Ggra8483.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8483.t1
Unique NameGgra8483.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length502
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:849353..850858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704120.1
Preferred namePYK1
PFAMsPK,PK_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00015
KEGG koko:K00873
KEGG ReactionR00200,R00430,R01138,R01858,R02320
KEGG Pathwayko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230
KEGG ModuleM00001,M00002,M00049,M00050
GOsGO:0003674,GO:0003824,GO:0004743,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009267,GO:0009277,GO:0009435,GO:0009605,GO:0009607,GO:0009986,GO:0009987,GO:0009991,GO:0016020,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0030312,GO:0030445,GO:0030446,GO:0030447,GO:0031347,GO:0031349,GO:0031667,GO:0031668,GO:0031669,GO:0032787,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035821,GO:0036170,GO:0036180,GO:0040007,GO:0042594,GO:0042866,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044003,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044403,GO:0044416,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048518,GO:0048583,GO:0048584,GO:0050789,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055086,GO:0055114,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0065007,GO:0071496,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0075136,GO:0080134,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue4.23e-226
EggNOG OGsCOG0469@1|root,KOG2323@2759|Eukaryota
EC2.7.1.40
Descriptionpyruvate kinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8483Ggra8483Gracilaria gracilis GNS1m malegenetig00000041_pilon 849353..850858 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8483.t1.stop1Ggra8483.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 849353..849355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8483.t1.CDS1Ggra8483.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 849353..850858 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8483.t1.exon1Ggra8483.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 849353..850858 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8483.t1.start1Ggra8483.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 850856..850858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8483.t1Ggra8483.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 849353..850858 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8483.t1 ID=Ggra8483.t1|Name=Ggra8483.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=502bp
MTSLENNLKISYKRDGAFSSEKGRIRSKVICTVGRYVDQKRLGALVDAGM
NVMRLNFSHGDHKHHATAISNLRTYLATAGRMCGIMLDTKGPEIRTGKLE
GGNEINLKAGETIVLLSDFSHVGNTQMIGHSYASMVSTVSEGSEILIDDG
LISLTVMSTDTATNKVFCRINNDGVLGETKGVNLPGAQVDLPALTDKDKA
DLKFGCEQQVDMVAASFIRKASDVVSIRDFLRANGGASIKIMSKIENQEG
LENFDGILEQSDAIMVARGDLGVEIPIEKVAIAQKMMISKCNVAGKPVVT
ATQMLDSMIKNPRPTRAETTDVANAVFDGSDCVMLSGETAKGLYPAEAVG
TMVGICREAEKMLDYRYVFQSLRSHHRTQNMTITETITASAVKTAYDLNA
AIILCLTETGNTGRLVCKYRPISPVICVTSNETTARQLLIHRAAFPLVVG
SFVGTESLIARVLNRSTAAGFCKKGDLVVLVSGMREGVSGGTNILRVIRN
E*
back to top

spliced messenger RNA

>Ggra8483.t1 ID=Ggra8483.t1|Name=Ggra8483.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000041_pilon:849353..850858- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGCTTGGAGAATAACCTCAAGATCTCTTACAAGAGGGACGGCGC
CTTCAGTTCCGAAAAGGGCCGAATTCGCAGCAAGGTCATCTGCACCGTCG
GTAGGTATGTCGATCAAAAGCGTCTCGGCGCGCTGGTCGACGCCGGTATG
AACGTCATGCGTCTCAACTTCTCGCACGGCGATCACAAGCACCATGCCAC
CGCCATCTCCAACCTGCGCACCTACCTGGCTACCGCCGGCCGCATGTGCG
GCATCATGCTCGATACCAAGGGTCCCGAGATTCGCACCGGAAAGCTTGAA
GGCGGCAATGAGATTAATCTCAAAGCTGGCGAAACCATTGTGCTTCTGTC
TGATTTCTCCCACGTCGGTAATACTCAAATGATCGGCCATTCGTACGCCA
GTATGGTTTCCACTGTCAGTGAGGGTTCTGAGATTCTTATCGATGACGGC
CTCATCTCGTTGACCGTTATGAGTACCGATACCGCCACCAATAAGGTCTT
CTGTCGTATCAATAACGATGGCGTGCTTGGAGAGACCAAGGGCGTCAATT
TGCCGGGCGCTCAGGTCGATCTTCCGGCCCTCACAGACAAGGACAAGGCT
GATCTCAAGTTTGGCTGCGAGCAGCAGGTTGACATGGTCGCCGCCTCCTT
CATCAGAAAGGCCTCTGACGTCGTCAGCATTCGCGATTTCCTGCGCGCCA
ATGGCGGCGCCTCTATCAAGATTATGTCAAAGATCGAGAATCAAGAAGGA
CTTGAAAACTTTGACGGCATTTTGGAACAATCCGACGCTATCATGGTTGC
TCGCGGCGATCTTGGCGTCGAGATCCCTATCGAGAAGGTCGCCATTGCTC
AGAAGATGATGATTTCAAAGTGTAATGTCGCTGGAAAACCCGTTGTTACC
GCCACCCAGATGCTTGATAGTATGATTAAGAACCCGCGTCCGACCCGCGC
TGAAACCACTGACGTTGCCAATGCCGTGTTTGACGGGTCGGATTGCGTCA
TGCTTTCTGGCGAGACTGCGAAAGGACTGTATCCTGCGGAGGCTGTTGGT
ACTATGGTTGGTATTTGCCGGGAAGCTGAGAAAATGCTTGACTATCGTTA
TGTGTTCCAGTCTTTGAGAAGTCACCATCGCACTCAGAATATGACCATTA
CCGAAACAATTACCGCATCGGCTGTCAAGACAGCTTATGATCTGAATGCC
GCTATTATACTCTGCCTTACAGAAACCGGTAATACAGGGCGATTGGTGTG
CAAGTATCGTCCCATCAGCCCGGTTATTTGCGTCACTTCGAATGAAACTA
CTGCTCGTCAACTGCTCATTCATCGAGCCGCTTTCCCGCTCGTTGTTGGT
TCGTTTGTAGGGACTGAGTCTCTCATTGCTAGAGTTCTTAACCGATCTAC
TGCCGCTGGCTTTTGTAAGAAGGGCGATCTTGTCGTGTTGGTTTCGGGCA
TGCGAGAGGGTGTGTCAGGAGGAACAAACATCCTCCGCGTTATCAGGAAT
GAGTAG
back to top

protein sequence of Ggra8483.t1

>Ggra8483.t1 ID=Ggra8483.t1|Name=Ggra8483.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=502bp
MTSLENNLKISYKRDGAFSSEKGRIRSKVICTVGRYVDQKRLGALVDAGM
NVMRLNFSHGDHKHHATAISNLRTYLATAGRMCGIMLDTKGPEIRTGKLE
GGNEINLKAGETIVLLSDFSHVGNTQMIGHSYASMVSTVSEGSEILIDDG
LISLTVMSTDTATNKVFCRINNDGVLGETKGVNLPGAQVDLPALTDKDKA
DLKFGCEQQVDMVAASFIRKASDVVSIRDFLRANGGASIKIMSKIENQEG
LENFDGILEQSDAIMVARGDLGVEIPIEKVAIAQKMMISKCNVAGKPVVT
ATQMLDSMIKNPRPTRAETTDVANAVFDGSDCVMLSGETAKGLYPAEAVG
TMVGICREAEKMLDYRYVFQSLRSHHRTQNMTITETITASAVKTAYDLNA
AIILCLTETGNTGRLVCKYRPISPVICVTSNETTARQLLIHRAAFPLVVG
SFVGTESLIARVLNRSTAAGFCKKGDLVVLVSGMREGVSGGTNILRVIRN
E*
back to top

mRNA from alignment at tig00000041_pilon:849353..850858-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8483.t1 ID=Ggra8483.t1|Name=Ggra8483.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000041_pilon:849353..850858- (Gracilaria gracilis GNS1m male)
ATGACCAGCTTGGAGAATAACCTCAAGATCTCTTACAAGAGGGACGGCGC
CTTCAGTTCCGAAAAGGGCCGAATTCGCAGCAAGGTCATCTGCACCGTCG
GTAGGTATGTCGATCAAAAGCGTCTCGGCGCGCTGGTCGACGCCGGTATG
AACGTCATGCGTCTCAACTTCTCGCACGGCGATCACAAGCACCATGCCAC
CGCCATCTCCAACCTGCGCACCTACCTGGCTACCGCCGGCCGCATGTGCG
GCATCATGCTCGATACCAAGGGTCCCGAGATTCGCACCGGAAAGCTTGAA
GGCGGCAATGAGATTAATCTCAAAGCTGGCGAAACCATTGTGCTTCTGTC
TGATTTCTCCCACGTCGGTAATACTCAAATGATCGGCCATTCGTACGCCA
GTATGGTTTCCACTGTCAGTGAGGGTTCTGAGATTCTTATCGATGACGGC
CTCATCTCGTTGACCGTTATGAGTACCGATACCGCCACCAATAAGGTCTT
CTGTCGTATCAATAACGATGGCGTGCTTGGAGAGACCAAGGGCGTCAATT
TGCCGGGCGCTCAGGTCGATCTTCCGGCCCTCACAGACAAGGACAAGGCT
GATCTCAAGTTTGGCTGCGAGCAGCAGGTTGACATGGTCGCCGCCTCCTT
CATCAGAAAGGCCTCTGACGTCGTCAGCATTCGCGATTTCCTGCGCGCCA
ATGGCGGCGCCTCTATCAAGATTATGTCAAAGATCGAGAATCAAGAAGGA
CTTGAAAACTTTGACGGCATTTTGGAACAATCCGACGCTATCATGGTTGC
TCGCGGCGATCTTGGCGTCGAGATCCCTATCGAGAAGGTCGCCATTGCTC
AGAAGATGATGATTTCAAAGTGTAATGTCGCTGGAAAACCCGTTGTTACC
GCCACCCAGATGCTTGATAGTATGATTAAGAACCCGCGTCCGACCCGCGC
TGAAACCACTGACGTTGCCAATGCCGTGTTTGACGGGTCGGATTGCGTCA
TGCTTTCTGGCGAGACTGCGAAAGGACTGTATCCTGCGGAGGCTGTTGGT
ACTATGGTTGGTATTTGCCGGGAAGCTGAGAAAATGCTTGACTATCGTTA
TGTGTTCCAGTCTTTGAGAAGTCACCATCGCACTCAGAATATGACCATTA
CCGAAACAATTACCGCATCGGCTGTCAAGACAGCTTATGATCTGAATGCC
GCTATTATACTCTGCCTTACAGAAACCGGTAATACAGGGCGATTGGTGTG
CAAGTATCGTCCCATCAGCCCGGTTATTTGCGTCACTTCGAATGAAACTA
CTGCTCGTCAACTGCTCATTCATCGAGCCGCTTTCCCGCTCGTTGTTGGT
TCGTTTGTAGGGACTGAGTCTCTCATTGCTAGAGTTCTTAACCGATCTAC
TGCCGCTGGCTTTTGTAAGAAGGGCGATCTTGTCGTGTTGGTTTCGGGCA
TGCGAGAGGGTGTGTCAGGAGGAACAAACATCCTCCGCGTTATCAGGAAT
GAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000041_pilon:849353..850858-

>Ggra8483.t1 ID=Ggra8483.t1|Name=Ggra8483.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1506bp|location=Sequence derived from alignment at tig00000041_pilon:849353..850858- (Gracilaria gracilis GNS1m male)
ATGACCAGCTTGGAGAATAACCTCAAGATCTCTTACAAGAGGGACGGCGC
CTTCAGTTCCGAAAAGGGCCGAATTCGCAGCAAGGTCATCTGCACCGTCG
GTAGGTATGTCGATCAAAAGCGTCTCGGCGCGCTGGTCGACGCCGGTATG
AACGTCATGCGTCTCAACTTCTCGCACGGCGATCACAAGCACCATGCCAC
CGCCATCTCCAACCTGCGCACCTACCTGGCTACCGCCGGCCGCATGTGCG
GCATCATGCTCGATACCAAGGGTCCCGAGATTCGCACCGGAAAGCTTGAA
GGCGGCAATGAGATTAATCTCAAAGCTGGCGAAACCATTGTGCTTCTGTC
TGATTTCTCCCACGTCGGTAATACTCAAATGATCGGCCATTCGTACGCCA
GTATGGTTTCCACTGTCAGTGAGGGTTCTGAGATTCTTATCGATGACGGC
CTCATCTCGTTGACCGTTATGAGTACCGATACCGCCACCAATAAGGTCTT
CTGTCGTATCAATAACGATGGCGTGCTTGGAGAGACCAAGGGCGTCAATT
TGCCGGGCGCTCAGGTCGATCTTCCGGCCCTCACAGACAAGGACAAGGCT
GATCTCAAGTTTGGCTGCGAGCAGCAGGTTGACATGGTCGCCGCCTCCTT
CATCAGAAAGGCCTCTGACGTCGTCAGCATTCGCGATTTCCTGCGCGCCA
ATGGCGGCGCCTCTATCAAGATTATGTCAAAGATCGAGAATCAAGAAGGA
CTTGAAAACTTTGACGGCATTTTGGAACAATCCGACGCTATCATGGTTGC
TCGCGGCGATCTTGGCGTCGAGATCCCTATCGAGAAGGTCGCCATTGCTC
AGAAGATGATGATTTCAAAGTGTAATGTCGCTGGAAAACCCGTTGTTACC
GCCACCCAGATGCTTGATAGTATGATTAAGAACCCGCGTCCGACCCGCGC
TGAAACCACTGACGTTGCCAATGCCGTGTTTGACGGGTCGGATTGCGTCA
TGCTTTCTGGCGAGACTGCGAAAGGACTGTATCCTGCGGAGGCTGTTGGT
ACTATGGTTGGTATTTGCCGGGAAGCTGAGAAAATGCTTGACTATCGTTA
TGTGTTCCAGTCTTTGAGAAGTCACCATCGCACTCAGAATATGACCATTA
CCGAAACAATTACCGCATCGGCTGTCAAGACAGCTTATGATCTGAATGCC
GCTATTATACTCTGCCTTACAGAAACCGGTAATACAGGGCGATTGGTGTG
CAAGTATCGTCCCATCAGCCCGGTTATTTGCGTCACTTCGAATGAAACTA
CTGCTCGTCAACTGCTCATTCATCGAGCCGCTTTCCCGCTCGTTGTTGGT
TCGTTTGTAGGGACTGAGTCTCTCATTGCTAGAGTTCTTAACCGATCTAC
TGCCGCTGGCTTTTGTAAGAAGGGCGATCTTGTCGTGTTGGTTTCGGGCA
TGCGAGAGGGTGTGTCAGGAGGAACAAACATCCTCCGCGTTATCAGGAAT
GAGTAG
back to top