Ggra8480.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8480.t1
Unique Name	Ggra8480.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	469

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:833318..834724 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8480	Ggra8480	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 833318..834724 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8480.t1.start1	Ggra8480.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 833318..833320 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8480.t1.CDS1	Ggra8480.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 833318..834724 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8480.t1.exon1	Ggra8480.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 833318..834724 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8480.t1.stop1	Ggra8480.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 834722..834724 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8480.t1	Ggra8480.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 833318..834724 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:833318..834724+
coding sequence from alignment at tig00000041_pilon:833318..834724+

mRNA sequence

>Ggra8480.t1 ID=Ggra8480.t1|Name=Ggra8480.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=469bp
MSSRVSFETDDDDGDDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFA
GLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDASSTSAQSSDS
PSFPSLSASSSSQERSSSGLGAELAHRGKRGAVVSEKPRLDLLFVFDASG
ALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELD
RDLDAVRRRILSSFQGDANNWDTNDMYIYEVGDQMWGNALRKVDSLVNDP
GKNNDIQTISEGDIEEPPTVQATEVPPAMNGMCREAHLALKWSRYEMIPP
AANKHIQSQLLNAQRLRRVVLINAGELTKGGTSGQGLKTAFKEKMEMEKL
GIRLVTIGIGESQDPELSKLGTGKSSLNASSVAEVVNLVPKLVEMIVRSD
YRFDGQVLRSAPVIRKRMKKSREKAKEKRKHIYNALRLKNNDADENVRKG
ISRRASELPPWFTDSENI*

spliced messenger RNA

>Ggra8480.t1 ID=Ggra8480.t1|Name=Ggra8480.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00000041_pilon:833318..834724+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGCAGGGTTAGCTTTGAAACAgatgatgatgacggtgatgatga
CTCACCATGGACTCATGTATGGCGCAGTGCATCTGAACTTTCTGAGTCAA
TTGTGGAAATGGGACAGGAAGCGGCTGCTGCAGTAGGGGGGCAATTTGCT
GGTCTTCTGAAGCCTGGGGGGGCTCGTGTACGTCCTCCACAAGTGATAAC
AAGGCTAGCTGTTCCTGGGATGTGCTTGGCACTGAGCCAGTTGTCTCCTG
ACTCTGCGGGATCCGACGCTTCTTCAACATCTGCCCAATCTTCTGATTCT
CCGTCTTTTCCGTCTTTATCTGCGTCGTCCTCGTCCCAGGAGCGATCAAG
TTCAGGACTAGGGGCAGAGCTTGCACATCGCGGAAAAAGGGGAGCTGTTG
TGAGTGAGAAACCTAGACTTGATCTTTTGTTTGTTTTCGATGCGTCTGGA
GCTCTTTCATGGAGAGATTACCGGAGAATGAAGGAAATTCTTTCCACTCC
TGGTGGTGTAATTGACAATGTGCAGAAGCAAGTTCATGATGGATCTCGTA
TGGGTTTTGTGGAATATGCTTATGATTCGGTGGTGGTTTCAGAGCTTGAC
AGGGATCTCGATGCGGTCAGGAGACGAATTCTGAGTTCATTCCAAGGCGA
TGCGAACAACTGGGACACTAACGATATGTACATATATGAAGTTGGAGATC
AGATGTGGGGAAATGCGTTAAGAAAAGTGGACAGCTTGGTGAATGATCCA
GGAAAGAACAATGATATTCAAACTATAAGTGAGGGTGATATTGAAGAGCC
GCCGACTGTGCAGGCAACAGAGGTACCACCAGCTATGAATGGAATGTGTA
GAGAAGCCCATCTCGCCCTGAAATGGTCTAGATATGAAATGATACCTCCC
GCTGCGAACAAGCATATTCAGTCACAACTGTTGAACGCTCAAAGACTACG
CCGAGTCGTCCTGATAAATGCTGGAGAGCTGACGAAAGGCGGTACGAGTG
GGCAAGGGTTGAAGACTGCCTTTAAAGAAAAGATGGAAATGGAGAAGCTA
GGAATTCGTCTTGTAACGATTGGTATTGGAGAAAGCCAAGACCCTGAGCT
ATCGAAGCTAGGGACTGGGAAGTCATCATTGAATGCCTCTTCGGTTGCTG
AAGTTGTCAACTTGGTGCCGAAACTTGTTGAAATGATTGTACGGTCAGAT
TATCGGTTTGACGGGCAAGTTTTGCGAAGTGCGCCGGTGATTCGGAAGCG
GATGAAGAAGTCTAGAGAAAAGGCCAAGGAAAAGAGAAAGCATATATATA
ACGCTCTTCGTCTGAAGAACAATGATGCGGACGAAAATGTTCGGAAAGGA
ATATCCAGGAGGGCTAGCGAGCTCCCTCCTTGGTTCACTGATAGCGAGAA
TATTTGA

protein sequence of Ggra8480.t1

>Ggra8480.t1 ID=Ggra8480.t1|Name=Ggra8480.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=469bp
MSSRVSFETDDDDGDDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFA
GLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDASSTSAQSSDS
PSFPSLSASSSSQERSSSGLGAELAHRGKRGAVVSEKPRLDLLFVFDASG
ALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELD
RDLDAVRRRILSSFQGDANNWDTNDMYIYEVGDQMWGNALRKVDSLVNDP
GKNNDIQTISEGDIEEPPTVQATEVPPAMNGMCREAHLALKWSRYEMIPP
AANKHIQSQLLNAQRLRRVVLINAGELTKGGTSGQGLKTAFKEKMEMEKL
GIRLVTIGIGESQDPELSKLGTGKSSLNASSVAEVVNLVPKLVEMIVRSD
YRFDGQVLRSAPVIRKRMKKSREKAKEKRKHIYNALRLKNNDADENVRKG
ISRRASELPPWFTDSENI*

mRNA from alignment at tig00000041_pilon:833318..834724+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8480.t1 ID=Ggra8480.t1|Name=Ggra8480.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00000041_pilon:833318..834724+ (Gracilaria gracilis GNS1m male)
ATGTCCAGCAGGGTTAGCTTTGAAACAgatgatgatgacggtgatgatga
CTCACCATGGACTCATGTATGGCGCAGTGCATCTGAACTTTCTGAGTCAA
TTGTGGAAATGGGACAGGAAGCGGCTGCTGCAGTAGGGGGGCAATTTGCT
GGTCTTCTGAAGCCTGGGGGGGCTCGTGTACGTCCTCCACAAGTGATAAC
AAGGCTAGCTGTTCCTGGGATGTGCTTGGCACTGAGCCAGTTGTCTCCTG
ACTCTGCGGGATCCGACGCTTCTTCAACATCTGCCCAATCTTCTGATTCT
CCGTCTTTTCCGTCTTTATCTGCGTCGTCCTCGTCCCAGGAGCGATCAAG
TTCAGGACTAGGGGCAGAGCTTGCACATCGCGGAAAAAGGGGAGCTGTTG
TGAGTGAGAAACCTAGACTTGATCTTTTGTTTGTTTTCGATGCGTCTGGA
GCTCTTTCATGGAGAGATTACCGGAGAATGAAGGAAATTCTTTCCACTCC
TGGTGGTGTAATTGACAATGTGCAGAAGCAAGTTCATGATGGATCTCGTA
TGGGTTTTGTGGAATATGCTTATGATTCGGTGGTGGTTTCAGAGCTTGAC
AGGGATCTCGATGCGGTCAGGAGACGAATTCTGAGTTCATTCCAAGGCGA
TGCGAACAACTGGGACACTAACGATATGTACATATATGAAGTTGGAGATC
AGATGTGGGGAAATGCGTTAAGAAAAGTGGACAGCTTGGTGAATGATCCA
GGAAAGAACAATGATATTCAAACTATAAGTGAGGGTGATATTGAAGAGCC
GCCGACTGTGCAGGCAACAGAGGTACCACCAGCTATGAATGGAATGTGTA
GAGAAGCCCATCTCGCCCTGAAATGGTCTAGATATGAAATGATACCTCCC
GCTGCGAACAAGCATATTCAGTCACAACTGTTGAACGCTCAAAGACTACG
CCGAGTCGTCCTGATAAATGCTGGAGAGCTGACGAAAGGCGGTACGAGTG
GGCAAGGGTTGAAGACTGCCTTTAAAGAAAAGATGGAAATGGAGAAGCTA
GGAATTCGTCTTGTAACGATTGGTATTGGAGAAAGCCAAGACCCTGAGCT
ATCGAAGCTAGGGACTGGGAAGTCATCATTGAATGCCTCTTCGGTTGCTG
AAGTTGTCAACTTGGTGCCGAAACTTGTTGAAATGATTGTACGGTCAGAT
TATCGGTTTGACGGGCAAGTTTTGCGAAGTGCGCCGGTGATTCGGAAGCG
GATGAAGAAGTCTAGAGAAAAGGCCAAGGAAAAGAGAAAGCATATATATA
ACGCTCTTCGTCTGAAGAACAATGATGCGGACGAAAATGTTCGGAAAGGA
ATATCCAGGAGGGCTAGCGAGCTCCCTCCTTGGTTCACTGATAGCGAGAA
TATTTGA

Coding sequence (CDS) from alignment at tig00000041_pilon:833318..834724+

>Ggra8480.t1 ID=Ggra8480.t1|Name=Ggra8480.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1407bp|location=Sequence derived from alignment at tig00000041_pilon:833318..834724+ (Gracilaria gracilis GNS1m male)
ATGTCCAGCAGGGTTAGCTTTGAAACAgatgatgatgacggtgatgatga
CTCACCATGGACTCATGTATGGCGCAGTGCATCTGAACTTTCTGAGTCAA
TTGTGGAAATGGGACAGGAAGCGGCTGCTGCAGTAGGGGGGCAATTTGCT
GGTCTTCTGAAGCCTGGGGGGGCTCGTGTACGTCCTCCACAAGTGATAAC
AAGGCTAGCTGTTCCTGGGATGTGCTTGGCACTGAGCCAGTTGTCTCCTG
ACTCTGCGGGATCCGACGCTTCTTCAACATCTGCCCAATCTTCTGATTCT
CCGTCTTTTCCGTCTTTATCTGCGTCGTCCTCGTCCCAGGAGCGATCAAG
TTCAGGACTAGGGGCAGAGCTTGCACATCGCGGAAAAAGGGGAGCTGTTG
TGAGTGAGAAACCTAGACTTGATCTTTTGTTTGTTTTCGATGCGTCTGGA
GCTCTTTCATGGAGAGATTACCGGAGAATGAAGGAAATTCTTTCCACTCC
TGGTGGTGTAATTGACAATGTGCAGAAGCAAGTTCATGATGGATCTCGTA
TGGGTTTTGTGGAATATGCTTATGATTCGGTGGTGGTTTCAGAGCTTGAC
AGGGATCTCGATGCGGTCAGGAGACGAATTCTGAGTTCATTCCAAGGCGA
TGCGAACAACTGGGACACTAACGATATGTACATATATGAAGTTGGAGATC
AGATGTGGGGAAATGCGTTAAGAAAAGTGGACAGCTTGGTGAATGATCCA
GGAAAGAACAATGATATTCAAACTATAAGTGAGGGTGATATTGAAGAGCC
GCCGACTGTGCAGGCAACAGAGGTACCACCAGCTATGAATGGAATGTGTA
GAGAAGCCCATCTCGCCCTGAAATGGTCTAGATATGAAATGATACCTCCC
GCTGCGAACAAGCATATTCAGTCACAACTGTTGAACGCTCAAAGACTACG
CCGAGTCGTCCTGATAAATGCTGGAGAGCTGACGAAAGGCGGTACGAGTG
GGCAAGGGTTGAAGACTGCCTTTAAAGAAAAGATGGAAATGGAGAAGCTA
GGAATTCGTCTTGTAACGATTGGTATTGGAGAAAGCCAAGACCCTGAGCT
ATCGAAGCTAGGGACTGGGAAGTCATCATTGAATGCCTCTTCGGTTGCTG
AAGTTGTCAACTTGGTGCCGAAACTTGTTGAAATGATTGTACGGTCAGAT
TATCGGTTTGACGGGCAAGTTTTGCGAAGTGCGCCGGTGATTCGGAAGCG
GATGAAGAAGTCTAGAGAAAAGGCCAAGGAAAAGAGAAAGCATATATATA
ACGCTCTTCGTCTGAAGAACAATGATGCGGACGAAAATGTTCGGAAAGGA
ATATCCAGGAGGGCTAGCGAGCTCCCTCCTTGGTTCACTGATAGCGAGAA
TATTTGA