGGTCTCTGCAAGCCGGACTTTGTGGAATTCGTCATC
ACACCGGTGGCCACATGCTTTTGTAACGCGCTTCTTAACGATGTGATCAG
TGTCAATTCGAAGGATGTGGTGGAAGACGACTGTCTGTCCTTCTTCGGGT
CCAAGAAGGCGATCCTTGACGTGGATGAACCGTGTGACGGATTCATGACT
GAGAAAAGGTGGCTTAATATTGTATTGGTTGAGACACTTGTGAATGTGAT
TTATAAGAAGTGTTTCCCGGAGTTCCTGTTCATGGCCACGATCACCAAGC
ACTAG
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