Ggra8488.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8488.t1
Unique NameGgra8488.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:864421..864846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_82264
PFAMsSdh5
Max annot lvl2759|Eukaryota
Evalue1.31e-17
EggNOG OGs2E4QS@1|root,2SBJV@2759|Eukaryota
DescriptionFlavinator of succinate dehydrogenase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8488Ggra8488Gracilaria gracilis GNS1m malegenetig00000041_pilon 864421..864846 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8488.t1.start1Ggra8488.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 864421..864423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8488.t1.CDS1Ggra8488.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 864421..864846 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8488.t1.exon1Ggra8488.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 864421..864846 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8488.t1.stop1Ggra8488.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 864844..864846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8488.t1Ggra8488.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 864421..864846 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8488.t1 ID=Ggra8488.t1|Name=Ggra8488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=142bp
MQRLSAIQNCCSHLKIFSKTSFTVRSLATGVKQWQAEHLRAPQGGAQIPD
HVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLD
ADTPDVLKWVLGQKDPPVQFQNEIMDSLREYALGDGHVNER*
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spliced messenger RNA

>Ggra8488.t1 ID=Ggra8488.t1|Name=Ggra8488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00000041_pilon:864421..864846+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGACTTTCGGCCATTCAAAATTGCTGCTCACATCTGAAGATCTT
CTCCAAAACCTCATTCACGGTACGGAGTCTCGCTACAGGTGTGAAACAAT
GGCAAGCTGAGCACCTACGTGCACCACAGGGAGGCGCACAGATTCCTGAT
CACGTTTCGATGCGGCAAAGACGAATTATATATCGGAGCAAACAAAGAGG
TTGGCTGGAGCTTGATATCCTCTTTGGCAACTGGGCTGCGAAGCACGTAC
CGCTGATGAATGAGGACGAAAAGCTGACTATGACTGAGGACTTGTTAGAT
GCTGATACACCTGATGTTCTCAAATGGGTACTGGGACAGAAGGATCCTCC
CGTTCAGTTCCAGAACGAGATTATGGACAGTTTGAGAGAGTATGCTTTGG
GTGATGGTCATGTGAATGAACGTTGA
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protein sequence of Ggra8488.t1

>Ggra8488.t1 ID=Ggra8488.t1|Name=Ggra8488.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=142bp
MQRLSAIQNCCSHLKIFSKTSFTVRSLATGVKQWQAEHLRAPQGGAQIPD
HVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLD
ADTPDVLKWVLGQKDPPVQFQNEIMDSLREYALGDGHVNER*
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mRNA from alignment at tig00000041_pilon:864421..864846+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8488.t1 ID=Ggra8488.t1|Name=Ggra8488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00000041_pilon:864421..864846+ (Gracilaria gracilis GNS1m male)
ATGCAGCGACTTTCGGCCATTCAAAATTGCTGCTCACATCTGAAGATCTT
CTCCAAAACCTCATTCACGGTACGGAGTCTCGCTACAGGTGTGAAACAAT
GGCAAGCTGAGCACCTACGTGCACCACAGGGAGGCGCACAGATTCCTGAT
CACGTTTCGATGCGGCAAAGACGAATTATATATCGGAGCAAACAAAGAGG
TTGGCTGGAGCTTGATATCCTCTTTGGCAACTGGGCTGCGAAGCACGTAC
CGCTGATGAATGAGGACGAAAAGCTGACTATGACTGAGGACTTGTTAGAT
GCTGATACACCTGATGTTCTCAAATGGGTACTGGGACAGAAGGATCCTCC
CGTTCAGTTCCAGAACGAGATTATGGACAGTTTGAGAGAGTATGCTTTGG
GTGATGGTCATGTGAATGAACGTTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:864421..864846+

>Ggra8488.t1 ID=Ggra8488.t1|Name=Ggra8488.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=426bp|location=Sequence derived from alignment at tig00000041_pilon:864421..864846+ (Gracilaria gracilis GNS1m male)
ATGCAGCGACTTTCGGCCATTCAAAATTGCTGCTCACATCTGAAGATCTT
CTCCAAAACCTCATTCACGGTACGGAGTCTCGCTACAGGTGTGAAACAAT
GGCAAGCTGAGCACCTACGTGCACCACAGGGAGGCGCACAGATTCCTGAT
CACGTTTCGATGCGGCAAAGACGAATTATATATCGGAGCAAACAAAGAGG
TTGGCTGGAGCTTGATATCCTCTTTGGCAACTGGGCTGCGAAGCACGTAC
CGCTGATGAATGAGGACGAAAAGCTGACTATGACTGAGGACTTGTTAGAT
GCTGATACACCTGATGTTCTCAAATGGGTACTGGGACAGAAGGATCCTCC
CGTTCAGTTCCAGAACGAGATTATGGACAGTTTGAGAGAGTATGCTTTGG
GTGATGGTCATGTGAATGAACGTTGA
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