Ggra8539.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8539.t1
Unique NameGgra8539.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length565
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:128979..130673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog176946.XP_007426452.1
Preferred nameBYSL
PFAMsBystin
Max annot lvl33208|Metazoa
KEGG koko:K14797
GOsGO:0000003,GO:0000462,GO:0001701,GO:0001824,GO:0001825,GO:0001829,GO:0002237,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007155,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007565,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010033,GO:0010467,GO:0014070,GO:0015630,GO:0016070,GO:0016072,GO:0022414,GO:0022610,GO:0022613,GO:0030154,GO:0030490,GO:0031974,GO:0031981,GO:0032496,GO:0032501,GO:0032502,GO:0033993,GO:0034097,GO:0034470,GO:0034641,GO:0034660,GO:0042221,GO:0042254,GO:0042274,GO:0042995,GO:0043009,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045177,GO:0046483,GO:0048471,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0060322,GO:0070013,GO:0070555,GO:0070848,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071347,GO:0071363,GO:0071396,GO:0071407,GO:0071704,GO:0071840,GO:0090304,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901360,GO:1901700,GO:1901701
Evalue1.79e-94
EggNOG OGsKOG3871@1|root,KOG3871@2759|Eukaryota,38DBE@33154|Opisthokonta,3BA8S@33208|Metazoa,3CR6R@33213|Bilateria,4838Q@7711|Chordata,49630@7742|Vertebrata
DescriptionBystin-like
COG categoryW
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8539Ggra8539Gracilaria gracilis GNS1m malegenetig00000191_pilon 128979..130673 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8539.t1.stop1Ggra8539.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 128979..128981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8539.t1.CDS1Ggra8539.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 128979..130673 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8539.t1.exon1Ggra8539.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 128979..130673 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8539.t1.start1Ggra8539.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 130671..130673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8539.t1Ggra8539.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 128979..130673 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8539.t1 ID=Ggra8539.t1|Name=Ggra8539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=565bp
MGKKRARPISSFHNIEGPRENAPLHSQSFVDEVRETRDVEFASEKRQAER
SKRRKRMAEKELSEIKRKSKALDKAAKSSSGAAAKSIDARRAGLEMWKQA
ALRRNQAKSGRDAADKDIDALNGEDGTQDKLPTDSKASAKILKEAKLQRQ
EIRKENLATVADEAAKKNAALEVQLRGVGEKDKPQATGFEESDSEAEDDR
KSYVGTEVRFDDGEEDERELEFLDASKITEDEELALAYFTGMSKQTGASS
DQEQASEPTGSRIMLADIILAKIREKEEADAHAAEIAANPEKAERDRKIA
EVYGLVGNIMSKYRSGKIPKAFKVIPKQRNWEELLYLTRPDEWSAAAVFV
ATRLLASNLSAKQVIPFYRDILLPRCLEDISEHKKLNYHLYRALEKAVFK
PDAFCKGILFPLCEDRSCTLRQATIIGSVVKKVSIPMLHSAATMLYLTQL
SYSPQVSLIMMALLEKKYALPYRVLDSIVGSFLRMKKDTRTLPVLWHKGL
LSFAQTYKMELTMDQKENLKVLMRTHTHYAVTPEIRRELFSSRNRGDSMD
PDANTIAKKIALAV*
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spliced messenger RNA

>Ggra8539.t1 ID=Ggra8539.t1|Name=Ggra8539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000191_pilon:128979..130673- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAGAAGAGAGCGAGGCCGATTTCAAGCTTTCATAATATAGAGGG
ACCGAGAGAGAATGCGCCACTCCATTCGCAGAGTTTTGTGGACGAAGTTC
GTGAAACGAGAGATGTCGAATTTGCTTCTGAAAAGCGACAGGCAGAACGT
TCGAAGAGAAGGAAGAGGATGGCTGAAAAAGAGCTTTCGGAAATAAAACG
CAAGTCTAAAGCACTTGACAAAGCTGCGAAATCGAGTAGTGGTGCCGCGG
CCAAGAGTATCGATGCCAGACGAGCGGGGCTTGAAATGTGGAAACAAGCT
GCGTTGAGAAGAAACCAGGCCAAATCTGGTAGAGATGCGGCTGATAAGGA
TATTGATGCGTTGAACGGGGAAGATGGAACGCAAGATAAGCTTCCCACCG
ATTCAAAGGCTTCTGCCAAGATTTTGAAGGAAGCCAAGCTACAACGACAA
GAGATCCGAAAAGAGAACCTTGCTACTGTCGCCGATGAAGCTGCTAAGAA
AAACGCCGCTTTAGAAGTTCAGCTACGGGGCGTGGGTGAGAAAGATAAGC
CGCAGGCAACTGGTTTTGAAGAAAGCGATTCTGAAGCCGAAGATGATAGG
AAGAGCTACGTTGGGACCGAAGTTCGTTTCGATGATGGGGAAGAGGACGA
AAGAGAGCTTGAGTTTCTGGACGCAAGCAAAATCACCGAGGATGAAGAAC
TGGCTCTTGCCTACTTCACGGGTATGTCAAAGCAGACAGGAGCATCCTCA
GATCAAGAACAGGCCTCTGAGCCAACCGGTTCGCGCATAATGCTCGCGGA
CATTATTCTAGCCAAGATCAGGGAGAAAGAAGAAGCAGATGCACATGCTG
CCGAAATCGCTGCCAACCCGGAAAAGGCGGAGAGAGATCGAAAGATTGCC
GAGGTGTATGGCTTGGTTGGAAATATTATGTCCAAGTATAGAAGTGGAAA
GATTCCCAAGGCATTCAAAGTTATTCCAAAACAAAGGAACTGGGAGGAGC
TTTTGTATCTTACCAGGCCGGATGAATGGTCTGCAGCGGCCGTGTTTGTC
GCCACACGGCTTTTAGCGTCCAATCTGTCTGCAAAGCAGGTGATCCCATT
CTACCGAGATATTCTACTACCAAGGTGCCTGGAGGACATAAGCGAGCATA
AGAAACTGAATTATCATTTGTATCGCGCACTTGAAAAGGCAGTTTTCAAG
CCAGATGCGTTCTGTAAGGGGATCTTGTTTCCCTTGTGCGAGGATCGCAG
TTGTACATTGAGACAAGCTACAATAATCGGCTCCGTTGTGAAGAAGGTAT
CAATTCCAATGTTGCATTCCGCCGCGACGATGTTGTATTTGACACAATTG
TCCTACAGCCCACAAGTATCTCTGATCATGATGGCGCTGTTGGAGAAGAA
GTACGCATTACCATACAGAGTTCTTGACTCCATTGTGGGCAGCTTCCTAA
GGATGAAAAAGGACACACGTACCCTTCCAGTATTGTGGCACAAAGGGCTC
TTGTCGTTTGCCCAAACGTACAAAATGGAGCTGACCATGGACCAGAAAGA
AAATCTCAAAGTATTGATGAGGACTCACACGCATTATGCGGTAACTCCGG
AAATCCGAAGGGAGTTGTTTTCTTCGAGAAATCGTGGGGATAGTATGGAT
CCCGATGCCAACACGATTGCAAAGAAGATAGCGTTAGCCGTGTAG
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protein sequence of Ggra8539.t1

>Ggra8539.t1 ID=Ggra8539.t1|Name=Ggra8539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=565bp
MGKKRARPISSFHNIEGPRENAPLHSQSFVDEVRETRDVEFASEKRQAER
SKRRKRMAEKELSEIKRKSKALDKAAKSSSGAAAKSIDARRAGLEMWKQA
ALRRNQAKSGRDAADKDIDALNGEDGTQDKLPTDSKASAKILKEAKLQRQ
EIRKENLATVADEAAKKNAALEVQLRGVGEKDKPQATGFEESDSEAEDDR
KSYVGTEVRFDDGEEDERELEFLDASKITEDEELALAYFTGMSKQTGASS
DQEQASEPTGSRIMLADIILAKIREKEEADAHAAEIAANPEKAERDRKIA
EVYGLVGNIMSKYRSGKIPKAFKVIPKQRNWEELLYLTRPDEWSAAAVFV
ATRLLASNLSAKQVIPFYRDILLPRCLEDISEHKKLNYHLYRALEKAVFK
PDAFCKGILFPLCEDRSCTLRQATIIGSVVKKVSIPMLHSAATMLYLTQL
SYSPQVSLIMMALLEKKYALPYRVLDSIVGSFLRMKKDTRTLPVLWHKGL
LSFAQTYKMELTMDQKENLKVLMRTHTHYAVTPEIRRELFSSRNRGDSMD
PDANTIAKKIALAV*
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mRNA from alignment at tig00000191_pilon:128979..130673-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8539.t1 ID=Ggra8539.t1|Name=Ggra8539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000191_pilon:128979..130673- (Gracilaria gracilis GNS1m male)
ATGGGTAAGAAGAGAGCGAGGCCGATTTCAAGCTTTCATAATATAGAGGG
ACCGAGAGAGAATGCGCCACTCCATTCGCAGAGTTTTGTGGACGAAGTTC
GTGAAACGAGAGATGTCGAATTTGCTTCTGAAAAGCGACAGGCAGAACGT
TCGAAGAGAAGGAAGAGGATGGCTGAAAAAGAGCTTTCGGAAATAAAACG
CAAGTCTAAAGCACTTGACAAAGCTGCGAAATCGAGTAGTGGTGCCGCGG
CCAAGAGTATCGATGCCAGACGAGCGGGGCTTGAAATGTGGAAACAAGCT
GCGTTGAGAAGAAACCAGGCCAAATCTGGTAGAGATGCGGCTGATAAGGA
TATTGATGCGTTGAACGGGGAAGATGGAACGCAAGATAAGCTTCCCACCG
ATTCAAAGGCTTCTGCCAAGATTTTGAAGGAAGCCAAGCTACAACGACAA
GAGATCCGAAAAGAGAACCTTGCTACTGTCGCCGATGAAGCTGCTAAGAA
AAACGCCGCTTTAGAAGTTCAGCTACGGGGCGTGGGTGAGAAAGATAAGC
CGCAGGCAACTGGTTTTGAAGAAAGCGATTCTGAAGCCGAAGATGATAGG
AAGAGCTACGTTGGGACCGAAGTTCGTTTCGATGATGGGGAAGAGGACGA
AAGAGAGCTTGAGTTTCTGGACGCAAGCAAAATCACCGAGGATGAAGAAC
TGGCTCTTGCCTACTTCACGGGTATGTCAAAGCAGACAGGAGCATCCTCA
GATCAAGAACAGGCCTCTGAGCCAACCGGTTCGCGCATAATGCTCGCGGA
CATTATTCTAGCCAAGATCAGGGAGAAAGAAGAAGCAGATGCACATGCTG
CCGAAATCGCTGCCAACCCGGAAAAGGCGGAGAGAGATCGAAAGATTGCC
GAGGTGTATGGCTTGGTTGGAAATATTATGTCCAAGTATAGAAGTGGAAA
GATTCCCAAGGCATTCAAAGTTATTCCAAAACAAAGGAACTGGGAGGAGC
TTTTGTATCTTACCAGGCCGGATGAATGGTCTGCAGCGGCCGTGTTTGTC
GCCACACGGCTTTTAGCGTCCAATCTGTCTGCAAAGCAGGTGATCCCATT
CTACCGAGATATTCTACTACCAAGGTGCCTGGAGGACATAAGCGAGCATA
AGAAACTGAATTATCATTTGTATCGCGCACTTGAAAAGGCAGTTTTCAAG
CCAGATGCGTTCTGTAAGGGGATCTTGTTTCCCTTGTGCGAGGATCGCAG
TTGTACATTGAGACAAGCTACAATAATCGGCTCCGTTGTGAAGAAGGTAT
CAATTCCAATGTTGCATTCCGCCGCGACGATGTTGTATTTGACACAATTG
TCCTACAGCCCACAAGTATCTCTGATCATGATGGCGCTGTTGGAGAAGAA
GTACGCATTACCATACAGAGTTCTTGACTCCATTGTGGGCAGCTTCCTAA
GGATGAAAAAGGACACACGTACCCTTCCAGTATTGTGGCACAAAGGGCTC
TTGTCGTTTGCCCAAACGTACAAAATGGAGCTGACCATGGACCAGAAAGA
AAATCTCAAAGTATTGATGAGGACTCACACGCATTATGCGGTAACTCCGG
AAATCCGAAGGGAGTTGTTTTCTTCGAGAAATCGTGGGGATAGTATGGAT
CCCGATGCCAACACGATTGCAAAGAAGATAGCGTTAGCCGTGTAG
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Coding sequence (CDS) from alignment at tig00000191_pilon:128979..130673-

>Ggra8539.t1 ID=Ggra8539.t1|Name=Ggra8539.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1695bp|location=Sequence derived from alignment at tig00000191_pilon:128979..130673- (Gracilaria gracilis GNS1m male)
ATGGGTAAGAAGAGAGCGAGGCCGATTTCAAGCTTTCATAATATAGAGGG
ACCGAGAGAGAATGCGCCACTCCATTCGCAGAGTTTTGTGGACGAAGTTC
GTGAAACGAGAGATGTCGAATTTGCTTCTGAAAAGCGACAGGCAGAACGT
TCGAAGAGAAGGAAGAGGATGGCTGAAAAAGAGCTTTCGGAAATAAAACG
CAAGTCTAAAGCACTTGACAAAGCTGCGAAATCGAGTAGTGGTGCCGCGG
CCAAGAGTATCGATGCCAGACGAGCGGGGCTTGAAATGTGGAAACAAGCT
GCGTTGAGAAGAAACCAGGCCAAATCTGGTAGAGATGCGGCTGATAAGGA
TATTGATGCGTTGAACGGGGAAGATGGAACGCAAGATAAGCTTCCCACCG
ATTCAAAGGCTTCTGCCAAGATTTTGAAGGAAGCCAAGCTACAACGACAA
GAGATCCGAAAAGAGAACCTTGCTACTGTCGCCGATGAAGCTGCTAAGAA
AAACGCCGCTTTAGAAGTTCAGCTACGGGGCGTGGGTGAGAAAGATAAGC
CGCAGGCAACTGGTTTTGAAGAAAGCGATTCTGAAGCCGAAGATGATAGG
AAGAGCTACGTTGGGACCGAAGTTCGTTTCGATGATGGGGAAGAGGACGA
AAGAGAGCTTGAGTTTCTGGACGCAAGCAAAATCACCGAGGATGAAGAAC
TGGCTCTTGCCTACTTCACGGGTATGTCAAAGCAGACAGGAGCATCCTCA
GATCAAGAACAGGCCTCTGAGCCAACCGGTTCGCGCATAATGCTCGCGGA
CATTATTCTAGCCAAGATCAGGGAGAAAGAAGAAGCAGATGCACATGCTG
CCGAAATCGCTGCCAACCCGGAAAAGGCGGAGAGAGATCGAAAGATTGCC
GAGGTGTATGGCTTGGTTGGAAATATTATGTCCAAGTATAGAAGTGGAAA
GATTCCCAAGGCATTCAAAGTTATTCCAAAACAAAGGAACTGGGAGGAGC
TTTTGTATCTTACCAGGCCGGATGAATGGTCTGCAGCGGCCGTGTTTGTC
GCCACACGGCTTTTAGCGTCCAATCTGTCTGCAAAGCAGGTGATCCCATT
CTACCGAGATATTCTACTACCAAGGTGCCTGGAGGACATAAGCGAGCATA
AGAAACTGAATTATCATTTGTATCGCGCACTTGAAAAGGCAGTTTTCAAG
CCAGATGCGTTCTGTAAGGGGATCTTGTTTCCCTTGTGCGAGGATCGCAG
TTGTACATTGAGACAAGCTACAATAATCGGCTCCGTTGTGAAGAAGGTAT
CAATTCCAATGTTGCATTCCGCCGCGACGATGTTGTATTTGACACAATTG
TCCTACAGCCCACAAGTATCTCTGATCATGATGGCGCTGTTGGAGAAGAA
GTACGCATTACCATACAGAGTTCTTGACTCCATTGTGGGCAGCTTCCTAA
GGATGAAAAAGGACACACGTACCCTTCCAGTATTGTGGCACAAAGGGCTC
TTGTCGTTTGCCCAAACGTACAAAATGGAGCTGACCATGGACCAGAAAGA
AAATCTCAAAGTATTGATGAGGACTCACACGCATTATGCGGTAACTCCGG
AAATCCGAAGGGAGTTGTTTTCTTCGAGAAATCGTGGGGATAGTATGGAT
CCCGATGCCAACACGATTGCAAAGAAGATAGCGTTAGCCGTGTAG
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