Ggra8479.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8479.t1
Unique NameGgra8479.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length797
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:830584..833187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8479Ggra8479Gracilaria gracilis GNS1m malegenetig00000041_pilon 830584..833187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8479.t1Ggra8479.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 830584..833187 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8479.t1.stop1Ggra8479.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 830584..830586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8479.t1.CDS1Ggra8479.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 830584..831221 -
Ggra8479.t1.CDS2Ggra8479.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 831348..831870 -
Ggra8479.t1.CDS3Ggra8479.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000041_pilon 831958..833187 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8479.t1.exon1Ggra8479.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 830584..831221 -
Ggra8479.t1.exon2Ggra8479.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 831348..831870 -
Ggra8479.t1.exon3Ggra8479.t1.exon3Gracilaria gracilis GNS1m maleexontig00000041_pilon 831958..833187 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8479.t1.intron1Ggra8479.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 831222..831347 -
Ggra8479.t1.intron2Ggra8479.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000041_pilon 831871..831957 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8479.t1.start1Ggra8479.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 833185..833187 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8479.t1 ID=Ggra8479.t1|Name=Ggra8479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=797bp
MPLIPPIPPGKDPPPREVSALESTFPLSPPTTGEMGRGELLSSLLGASTG
LITEAVSLGEGLTEGTHGSKLGKVVVGDSSSTDGLCRSTGDGNTLGLTTL
ELGIPFILVEGLDPENCPVSTSSLDSGDKGIGPVPSRPRLGEADPLKSFE
LGETLLLSSRLGDGSELGDTKDPEALTDTKRLLGLVNTSGLVLTLLVGST
LGLATSPDTLERAKLGDALNDSLTLPNEGDPLLKLADTDTLGETRDPETV
PNDGDGEKRISENEELGDIRDPDTPGDRGVSPKLTDTPELRLALLLGSTV
GLATTPDPLEVEMLGENPICAAMLPREGDILPKLPDKDGLDETKELGPAR
VFKDPLGLTVGLKNEKLGDTGGPEISPNDREGDSRPFENTELGDMRDPDI
AADTSELLGLLGEELKLPDSLPNEGDAELKLPDPDKFGDTTDPDSILNEG
KGESRPADGEELGTMRDSDPPLTVLDAIGLSTGLRPGAESKELGDGAGTE
TLPNDGDVEVKSFGNDALGGSKEPETAAEPSVPLGLPSDGDGEANPFENK
ELDGTTDSDVTMEPNAADAEKLGDPRDPDTSPNDDRLGIAPEPLIPEKLR
EGIVPNVMLAEAAEDRVLDNADDPEVPGDIDEPLTPKDTLGLMLALPNGS
TVGLGTTPDALDWEKLGEELMSPNTLPNDGDPVLKLPDPVTLGEARDPET
TSMDGDGDSGPGDSEKLCETRDPDKGGDTTGSDVWLRITPNPFDREGFGK
KLTCPVVLPSDGDILSAPFDGDPNAPGELLPEVCSSPLIKPKVALG*
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spliced messenger RNA

>Ggra8479.t1 ID=Ggra8479.t1|Name=Ggra8479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2391bp|location=Sequence derived from alignment at tig00000041_pilon:830584..833187- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACTCATACCACCAATACCTCCTGGGAAGGATCCTCCACCTCGAGA
AGTATCCGCGCTTGAGTCGACATTTCCGCTATCACCCCCAACAACGGGAG
AAATGGGACGTGGAGAACTACTGTCATCATTGCTTGGCGCGTCAACAGGA
TTAATAACAGAGGCAGTTTCGTTAGGTGAAGGACTCACTGAGGGTACCCA
TGGTTCAAAGCTAGGAAAAGTTGTGGTCGGTGACTCTTCTTCGACAGATG
GGCTTTGTCGGAGTACAGGGGATGGCAATACGCTTGGACTCACGACACTT
GAACTGGGAATTCCGTTCATACTCGTCGAGGGGCTGGACCCCGAAAATTG
CCCTGTCTCAACGTCATCACTTGATTCCGGTGACAAAGGAATTGGACCAG
TCCCATCTAGACCAAGACTAGGGGAAGCAGATCCCCTGAAATCATTTGAG
CTTGGTGAGACACTGTTACTTAGTTCCAGATTAGGTGATGGCAGCGAACT
TGGGGATACAAAAGACCCTGAGGCACTGACCGACACCAAGAGATTGCTGG
GGCTCGTCAACACATCTGGGCTTGTTCTTACGCTACTAGTTGGTTCCACA
CTAGGGCTGGCAACATCTCCAGATACACTTGAAAGAGCAAAGCTTGGGGA
CGCACTTAACGATTCGCTTACACTTCCAAACGAAGGTGATCCACTGCTGA
AACTTGCCGACACGGATACACTAGGGGAAACAAGAGACCCTGAAACTGTT
CCAAACGACGGAGACGGGGAGAAGAGAATATCCGAGAACGAAGAACTCGG
TGATATAAGAGACCCTGATACGCCTGGAGATAGGGGAGTTTCACCAAAAC
TCACTGACACCCCAGAACTCAGACTAGCGTTGTTACTTGGTTCTACAGTT
GGACTGGCCACCACTCCTGATCCGCTTGAAGTTGAGATGCTCGGCGAAAA
CCCTATTTGCGCCGCAATGCTTCCAAGAGAAGGAGATATACTTCCGAAAC
TACCTGACAAGGACGGCCTGGATGAAACAAAAGAACTTGGACCAGCAAGA
GTGTTCAAGGATCCGCTCGGACTGACTGTTGGGCTCAAAAATGAGAAGCT
TGGTGATACTGGAGGCCCAGAGATAAGCCCGAACGACAGAGAAGGAGATT
CAAGACCATTCGAGAACACAGAACTTGGTGATATGAGAGACCCTGACATT
GCGGCAGACACCAGCGAGCTGCTCGGACTACTTGGCGAAGAGCTCAAGCT
TCCTGACTCACTTCCAAACGAAGGCGATGCCGAACTGAAACTTCCTGATC
CGGATAAGTTCGGAGACACAACGGATCCAGACTCTATACTAAATGAAGGA
AAGGGGGAGAGTAGACCAGCCGATGGAGAGGAGCTCGGTACTATGAGAGA
TTCTGACCCACCGCTCACCGTTCTAGACGCAATAGGACTCAGCACGGGAC
TAAGACCTGGTGCGGAAAGCAAGGAGCTTGGTGATGGGGCAGGTACTGAA
ACACTTCCCAATGATGGAGACGTTGAGGTCAAATCGTTCGGAAACGACGC
ACTGGGCGGCAGCAAAGAACCAGAGACGGCAGCAGAACCAAGCGTCCCAC
TAGGGCTTCCAAGCGATGGAGACGGAGAGGCTAACCCGTTCGAAAACAAA
GAACTCGATGGAACCACGGATTCAGACGTAACCATGGAGCCCAATGCAGC
CGATGCGGAGAAGCTCGGGGACCCAAGAGACCCTGACACAAGTCCAAACG
ACGACAGACTGGGAATAGCTCCAGAGCCACTTATTCCAGAAAAGCTTAGA
GAAGGAATTGTGCCCAACGTCATGCTGGCCGAAGCAGCAGAAGATAGAGT
GCTTGACAATGCCGATGATCCCGAAGTCCCAGGAGATATCGATGAGCCGC
TTACACCCAAGGACACACTCGGGCTTATGCTCGCACTACCAAATGGTTCC
ACGGTAGGGCTGGGAACCACTCCAGATGCGCTTGACTGGGAGAAGCTTGG
GGAGGAACTTATGTCTCCTAACACACTTCCAAACGACGGCGATCCAGTAT
TGAAACTTCCTGACCCTGTTACGCTCGGAGAGGCAAGAGATCCAGAAACA
ACTTCAATGGACGGAGACGGAGACAGTGGACCGGGCGATAGCGAAAAGCT
TTGTGAAACAAGAGACCCTGACAAAGGAGGAGATACCACGGGCTCTGACG
TTTGGCTGAGAATAACCCCCAATCCATTTGACAGAGAGGGGTTCGGGAAG
AAACTTACTTGCCCTGTTGTGCTTCCAAGCGACGGCGATATACTGTCAGC
ACCATTCGATGGAGATCCCAATGCGCCAGGAGAACTACTACCAGAAGTCT
GCAGTTCCCCATTGATTAAACCGAAAGTAGCACTTGGTTGA
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protein sequence of Ggra8479.t1

>Ggra8479.t1 ID=Ggra8479.t1|Name=Ggra8479.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=797bp
MPLIPPIPPGKDPPPREVSALESTFPLSPPTTGEMGRGELLSSLLGASTG
LITEAVSLGEGLTEGTHGSKLGKVVVGDSSSTDGLCRSTGDGNTLGLTTL
ELGIPFILVEGLDPENCPVSTSSLDSGDKGIGPVPSRPRLGEADPLKSFE
LGETLLLSSRLGDGSELGDTKDPEALTDTKRLLGLVNTSGLVLTLLVGST
LGLATSPDTLERAKLGDALNDSLTLPNEGDPLLKLADTDTLGETRDPETV
PNDGDGEKRISENEELGDIRDPDTPGDRGVSPKLTDTPELRLALLLGSTV
GLATTPDPLEVEMLGENPICAAMLPREGDILPKLPDKDGLDETKELGPAR
VFKDPLGLTVGLKNEKLGDTGGPEISPNDREGDSRPFENTELGDMRDPDI
AADTSELLGLLGEELKLPDSLPNEGDAELKLPDPDKFGDTTDPDSILNEG
KGESRPADGEELGTMRDSDPPLTVLDAIGLSTGLRPGAESKELGDGAGTE
TLPNDGDVEVKSFGNDALGGSKEPETAAEPSVPLGLPSDGDGEANPFENK
ELDGTTDSDVTMEPNAADAEKLGDPRDPDTSPNDDRLGIAPEPLIPEKLR
EGIVPNVMLAEAAEDRVLDNADDPEVPGDIDEPLTPKDTLGLMLALPNGS
TVGLGTTPDALDWEKLGEELMSPNTLPNDGDPVLKLPDPVTLGEARDPET
TSMDGDGDSGPGDSEKLCETRDPDKGGDTTGSDVWLRITPNPFDREGFGK
KLTCPVVLPSDGDILSAPFDGDPNAPGELLPEVCSSPLIKPKVALG*
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mRNA from alignment at tig00000041_pilon:830584..833187-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8479.t1 ID=Ggra8479.t1|Name=Ggra8479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2604bp|location=Sequence derived from alignment at tig00000041_pilon:830584..833187- (Gracilaria gracilis GNS1m male)
ATGCCACTCATACCACCAATACCTCCTGGGAAGGATCCTCCACCTCGAGA
AGTATCCGCGCTTGAGTCGACATTTCCGCTATCACCCCCAACAACGGGAG
AAATGGGACGTGGAGAACTACTGTCATCATTGCTTGGCGCGTCAACAGGA
TTAATAACAGAGGCAGTTTCGTTAGGTGAAGGACTCACTGAGGGTACCCA
TGGTTCAAAGCTAGGAAAAGTTGTGGTCGGTGACTCTTCTTCGACAGATG
GGCTTTGTCGGAGTACAGGGGATGGCAATACGCTTGGACTCACGACACTT
GAACTGGGAATTCCGTTCATACTCGTCGAGGGGCTGGACCCCGAAAATTG
CCCTGTCTCAACGTCATCACTTGATTCCGGTGACAAAGGAATTGGACCAG
TCCCATCTAGACCAAGACTAGGGGAAGCAGATCCCCTGAAATCATTTGAG
CTTGGTGAGACACTGTTACTTAGTTCCAGATTAGGTGATGGCAGCGAACT
TGGGGATACAAAAGACCCTGAGGCACTGACCGACACCAAGAGATTGCTGG
GGCTCGTCAACACATCTGGGCTTGTTCTTACGCTACTAGTTGGTTCCACA
CTAGGGCTGGCAACATCTCCAGATACACTTGAAAGAGCAAAGCTTGGGGA
CGCACTTAACGATTCGCTTACACTTCCAAACGAAGGTGATCCACTGCTGA
AACTTGCCGACACGGATACACTAGGGGAAACAAGAGACCCTGAAACTGTT
CCAAACGACGGAGACGGGGAGAAGAGAATATCCGAGAACGAAGAACTCGG
TGATATAAGAGACCCTGATACGCCTGGAGATAGGGGAGTTTCACCAAAAC
TCACTGACACCCCAGAACTCAGACTAGCGTTGTTACTTGGTTCTACAGTT
GGACTGGCCACCACTCCTGATCCGCTTGAAGTTGAGATGCTCGGCGAAAA
CCCTATTTGCGCCGCAATGCTTCCAAGAGAAGGAGATATACTTCCGAAAC
TACCTGACAAGGACGGCCTGGATGAAACAAAAGAACTTGGACCAGCAAGA
GTGTTCAAGGATCCGCTCGGACTGACTGTTGGGCTCAAAAATGAGAAGCT
TGGTGATACTGGAGGCCCAGAGATAAGCCCGAACGACAGAGAAGGAGATT
CAAGACCATTCGAGAACACAGAACTTGGTGATATGAGAGACCCTGACATT
GCGGCAGACACCAGCGAGCTGCTCGGACTAGTTAGCGCACTGGGGCTTGT
CAGTGCACTTGCACTTAGTTCCACAGTCGGGCTGGGAACTACCCCTGATG
CGCTTACCTGAGCAAAGCTTGGCGAAGAGCTCAAGCTTCCTGACTCACTT
CCAAACGAAGGCGATGCCGAACTGAAACTTCCTGATCCGGATAAGTTCGG
AGACACAACGGATCCAGACTCTATACTAAATGAAGGAAAGGGGGAGAGTA
GACCAGCCGATGGAGAGGAGCTCGGTACTATGAGAGATTCTGACCCACCG
CTCACCGTTCTAGACGCAATAGGACTCAGCACGGGACTAAGACCTGGTGC
GGAAAGCAAGGAGCTTGGTGATGGGGCAGGTACTGAAACACTTCCCAATG
ATGGAGACGTTGAGGTCAAATCGTTCGGAAACGACGCACTGGGCGGCAGC
AAAGAACCAGAGACGGCAGCAGAACCAAGCGTCCCACTAGGGCTTCCAAG
CGATGGAGACGGAGAGGCTAACCCGTTCGAAAACAAAGAACTCGATGGAA
CCACGGATTCAGACGTAACCATGGAGCCCAATGCAGCCGATGCGGAGAAG
CTCGGGGACCCAAGAGACCCTGACACAAGTCCAAACGACGGTGAGATAGA
CGCGAAACCAATCGACAACGAAACACTCGGGGGGCTCGGTGAACCTAACC
CTCCAGCAGCGCCAACATTTGTTGACGCCTGAGGGCTAAGCCCAGTGCTA
CCACTGGGCTCGGCAGACAGACTGGGAATAGCTCCAGAGCCACTTATTCC
AGAAAAGCTTAGAGAAGGAATTGTGCCCAACGTCATGCTGGCCGAAGCAG
CAGAAGATAGAGTGCTTGACAATGCCGATGATCCCGAAGTCCCAGGAGAT
ATCGATGAGCCGCTTACACCCAAGGACACACTCGGGCTTATGCTCGCACT
ACCAAATGGTTCCACGGTAGGGCTGGGAACCACTCCAGATGCGCTTGACT
GGGAGAAGCTTGGGGAGGAACTTATGTCTCCTAACACACTTCCAAACGAC
GGCGATCCAGTATTGAAACTTCCTGACCCTGTTACGCTCGGAGAGGCAAG
AGATCCAGAAACAACTTCAATGGACGGAGACGGAGACAGTGGACCGGGCG
ATAGCGAAAAGCTTTGTGAAACAAGAGACCCTGACAAAGGAGGAGATACC
ACGGGCTCTGACGTTTGGCTGAGAATAACCCCCAATCCATTTGACAGAGA
GGGGTTCGGGAAGAAACTTACTTGCCCTGTTGTGCTTCCAAGCGACGGCG
ATATACTGTCAGCACCATTCGATGGAGATCCCAATGCGCCAGGAGAACTA
CTACCAGAAGTCTGCAGTTCCCCATTGATTAAACCGAAAGTAGCACTTGG
TTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:830584..833187-

>Ggra8479.t1 ID=Ggra8479.t1|Name=Ggra8479.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2391bp|location=Sequence derived from alignment at tig00000041_pilon:830584..833187- (Gracilaria gracilis GNS1m male)
ATGCCACTCATACCACCAATACCTCCTGGGAAGGATCCTCCACCTCGAGA
AGTATCCGCGCTTGAGTCGACATTTCCGCTATCACCCCCAACAACGGGAG
AAATGGGACGTGGAGAACTACTGTCATCATTGCTTGGCGCGTCAACAGGA
TTAATAACAGAGGCAGTTTCGTTAGGTGAAGGACTCACTGAGGGTACCCA
TGGTTCAAAGCTAGGAAAAGTTGTGGTCGGTGACTCTTCTTCGACAGATG
GGCTTTGTCGGAGTACAGGGGATGGCAATACGCTTGGACTCACGACACTT
GAACTGGGAATTCCGTTCATACTCGTCGAGGGGCTGGACCCCGAAAATTG
CCCTGTCTCAACGTCATCACTTGATTCCGGTGACAAAGGAATTGGACCAG
TCCCATCTAGACCAAGACTAGGGGAAGCAGATCCCCTGAAATCATTTGAG
CTTGGTGAGACACTGTTACTTAGTTCCAGATTAGGTGATGGCAGCGAACT
TGGGGATACAAAAGACCCTGAGGCACTGACCGACACCAAGAGATTGCTGG
GGCTCGTCAACACATCTGGGCTTGTTCTTACGCTACTAGTTGGTTCCACA
CTAGGGCTGGCAACATCTCCAGATACACTTGAAAGAGCAAAGCTTGGGGA
CGCACTTAACGATTCGCTTACACTTCCAAACGAAGGTGATCCACTGCTGA
AACTTGCCGACACGGATACACTAGGGGAAACAAGAGACCCTGAAACTGTT
CCAAACGACGGAGACGGGGAGAAGAGAATATCCGAGAACGAAGAACTCGG
TGATATAAGAGACCCTGATACGCCTGGAGATAGGGGAGTTTCACCAAAAC
TCACTGACACCCCAGAACTCAGACTAGCGTTGTTACTTGGTTCTACAGTT
GGACTGGCCACCACTCCTGATCCGCTTGAAGTTGAGATGCTCGGCGAAAA
CCCTATTTGCGCCGCAATGCTTCCAAGAGAAGGAGATATACTTCCGAAAC
TACCTGACAAGGACGGCCTGGATGAAACAAAAGAACTTGGACCAGCAAGA
GTGTTCAAGGATCCGCTCGGACTGACTGTTGGGCTCAAAAATGAGAAGCT
TGGTGATACTGGAGGCCCAGAGATAAGCCCGAACGACAGAGAAGGAGATT
CAAGACCATTCGAGAACACAGAACTTGGTGATATGAGAGACCCTGACATT
GCGGCAGACACCAGCGAGCTGCTCGGACTACTTGGCGAAGAGCTCAAGCT
TCCTGACTCACTTCCAAACGAAGGCGATGCCGAACTGAAACTTCCTGATC
CGGATAAGTTCGGAGACACAACGGATCCAGACTCTATACTAAATGAAGGA
AAGGGGGAGAGTAGACCAGCCGATGGAGAGGAGCTCGGTACTATGAGAGA
TTCTGACCCACCGCTCACCGTTCTAGACGCAATAGGACTCAGCACGGGAC
TAAGACCTGGTGCGGAAAGCAAGGAGCTTGGTGATGGGGCAGGTACTGAA
ACACTTCCCAATGATGGAGACGTTGAGGTCAAATCGTTCGGAAACGACGC
ACTGGGCGGCAGCAAAGAACCAGAGACGGCAGCAGAACCAAGCGTCCCAC
TAGGGCTTCCAAGCGATGGAGACGGAGAGGCTAACCCGTTCGAAAACAAA
GAACTCGATGGAACCACGGATTCAGACGTAACCATGGAGCCCAATGCAGC
CGATGCGGAGAAGCTCGGGGACCCAAGAGACCCTGACACAAGTCCAAACG
ACGACAGACTGGGAATAGCTCCAGAGCCACTTATTCCAGAAAAGCTTAGA
GAAGGAATTGTGCCCAACGTCATGCTGGCCGAAGCAGCAGAAGATAGAGT
GCTTGACAATGCCGATGATCCCGAAGTCCCAGGAGATATCGATGAGCCGC
TTACACCCAAGGACACACTCGGGCTTATGCTCGCACTACCAAATGGTTCC
ACGGTAGGGCTGGGAACCACTCCAGATGCGCTTGACTGGGAGAAGCTTGG
GGAGGAACTTATGTCTCCTAACACACTTCCAAACGACGGCGATCCAGTAT
TGAAACTTCCTGACCCTGTTACGCTCGGAGAGGCAAGAGATCCAGAAACA
ACTTCAATGGACGGAGACGGAGACAGTGGACCGGGCGATAGCGAAAAGCT
TTGTGAAACAAGAGACCCTGACAAAGGAGGAGATACCACGGGCTCTGACG
TTTGGCTGAGAATAACCCCCAATCCATTTGACAGAGAGGGGTTCGGGAAG
AAACTTACTTGCCCTGTTGTGCTTCCAAGCGACGGCGATATACTGTCAGC
ACCATTCGATGGAGATCCCAATGCGCCAGGAGAACTACTACCAGAAGTCT
GCAGTTCCCCATTGATTAAACCGAAAGTAGCACTTGGTTGA
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