Ggra8481.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8481.t2
Unique NameGgra8481.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:835082..835519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706629.1
PFAMsATP-grasp_4
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00090
KEGG koko:K14755
KEGG ReactionR00910,R00912,R01164,R01991,R03286
KEGG Pathwayko00330,ko00340,ko00410,map00330,map00340,map00410
Evalue3.37e-44
EggNOG OGsCOG0439@1|root,2RN4Y@2759|Eukaryota
EC6.3.2.11
DescriptionATP-grasp domain
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8481Ggra8481Gracilaria gracilis GNS1m malegenetig00000041_pilon 835082..836722 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8481.t2.stop1Ggra8481.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 835082..835084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8481.t2.CDS1Ggra8481.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 835082..835519 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8481.t2.exon1Ggra8481.t2.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 835082..835519 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8481.t2.start1Ggra8481.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 835517..835519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8481.t2Ggra8481.t2Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 835082..835519 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8481.t2 ID=Ggra8481.t2|Name=Ggra8481.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=146bp
MGGVSVRDANLLAWGVDLVEEHCMSALKIPIRPLTPKQPLQFMAESALNA
PYSGVINEDDWLAFARQSKLVRKTSYLKQKGDKVCGPEDGIPDWIGEIVV
VSERSTEEAVMEIKRIVDSCKVPITASVPGNEREFFFPGSSHPFS*
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spliced messenger RNA

>Ggra8481.t2 ID=Ggra8481.t2|Name=Ggra8481.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00000041_pilon:835082..835519- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGGTGTCTCTGTCCGTGATGCGAACCTGCTTGCGTGGGGAGTGGA
TTTGGTAGAAGAGCACTGCATGAGCGCTCTGAAAATCCCCATAAGGCCTT
TAACACCAAAGCAGCCGCTCCAGTTCATGGCAGAATCTGCACTCAATGCC
CCGTATTCTGGTGTCATAAACGAAGACGACTGGCTTGCGTTTGCTAGGCA
AAGCAAGTTGGTGCGGAAGACGAGTTATCTAAAGCAAAAAGGGGACAAGG
TTTGTGGTCCAGAGGACGGTATTCCCGATTGGATTGGAGAAATAGTCGTT
GTTAGTGAACGCAGCACGGAGGAAGCCGTGATGGAAATTAAGAGGATTGT
AGACAGTTGCAAGGTTCCGATCACCGCTTCAGTCCCTGGTAACGAGCGAG
AGTTTTTCTTCCCGGGCAGCAGTCATCCTTTTTCCTAG
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protein sequence of Ggra8481.t2

>Ggra8481.t2 ID=Ggra8481.t2|Name=Ggra8481.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=146bp
MGGVSVRDANLLAWGVDLVEEHCMSALKIPIRPLTPKQPLQFMAESALNA
PYSGVINEDDWLAFARQSKLVRKTSYLKQKGDKVCGPEDGIPDWIGEIVV
VSERSTEEAVMEIKRIVDSCKVPITASVPGNEREFFFPGSSHPFS*
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mRNA from alignment at tig00000041_pilon:835082..835519-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8481.t2 ID=Ggra8481.t2|Name=Ggra8481.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00000041_pilon:835082..835519- (Gracilaria gracilis GNS1m male)
ATGGGGGGTGTCTCTGTCCGTGATGCGAACCTGCTTGCGTGGGGAGTGGA
TTTGGTAGAAGAGCACTGCATGAGCGCTCTGAAAATCCCCATAAGGCCTT
TAACACCAAAGCAGCCGCTCCAGTTCATGGCAGAATCTGCACTCAATGCC
CCGTATTCTGGTGTCATAAACGAAGACGACTGGCTTGCGTTTGCTAGGCA
AAGCAAGTTGGTGCGGAAGACGAGTTATCTAAAGCAAAAAGGGGACAAGG
TTTGTGGTCCAGAGGACGGTATTCCCGATTGGATTGGAGAAATAGTCGTT
GTTAGTGAACGCAGCACGGAGGAAGCCGTGATGGAAATTAAGAGGATTGT
AGACAGTTGCAAGGTTCCGATCACCGCTTCAGTCCCTGGTAACGAGCGAG
AGTTTTTCTTCCCGGGCAGCAGTCATCCTTTTTCCTAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:835082..835519-

>Ggra8481.t2 ID=Ggra8481.t2|Name=Ggra8481.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=438bp|location=Sequence derived from alignment at tig00000041_pilon:835082..835519- (Gracilaria gracilis GNS1m male)
ATGGGGGGTGTCTCTGTCCGTGATGCGAACCTGCTTGCGTGGGGAGTGGA
TTTGGTAGAAGAGCACTGCATGAGCGCTCTGAAAATCCCCATAAGGCCTT
TAACACCAAAGCAGCCGCTCCAGTTCATGGCAGAATCTGCACTCAATGCC
CCGTATTCTGGTGTCATAAACGAAGACGACTGGCTTGCGTTTGCTAGGCA
AAGCAAGTTGGTGCGGAAGACGAGTTATCTAAAGCAAAAAGGGGACAAGG
TTTGTGGTCCAGAGGACGGTATTCCCGATTGGATTGGAGAAATAGTCGTT
GTTAGTGAACGCAGCACGGAGGAAGCCGTGATGGAAATTAAGAGGATTGT
AGACAGTTGCAAGGTTCCGATCACCGCTTCAGTCCCTGGTAACGAGCGAG
AGTTTTTCTTCCCGGGCAGCAGTCATCCTTTTTCCTAG
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