Ggra849.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra849.t1
Unique Name	Ggra849.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	756

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000202_pilon	contig	tig00000202_pilon:99460..101727 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMF033CT
PFAMs	DEAD,GUCT,Helicase_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K16911
KEGG Pathway	ko01110,map01110
Evalue	4.1e-143
EggNOG OGs	COG0513@1\|root,KOG0331@2759\|Eukaryota
EC	3.6.4.13
Description	helicase activity
COG category	L
BRITE	ko00000,ko01000,ko03009,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra849	Ggra849	Gracilaria gracilis GNS1m male	gene	tig00000202_pilon 99460..101727 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra849.t1.start1	Ggra849.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000202_pilon 99460..99462 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra849.t1.CDS1	Ggra849.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000202_pilon 99460..101727 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra849.t1.exon1	Ggra849.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000202_pilon 99460..101727 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra849.t1.stop1	Ggra849.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000202_pilon 101725..101727 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra849.t1	Ggra849.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000202_pilon 99460..101727 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000202_pilon:99460..101727+
coding sequence from alignment at tig00000202_pilon:99460..101727+

mRNA sequence

>Ggra849.t1 ID=Ggra849.t1|Name=Ggra849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp
MVAVRTAFTPALPLRLTPFTAASRLTCPTTVLRPRYVRSCVVAPSLDSQS
KAVAQGAAAAEPLTVLDGALPSPIQSSLEPLQTDAPSDAAADYSAPEETS
NARPTMSSFRLSHSTVERLAENGIIHPTEVQTGTFDNLYDGKDLIAKSRT
GTGKTLAFALPILERLAILKSERQYDSRQGPACIVLAPTRELAKQVGREM
SYIGGGLNISVECFYGGSAYGPQEGALRRGIDVVVGTPGRVMDHLDRGNL
RLSNIAFAVLDEADEMLSMGFSQDVETIFETLPSKEERQVILFSATVPPW
VKSLASQFQKDDVIMFDAITSGTMASTTVRHCAVRVPEREEARASLLADI
IAVHSPTKDENLEANGVRTPSRVIVFTQTKREADDLATSGALDGCGAAVL
HGDVSQKQREVTLSQFRNGQFQVLVATDVAARGLDISGVDVVVQYRVPHD
SESYIHRAGRTGRAGRSGTAVVMYSDREARNLRGLERDCKIKFDMEVAPA
PEAALEAAVDVAISNISTVDERVLRHLIPRAAEIAKKGEESTETIAAILA
IACRRVRLEDRSVLSGEKGMRTLHITSETRQPLNPGAALRIIKELSRDAN
LDGHVGLIRMCQDGSVVLDVRSEGADELLSTGDRVMADTGLSLALCTGVP
VLRDNERRRNDRTDRRRYDDRRRDDRRGDDRRGDDRRGYSRGGGRREGGY
FRGGTRRDGYGKEGGYRRDRYDRDGYGGRNNSRSRFDRRDNFRQRRSPDL
LSDDF*

spliced messenger RNA

>Ggra849.t1 ID=Ggra849.t1|Name=Ggra849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000202_pilon:99460..101727+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCGTTCGCACCGCCTTCACGCCGGCGCTTCCGCTGCGCTTGAC
GCCCTTCACCGCTGCGTCGCGTCTCACCTGCCCGACCACCGTGCTGCGCC
CGCGCTATGTGCGCTCTTGTGTCGTTGCCCCTTCTCTGGATTCGCAGTCC
AAAGCCGTCGCACAGGGCGCCGCCGCTGCAGAACCGCTTACCGTACTTGA
TGGTGCCCTGCCCTCTCCTATTCAGTCTTCCTTAGAGCCGCTGCAGACTG
ACGCGCCGTCTGACGCCGCTGCCGACTACTCTGCTCCGGAGGAGACCTCT
AACGCAAGGCCTACCATGTCGTCGTTTCGTTTGTCGCATTCCACCGTGGA
ACGTTTGGCAGAGAATGGTATCATTCACCCTACCGAAGTTCAGACTGGCA
CGTTTGACAACCTGTACGACGGAAAGGATCTCATCGCAAAGTCACGCACT
GGTACAGGCAAGACGCTTGCCTTCGCGTTGCCTATCCTCGAAAGACTGGC
CATTTTGAAGAGCGAGCGCCAGTACGACTCGCGTCAAGGACCTGCATGTA
TTGTGCTTGCGCCCACCAGGGAGCTGGCAAAGCAGGTTGGTCGTGAGATG
TCCTACATTGGTGGTGGCCTTAACATATCTGTCGAGTGCTTTTACGGCGG
CTCTGCATACGGGCCGCAAGAAGGTGCACTCCGAAGAGGCATTGACGTCG
TTGTTGGTACCCCAGGTAGAGTTATGGATCATCTGGACCGCGGCAATTTG
CGTTTATCTAACATTGCCTTTGCCGTTCTGGATGAGGCTGATGAAATGCT
CAGCATGGGCTTTTCGCAGGATGTGGAGACCATCTTTGAGACTTTGCCCT
CGAAGGAGGAGCGTCAAGTCATTCTGTTTTCCGCCACAGTTCCTCCATGG
GTGAAGAGTCTTGCGTCTCAATTCCAAAAGGATGATGTCATCATGTTCGA
TGCCATCACATCGGGTACAATGGCGTCCACAACAGTTCGTCACTGTGCGG
TCCGTGTTCCGGAGCGAGAAGAGGCTAGAGCTTCATTGTTGGCTGATATC
ATCGCTGTGCATAGTCCGACAAAGGACGAGAACCTTGAAGCCAATGGCGT
TCGCACGCCGAGTCGCGTCATTGTTTTCACGCAGACGAAGAGAGAAGCTG
ATGACTTGGCTACATCAGGTGCCCTCGACGGCTGTGGTGCAGCAGTTCTT
CATGGAGATGTTTCTCAGAAACAGCGTGAAGTAACTCTCTCTCAATTCAG
AAATGGACAGTTCCAAGTGCTTGTAGCAACGGACGTTGCTGCAAGAGGTT
TGGACATCAGTGGCGTGGACGTCGTGGTGCAGTATCGGGTTCCTCATGAT
TCGGAGTCGTACATTCACCGCGCAGGACGAACGGGACGTGCTGGAAGGTC
CGGTACAGCCGTAGTGATGTACAGCGACCGTGAGGCCCGTAATCTACGCG
GACTGGAACGTGACTGCAAGATCAAGTTCGACATGGAGGTGGCGCCTGCG
CCGGAAGCTGCTCTAGAAGCAGCAGTGGACGTGGCAATATCTAACATTAG
CACTGTGGACGAGCGCGTTCTAAGGCATTTGATACCACGCGCTGCAGAAA
TTGCAAAGAAGGGCGAGGAGAGCACGGAAACTATTGCGGCAATTCTGGCT
ATTGCGTGCAGACGCGTGCGATTGGAAGATCGGAGTGTGCTGAGTGGGGA
GAAGGGAATGCGGACTTTGCATATCACGAGTGAAACAAGACAGCCATTGA
ATCCTGGGGCAGCTTTGCGAATTATCAAGGAGCTGTCAAGAGACGCCAAC
TTGGACGGACATGTTGGACTGATTCGAATGTGTCAGGACGGGTCTGTTGT
GCTTGACGTACGTAGTGAGGGTGCCGACGAACTTCTATCCACCGGTGACA
GAGTAATGGCGGATACTGGACTGAGCTTGGCTCTGTGCACGGGAGTACCA
GTTTTGCGCGATAACGAGCGACGACGCAATGACCGCACTGACCGCCGCCG
TTACGATGACCGACGCCGCGATGACCGCCGCGGTGATGACCGCCGCGGTG
ATGACCGTCGAGGTTACTCCAGAGGCGGTGGTCGACGGGAAGGAGGATAC
TTCCGAGGTGGAACCCGACGAGATGGATACGGGAAGGAGGGCGGTTACCG
GAGAGATAGGTACGATCGGGATGGTTACGGTGGACGTAACAATAGCAGAT
CACGATTTGATCGACGGGATAACTTTCGTCAACGACGCTCTCCGGACTTG
TTGTCGGATGACTTCTGA

protein sequence of Ggra849.t1

>Ggra849.t1 ID=Ggra849.t1|Name=Ggra849.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=756bp
MVAVRTAFTPALPLRLTPFTAASRLTCPTTVLRPRYVRSCVVAPSLDSQS
KAVAQGAAAAEPLTVLDGALPSPIQSSLEPLQTDAPSDAAADYSAPEETS
NARPTMSSFRLSHSTVERLAENGIIHPTEVQTGTFDNLYDGKDLIAKSRT
GTGKTLAFALPILERLAILKSERQYDSRQGPACIVLAPTRELAKQVGREM
SYIGGGLNISVECFYGGSAYGPQEGALRRGIDVVVGTPGRVMDHLDRGNL
RLSNIAFAVLDEADEMLSMGFSQDVETIFETLPSKEERQVILFSATVPPW
VKSLASQFQKDDVIMFDAITSGTMASTTVRHCAVRVPEREEARASLLADI
IAVHSPTKDENLEANGVRTPSRVIVFTQTKREADDLATSGALDGCGAAVL
HGDVSQKQREVTLSQFRNGQFQVLVATDVAARGLDISGVDVVVQYRVPHD
SESYIHRAGRTGRAGRSGTAVVMYSDREARNLRGLERDCKIKFDMEVAPA
PEAALEAAVDVAISNISTVDERVLRHLIPRAAEIAKKGEESTETIAAILA
IACRRVRLEDRSVLSGEKGMRTLHITSETRQPLNPGAALRIIKELSRDAN
LDGHVGLIRMCQDGSVVLDVRSEGADELLSTGDRVMADTGLSLALCTGVP
VLRDNERRRNDRTDRRRYDDRRRDDRRGDDRRGDDRRGYSRGGGRREGGY
FRGGTRRDGYGKEGGYRRDRYDRDGYGGRNNSRSRFDRRDNFRQRRSPDL
LSDDF*

mRNA from alignment at tig00000202_pilon:99460..101727+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra849.t1 ID=Ggra849.t1|Name=Ggra849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000202_pilon:99460..101727+ (Gracilaria gracilis GNS1m male)
ATGGTTGCCGTTCGCACCGCCTTCACGCCGGCGCTTCCGCTGCGCTTGAC
GCCCTTCACCGCTGCGTCGCGTCTCACCTGCCCGACCACCGTGCTGCGCC
CGCGCTATGTGCGCTCTTGTGTCGTTGCCCCTTCTCTGGATTCGCAGTCC
AAAGCCGTCGCACAGGGCGCCGCCGCTGCAGAACCGCTTACCGTACTTGA
TGGTGCCCTGCCCTCTCCTATTCAGTCTTCCTTAGAGCCGCTGCAGACTG
ACGCGCCGTCTGACGCCGCTGCCGACTACTCTGCTCCGGAGGAGACCTCT
AACGCAAGGCCTACCATGTCGTCGTTTCGTTTGTCGCATTCCACCGTGGA
ACGTTTGGCAGAGAATGGTATCATTCACCCTACCGAAGTTCAGACTGGCA
CGTTTGACAACCTGTACGACGGAAAGGATCTCATCGCAAAGTCACGCACT
GGTACAGGCAAGACGCTTGCCTTCGCGTTGCCTATCCTCGAAAGACTGGC
CATTTTGAAGAGCGAGCGCCAGTACGACTCGCGTCAAGGACCTGCATGTA
TTGTGCTTGCGCCCACCAGGGAGCTGGCAAAGCAGGTTGGTCGTGAGATG
TCCTACATTGGTGGTGGCCTTAACATATCTGTCGAGTGCTTTTACGGCGG
CTCTGCATACGGGCCGCAAGAAGGTGCACTCCGAAGAGGCATTGACGTCG
TTGTTGGTACCCCAGGTAGAGTTATGGATCATCTGGACCGCGGCAATTTG
CGTTTATCTAACATTGCCTTTGCCGTTCTGGATGAGGCTGATGAAATGCT
CAGCATGGGCTTTTCGCAGGATGTGGAGACCATCTTTGAGACTTTGCCCT
CGAAGGAGGAGCGTCAAGTCATTCTGTTTTCCGCCACAGTTCCTCCATGG
GTGAAGAGTCTTGCGTCTCAATTCCAAAAGGATGATGTCATCATGTTCGA
TGCCATCACATCGGGTACAATGGCGTCCACAACAGTTCGTCACTGTGCGG
TCCGTGTTCCGGAGCGAGAAGAGGCTAGAGCTTCATTGTTGGCTGATATC
ATCGCTGTGCATAGTCCGACAAAGGACGAGAACCTTGAAGCCAATGGCGT
TCGCACGCCGAGTCGCGTCATTGTTTTCACGCAGACGAAGAGAGAAGCTG
ATGACTTGGCTACATCAGGTGCCCTCGACGGCTGTGGTGCAGCAGTTCTT
CATGGAGATGTTTCTCAGAAACAGCGTGAAGTAACTCTCTCTCAATTCAG
AAATGGACAGTTCCAAGTGCTTGTAGCAACGGACGTTGCTGCAAGAGGTT
TGGACATCAGTGGCGTGGACGTCGTGGTGCAGTATCGGGTTCCTCATGAT
TCGGAGTCGTACATTCACCGCGCAGGACGAACGGGACGTGCTGGAAGGTC
CGGTACAGCCGTAGTGATGTACAGCGACCGTGAGGCCCGTAATCTACGCG
GACTGGAACGTGACTGCAAGATCAAGTTCGACATGGAGGTGGCGCCTGCG
CCGGAAGCTGCTCTAGAAGCAGCAGTGGACGTGGCAATATCTAACATTAG
CACTGTGGACGAGCGCGTTCTAAGGCATTTGATACCACGCGCTGCAGAAA
TTGCAAAGAAGGGCGAGGAGAGCACGGAAACTATTGCGGCAATTCTGGCT
ATTGCGTGCAGACGCGTGCGATTGGAAGATCGGAGTGTGCTGAGTGGGGA
GAAGGGAATGCGGACTTTGCATATCACGAGTGAAACAAGACAGCCATTGA
ATCCTGGGGCAGCTTTGCGAATTATCAAGGAGCTGTCAAGAGACGCCAAC
TTGGACGGACATGTTGGACTGATTCGAATGTGTCAGGACGGGTCTGTTGT
GCTTGACGTACGTAGTGAGGGTGCCGACGAACTTCTATCCACCGGTGACA
GAGTAATGGCGGATACTGGACTGAGCTTGGCTCTGTGCACGGGAGTACCA
GTTTTGCGCGATAACGAGCGACGACGCAATGACCGCACTGACCGCCGCCG
TTACGATGACCGACGCCGCGATGACCGCCGCGGTGATGACCGCCGCGGTG
ATGACCGTCGAGGTTACTCCAGAGGCGGTGGTCGACGGGAAGGAGGATAC
TTCCGAGGTGGAACCCGACGAGATGGATACGGGAAGGAGGGCGGTTACCG
GAGAGATAGGTACGATCGGGATGGTTACGGTGGACGTAACAATAGCAGAT
CACGATTTGATCGACGGGATAACTTTCGTCAACGACGCTCTCCGGACTTG
TTGTCGGATGACTTCTGA

Coding sequence (CDS) from alignment at tig00000202_pilon:99460..101727+

>Ggra849.t1 ID=Ggra849.t1|Name=Ggra849.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2268bp|location=Sequence derived from alignment at tig00000202_pilon:99460..101727+ (Gracilaria gracilis GNS1m male)
ATGGTTGCCGTTCGCACCGCCTTCACGCCGGCGCTTCCGCTGCGCTTGAC
GCCCTTCACCGCTGCGTCGCGTCTCACCTGCCCGACCACCGTGCTGCGCC
CGCGCTATGTGCGCTCTTGTGTCGTTGCCCCTTCTCTGGATTCGCAGTCC
AAAGCCGTCGCACAGGGCGCCGCCGCTGCAGAACCGCTTACCGTACTTGA
TGGTGCCCTGCCCTCTCCTATTCAGTCTTCCTTAGAGCCGCTGCAGACTG
ACGCGCCGTCTGACGCCGCTGCCGACTACTCTGCTCCGGAGGAGACCTCT
AACGCAAGGCCTACCATGTCGTCGTTTCGTTTGTCGCATTCCACCGTGGA
ACGTTTGGCAGAGAATGGTATCATTCACCCTACCGAAGTTCAGACTGGCA
CGTTTGACAACCTGTACGACGGAAAGGATCTCATCGCAAAGTCACGCACT
GGTACAGGCAAGACGCTTGCCTTCGCGTTGCCTATCCTCGAAAGACTGGC
CATTTTGAAGAGCGAGCGCCAGTACGACTCGCGTCAAGGACCTGCATGTA
TTGTGCTTGCGCCCACCAGGGAGCTGGCAAAGCAGGTTGGTCGTGAGATG
TCCTACATTGGTGGTGGCCTTAACATATCTGTCGAGTGCTTTTACGGCGG
CTCTGCATACGGGCCGCAAGAAGGTGCACTCCGAAGAGGCATTGACGTCG
TTGTTGGTACCCCAGGTAGAGTTATGGATCATCTGGACCGCGGCAATTTG
CGTTTATCTAACATTGCCTTTGCCGTTCTGGATGAGGCTGATGAAATGCT
CAGCATGGGCTTTTCGCAGGATGTGGAGACCATCTTTGAGACTTTGCCCT
CGAAGGAGGAGCGTCAAGTCATTCTGTTTTCCGCCACAGTTCCTCCATGG
GTGAAGAGTCTTGCGTCTCAATTCCAAAAGGATGATGTCATCATGTTCGA
TGCCATCACATCGGGTACAATGGCGTCCACAACAGTTCGTCACTGTGCGG
TCCGTGTTCCGGAGCGAGAAGAGGCTAGAGCTTCATTGTTGGCTGATATC
ATCGCTGTGCATAGTCCGACAAAGGACGAGAACCTTGAAGCCAATGGCGT
TCGCACGCCGAGTCGCGTCATTGTTTTCACGCAGACGAAGAGAGAAGCTG
ATGACTTGGCTACATCAGGTGCCCTCGACGGCTGTGGTGCAGCAGTTCTT
CATGGAGATGTTTCTCAGAAACAGCGTGAAGTAACTCTCTCTCAATTCAG
AAATGGACAGTTCCAAGTGCTTGTAGCAACGGACGTTGCTGCAAGAGGTT
TGGACATCAGTGGCGTGGACGTCGTGGTGCAGTATCGGGTTCCTCATGAT
TCGGAGTCGTACATTCACCGCGCAGGACGAACGGGACGTGCTGGAAGGTC
CGGTACAGCCGTAGTGATGTACAGCGACCGTGAGGCCCGTAATCTACGCG
GACTGGAACGTGACTGCAAGATCAAGTTCGACATGGAGGTGGCGCCTGCG
CCGGAAGCTGCTCTAGAAGCAGCAGTGGACGTGGCAATATCTAACATTAG
CACTGTGGACGAGCGCGTTCTAAGGCATTTGATACCACGCGCTGCAGAAA
TTGCAAAGAAGGGCGAGGAGAGCACGGAAACTATTGCGGCAATTCTGGCT
ATTGCGTGCAGACGCGTGCGATTGGAAGATCGGAGTGTGCTGAGTGGGGA
GAAGGGAATGCGGACTTTGCATATCACGAGTGAAACAAGACAGCCATTGA
ATCCTGGGGCAGCTTTGCGAATTATCAAGGAGCTGTCAAGAGACGCCAAC
TTGGACGGACATGTTGGACTGATTCGAATGTGTCAGGACGGGTCTGTTGT
GCTTGACGTACGTAGTGAGGGTGCCGACGAACTTCTATCCACCGGTGACA
GAGTAATGGCGGATACTGGACTGAGCTTGGCTCTGTGCACGGGAGTACCA
GTTTTGCGCGATAACGAGCGACGACGCAATGACCGCACTGACCGCCGCCG
TTACGATGACCGACGCCGCGATGACCGCCGCGGTGATGACCGCCGCGGTG
ATGACCGTCGAGGTTACTCCAGAGGCGGTGGTCGACGGGAAGGAGGATAC
TTCCGAGGTGGAACCCGACGAGATGGATACGGGAAGGAGGGCGGTTACCG
GAGAGATAGGTACGATCGGGATGGTTACGGTGGACGTAACAATAGCAGAT
CACGATTTGATCGACGGGATAACTTTCGTCAACGACGCTCTCCGGACTTG
TTGTCGGATGACTTCTGA