Ggra8498.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8498.t1
Unique NameGgra8498.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:890845..892757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705292.1
Preferred namePID2
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K12873
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000003,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008289,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009888,GO:0009908,GO:0009914,GO:0009925,GO:0009926,GO:0009932,GO:0009958,GO:0009986,GO:0009987,GO:0010015,GO:0010033,GO:0010053,GO:0010054,GO:0010154,GO:0010540,GO:0010817,GO:0016020,GO:0016043,GO:0016049,GO:0016301,GO:0016310,GO:0016323,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021700,GO:0022414,GO:0022622,GO:0023052,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0032878,GO:0032879,GO:0032989,GO:0035091,GO:0035556,GO:0036211,GO:0040007,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044459,GO:0044464,GO:0044706,GO:0045178,GO:0048316,GO:0048364,GO:0048366,GO:0048367,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048764,GO:0048765,GO:0048766,GO:0048767,GO:0048825,GO:0048827,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0060560,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071695,GO:0071704,GO:0071840,GO:0071944,GO:0080147,GO:0080167,GO:0090558,GO:0090567,GO:0090627,GO:0098590,GO:0099402,GO:0140096,GO:1901564,GO:1901981,GO:1905392,GO:2000012,GO:2000114
Evalue2.03e-174
EggNOG OGsKOG0610@1|root,KOG0610@2759|Eukaryota
Descriptionprotein serine/threonine kinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8498Ggra8498Gracilaria gracilis GNS1m malegenetig00000041_pilon 890845..892757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8498.t1Ggra8498.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 890845..892757 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8498.t1.stop1Ggra8498.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 890845..890847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8498.t1.CDS1Ggra8498.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 890845..891036 -
Ggra8498.t1.CDS2Ggra8498.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 891153..891556 -
Ggra8498.t1.CDS3Ggra8498.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000041_pilon 891854..892757 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8498.t1.exon1Ggra8498.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 890845..891036 -
Ggra8498.t1.exon2Ggra8498.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 891153..891556 -
Ggra8498.t1.exon3Ggra8498.t1.exon3Gracilaria gracilis GNS1m maleexontig00000041_pilon 891854..892757 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8498.t1.intron1Ggra8498.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 891037..891152 -
Ggra8498.t1.intron2Ggra8498.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000041_pilon 891557..891853 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8498.t1.start1Ggra8498.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 892755..892757 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8498.t1 ID=Ggra8498.t1|Name=Ggra8498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp
MSDSRAQSQRQKPRSAPAPSTSASSLRQSDSKPDPAFRERMNQSRTGGHQ
AEPQPPNSATSTPSHGSAPSPYLMNSSPGGASSSDNGRLTRGRSVFPPYR
DNTILHTVSVPCSPAFPVKDDQIGPRHFTRLKLLGRGGIGQVFLVRLKNT
DKLYAMKVLSRDEMIQKNKVKRVMTEREILATANHPFIVTMYASFQTPDR
LCFVMDYCAGGEFFRVLQRQPKRRLKEDAVRFYAAEVILALEYLHHMGFI
YRDLKPENILMRENGHIALTDFDLSKQAHAVPPRVVKMQLSFQDKLRKSL
LKRTNSSLNSFEIVSSEPVLPYQTNSFVGTEEYIAPEVVNGVSQSSAVDW
WTLGILIYEMLTGTTPFKGSYTDETFKNIVNENVKFPDDINISNDCKHLV
KKLLHRDADKRLGSQEGATEIKKSRWFRDFNFALIRNETPPIIPKIRDPN
DLSQYRRMPEDDDTSSAAPSTSSGHMDDDANNPFRHFNLTKSDSLQRQY*
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spliced messenger RNA

>Ggra8498.t1 ID=Ggra8498.t1|Name=Ggra8498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000041_pilon:890845..892757- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGATTCCCGTGCGCAATCACAGCGACAGAAACCACGGTCGGCACC
TGCCCCCTCCACCTCCGCTTCTTCTCTGCGCCAGTCCGATTCCAAGCCCG
ACCCCGCCTTCCGTGAGCGTATGAACCAGAGCCGTACTGGCGGCCACCAG
GCCGAGCCGCAGCCTCCCAATTCCGCCACCTCCACCCCCTCACATGGCTC
AGCGCCCTCTCCTTACTTGATGAATTCCTCGCCAGGCGGCGCTTCCTCCT
CCGACAACGGTCGTCTCACCAGAGGCCGATCCGTGTTCCCTCCGTACCGC
GATAACACCATCCTGCATACAGTCTCAGTGCCGTGCTCCCCCGCTTTCCC
TGTCAAGGACGACCAAATCGGTCCCAGGCATTTCACCCGCCTCAAGCTGC
TCGGCCGCGGTGGTATTGGTCAAGTTTTTCTCGTTCGGCTCAAAAATACC
GACAAGCTGTATGCCATGAAGGTTTTGTCGCGCGACGAAATGATTCAGAA
GAACAAGGTAAAACGAGTCATGACCGAACGCGAGATTCTCGCAACCGCCA
ACCATCCCTTCATCGTCACCATGTACGCCTCCTTCCAGACGCCCGACCGC
CTTTGTTTCGTCATGGACTATTGTGCCGGCGGCGAGTTCTTCCGCGTCCT
ACAACGCCAACCCAAGCGCCGCCTCAAGGAGGACGCCGTCCGTTTCTACG
CGGCGGAGGTCATTCTCGCCCTCGAGTACCTGCATCACATGGGTTTCATC
TACAGGGACCTCAAACCTGAAAACATCCTTATGCGAGAGAACGGCCATAT
AGCACTAACCGACTTTGACCTCTCAAAACAGGCACATGCTGTTCCACCAC
GCGTCGTCAAGATGCAGTTGTCATTCCAGGACAAACTCCGCAAGTCTTTA
CTGAAAAGGACAAATTCATCGCTGAACAGCTTCGAAATAGTCAGCTCAGA
ACCGGTCCTTCCTTATCAAACCAACTCATTTGTCGGAACAGAAGAGTACA
TTGCACCCGAAGTGGTCAATGGTGTTAGCCAGAGCTCTGCGGTCGATTGG
TGGACTCTCGGGATTCTCATATACGAAATGCTCACTGGAACTACCCCGTT
CAAAGGGAGTTACACTGATGAAACATTTAAGAATATTGTGAATGAGAACG
TGAAGTTCCCCGACGATATCAACATCAGTAACGACTGCAAGCATCTTGTC
AAGAAGCTTTTGCACCGAGATGCGGATAAGCGTTTGGGGTCGCAAGAAGG
TGCCACGGAAATCAAGAAAAGCCGGTGGTTTAGGGACTTCAACTTTGCGC
TAATACGGAATGAAACGCCTCCAATTATTCCCAAGATCCGGGATCCGAAT
GACCTATCTCAGTATCGGCGGATGCCTGAAGACGATGACACTTCAAGCGC
CGCACCATCAACGTCGTCAGGGCATATGGACGATGATGCCAACAACCCAT
TCCGCCACTTCAACCTGACGAAAAGTGATAGTCTTCAACGCCAGTATTAG
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protein sequence of Ggra8498.t1

>Ggra8498.t1 ID=Ggra8498.t1|Name=Ggra8498.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=500bp
MSDSRAQSQRQKPRSAPAPSTSASSLRQSDSKPDPAFRERMNQSRTGGHQ
AEPQPPNSATSTPSHGSAPSPYLMNSSPGGASSSDNGRLTRGRSVFPPYR
DNTILHTVSVPCSPAFPVKDDQIGPRHFTRLKLLGRGGIGQVFLVRLKNT
DKLYAMKVLSRDEMIQKNKVKRVMTEREILATANHPFIVTMYASFQTPDR
LCFVMDYCAGGEFFRVLQRQPKRRLKEDAVRFYAAEVILALEYLHHMGFI
YRDLKPENILMRENGHIALTDFDLSKQAHAVPPRVVKMQLSFQDKLRKSL
LKRTNSSLNSFEIVSSEPVLPYQTNSFVGTEEYIAPEVVNGVSQSSAVDW
WTLGILIYEMLTGTTPFKGSYTDETFKNIVNENVKFPDDINISNDCKHLV
KKLLHRDADKRLGSQEGATEIKKSRWFRDFNFALIRNETPPIIPKIRDPN
DLSQYRRMPEDDDTSSAAPSTSSGHMDDDANNPFRHFNLTKSDSLQRQY*
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mRNA from alignment at tig00000041_pilon:890845..892757-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8498.t1 ID=Ggra8498.t1|Name=Ggra8498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1913bp|location=Sequence derived from alignment at tig00000041_pilon:890845..892757- (Gracilaria gracilis GNS1m male)
ATGAGCGATTCCCGTGCGCAATCACAGCGACAGAAACCACGGTCGGCACC
TGCCCCCTCCACCTCCGCTTCTTCTCTGCGCCAGTCCGATTCCAAGCCCG
ACCCCGCCTTCCGTGAGCGTATGAACCAGAGCCGTACTGGCGGCCACCAG
GCCGAGCCGCAGCCTCCCAATTCCGCCACCTCCACCCCCTCACATGGCTC
AGCGCCCTCTCCTTACTTGATGAATTCCTCGCCAGGCGGCGCTTCCTCCT
CCGACAACGGTCGTCTCACCAGAGGCCGATCCGTGTTCCCTCCGTACCGC
GATAACACCATCCTGCATACAGTCTCAGTGCCGTGCTCCCCCGCTTTCCC
TGTCAAGGACGACCAAATCGGTCCCAGGCATTTCACCCGCCTCAAGCTGC
TCGGCCGCGGTGGTATTGGTCAAGTTTTTCTCGTTCGGCTCAAAAATACC
GACAAGCTGTATGCCATGAAGGTTTTGTCGCGCGACGAAATGATTCAGAA
GAACAAGGTAAAACGAGTCATGACCGAACGCGAGATTCTCGCAACCGCCA
ACCATCCCTTCATCGTCACCATGTACGCCTCCTTCCAGACGCCCGACCGC
CTTTGTTTCGTCATGGACTATTGTGCCGGCGGCGAGTTCTTCCGCGTCCT
ACAACGCCAACCCAAGCGCCGCCTCAAGGAGGACGCCGTCCGTTTCTACG
CGGCGGAGGTCATTCTCGCCCTCGAGTACCTGCATCACATGGGTTTCATC
TACAGGGACCTCAAACCTGAAAACATCCTTATGCGAGAGAACGGCCATAT
AGCACTAACCGACTTTGACCTCTCAAAACAGGCACATGCTGTTCCACCAC
GCGTCGTCAAGATGCAGTTGTCATTCCAGGACAAACTCCGCAAGTCTTTA
CTGAGTACGTTCCTTGTTATGTCACTTTTAACGAGTTTGTTTCCGTGCTG
CGTACCATGCTTCTCGTCGACAGACCTCCGATAACGCGTTATCACTTCCT
TCGCGCGGTATGCGTTCACAGCAATGCATAATTTTTTGGTTGCCTGTCCT
CGTTCCTGTCGGGGTCCAACACCTTGCGCATGCTGCTTTGCCGCCGATGA
ACTTTCCCTTCCCCGTGATGCACCTTACTAACTTATTCCCTGTATCTGTT
TTGTCCCTTTTGCCAACTTTCTTTATTGCTCTCGCGTCTTCTCACGTACA
GAAAGGACAAATTCATCGCTGAACAGCTTCGAAATAGTCAGCTCAGAACC
GGTCCTTCCTTATCAAACCAACTCATTTGTCGGAACAGAAGAGTACATTG
CACCCGAAGTGGTCAATGGTGTTAGCCAGAGCTCTGCGGTCGATTGGTGG
ACTCTCGGGATTCTCATATACGAAATGCTCACTGGAACTACCCCGTTCAA
AGGGAGTTACACTGATGAAACATTTAAGAATATTGTGAATGAGAACGTGA
AGTTCCCCGACGATATCAACATCAGTAACGACTGCAAGCATCTTGTCAAG
AAGCTTTTGCACCGAGATGCGGATAAGCGTTTGGGGTCGCAAGAAGGTGC
CACGGAAATCAAGAAAAGCCGGTGGTTTAGGGACTTCAACTTTGCGCTAA
TACGGGTACGTTGCTCTCATTTTTTCTTCGATTCTCCTTCCTTTTTGTTT
CTATTCGTCACCACAACATTGCTGACATTGACTTCTGTTCCTTCAAATTG
TGCGAACTGCGAAACGTATAGAATGAAACGCCTCCAATTATTCCCAAGAT
CCGGGATCCGAATGACCTATCTCAGTATCGGCGGATGCCTGAAGACGATG
ACACTTCAAGCGCCGCACCATCAACGTCGTCAGGGCATATGGACGATGAT
GCCAACAACCCATTCCGCCACTTCAACCTGACGAAAAGTGATAGTCTTCA
ACGCCAGTATTAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:890845..892757-

>Ggra8498.t1 ID=Ggra8498.t1|Name=Ggra8498.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00000041_pilon:890845..892757- (Gracilaria gracilis GNS1m male)
ATGAGCGATTCCCGTGCGCAATCACAGCGACAGAAACCACGGTCGGCACC
TGCCCCCTCCACCTCCGCTTCTTCTCTGCGCCAGTCCGATTCCAAGCCCG
ACCCCGCCTTCCGTGAGCGTATGAACCAGAGCCGTACTGGCGGCCACCAG
GCCGAGCCGCAGCCTCCCAATTCCGCCACCTCCACCCCCTCACATGGCTC
AGCGCCCTCTCCTTACTTGATGAATTCCTCGCCAGGCGGCGCTTCCTCCT
CCGACAACGGTCGTCTCACCAGAGGCCGATCCGTGTTCCCTCCGTACCGC
GATAACACCATCCTGCATACAGTCTCAGTGCCGTGCTCCCCCGCTTTCCC
TGTCAAGGACGACCAAATCGGTCCCAGGCATTTCACCCGCCTCAAGCTGC
TCGGCCGCGGTGGTATTGGTCAAGTTTTTCTCGTTCGGCTCAAAAATACC
GACAAGCTGTATGCCATGAAGGTTTTGTCGCGCGACGAAATGATTCAGAA
GAACAAGGTAAAACGAGTCATGACCGAACGCGAGATTCTCGCAACCGCCA
ACCATCCCTTCATCGTCACCATGTACGCCTCCTTCCAGACGCCCGACCGC
CTTTGTTTCGTCATGGACTATTGTGCCGGCGGCGAGTTCTTCCGCGTCCT
ACAACGCCAACCCAAGCGCCGCCTCAAGGAGGACGCCGTCCGTTTCTACG
CGGCGGAGGTCATTCTCGCCCTCGAGTACCTGCATCACATGGGTTTCATC
TACAGGGACCTCAAACCTGAAAACATCCTTATGCGAGAGAACGGCCATAT
AGCACTAACCGACTTTGACCTCTCAAAACAGGCACATGCTGTTCCACCAC
GCGTCGTCAAGATGCAGTTGTCATTCCAGGACAAACTCCGCAAGTCTTTA
CTGAAAAGGACAAATTCATCGCTGAACAGCTTCGAAATAGTCAGCTCAGA
ACCGGTCCTTCCTTATCAAACCAACTCATTTGTCGGAACAGAAGAGTACA
TTGCACCCGAAGTGGTCAATGGTGTTAGCCAGAGCTCTGCGGTCGATTGG
TGGACTCTCGGGATTCTCATATACGAAATGCTCACTGGAACTACCCCGTT
CAAAGGGAGTTACACTGATGAAACATTTAAGAATATTGTGAATGAGAACG
TGAAGTTCCCCGACGATATCAACATCAGTAACGACTGCAAGCATCTTGTC
AAGAAGCTTTTGCACCGAGATGCGGATAAGCGTTTGGGGTCGCAAGAAGG
TGCCACGGAAATCAAGAAAAGCCGGTGGTTTAGGGACTTCAACTTTGCGC
TAATACGGAATGAAACGCCTCCAATTATTCCCAAGATCCGGGATCCGAAT
GACCTATCTCAGTATCGGCGGATGCCTGAAGACGATGACACTTCAAGCGC
CGCACCATCAACGTCGTCAGGGCATATGGACGATGATGCCAACAACCCAT
TCCGCCACTTCAACCTGACGAAAAGTGATAGTCTTCAACGCCAGTATTAG
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