Ggra8456.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8456.t1
Unique NameGgra8456.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:768667..769464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706613.1
Preferred nameZPR1
PFAMszf-ZPR1
Max annot lvl2759|Eukaryota
KEGG koko:K06874,ko:K09025
KEGG Pathwayko03320,map03320
GOsGO:0000082,GO:0000083,GO:0000086,GO:0000226,GO:0000278,GO:0001701,GO:0001763,GO:0001824,GO:0001832,GO:0001833,GO:0001834,GO:0002009,GO:0002181,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006401,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007424,GO:0007430,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009653,GO:0009719,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0012501,GO:0015030,GO:0016043,GO:0016070,GO:0016604,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021510,GO:0022008,GO:0022402,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030575,GO:0030576,GO:0030971,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031641,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032880,GO:0032991,GO:0033120,GO:0033157,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0034655,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035295,GO:0036477,GO:0040007,GO:0040008,GO:0042023,GO:0042221,GO:0042306,GO:0042307,GO:0042594,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045893,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046872,GO:0046914,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051239,GO:0051252,GO:0051254,GO:0051716,GO:0051960,GO:0060255,GO:0060341,GO:0060429,GO:0060446,GO:0060541,GO:0060548,GO:0060562,GO:0061138,GO:0061564,GO:0061770,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071363,GO:0071364,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071931,GO:0080090,GO:0090087,GO:0090304,GO:0090316,GO:0097458,GO:0097504,GO:0120025,GO:0120036,GO:0120038,GO:0150034,GO:1900180,GO:1900182,GO:1901214,GO:1901215,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902680,GO:1902742,GO:1903047,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951,GO:1990261,GO:1990782,GO:2000026,GO:2000112,GO:2000671,GO:2000672,GO:2001141
Evalue3.4e-30
EggNOG OGsCOG1779@1|root,KOG2703@2759|Eukaryota
Descriptionpre-mRNA catabolic process
COG categoryZ
BRITEko00000,ko00001,ko00536
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8456Ggra8456Gracilaria gracilis GNS1m malegenetig00000041_pilon 768667..769464 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8456.t1.start1Ggra8456.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 768667..768669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8456.t1.CDS1Ggra8456.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 768667..769464 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8456.t1.exon1Ggra8456.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 768667..769464 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8456.t1.stop1Ggra8456.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 769462..769464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8456.t1Ggra8456.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 768667..769464 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8456.t1 ID=Ggra8456.t1|Name=Ggra8456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MCATAFAFATVSPLRRGVLGARTLCSRRAAPRASSRAPQPQPQPQPQPQP
QPQPQRQPPQAPAAATEFEIVRHERIFQRYQTVFQRDVRFPSGRTVSFDV
LGTQHSDFKSVLVLPFNRASRRATLLREYAPGRNAEALSFVGGMFDAARH
VDVAHAARAELSEEARLTGGKLLPLAARGVAADKYSLNEFFFFLALDCVA
DEAPPPRDDDEWISEVFDAPLRHVRRLIGAGQLNTPHSLLGLLALDKLRE
LGFGDDDDDDDARLP*
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spliced messenger RNA

>Ggra8456.t1 ID=Ggra8456.t1|Name=Ggra8456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000041_pilon:768667..769464+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCACCGCCTTCGCCTTCGCCACCGTCTCGCCGCTGCGCCGCGG
CGTGCTCGGCGCGCGCACGCTGTGCTCGCGCCGCGCTGCGCCGCGCGCCA
GTAGCCGCGCgccgcagccgcagccgcagccgcagccgcagccgcagccg
cagccgcagccgcagcGCCAACCGCCGCAGGCGCCGGCAGCGGCGACAGA
GTTCGAAATCGTTCGCCACGAGCGCATCTTCCAGCGCTACCAGACGGTGT
TCCAGCGCGACGTGCGCTTCCCGTCGGGGCGCACGGTGTCGTTCGACGTG
CTGGGCACGCAGCACAGTGACTTCAAGTCCGTGCTAGTGCTGCCGTTCAA
CCGCGCGTCGCGCCGCGCCACGCTGCTGCGCGAGTACGCGCCGGGGCGCA
ACGCCGAGGCGCTGTCATTCGTGGGCGGCATGTTCGACGCGGCGCGCCAC
GTCGACGTGGCGCACGCCGCGCGCGCAGAGCTCAGCGAGGAGGCGCGTCT
CACGGGCGGCAAGCTGCTGCCGCTGGCCGCCCGCGGCGTGGCGGCTGACA
AGTATAGCCTTAACGAGTTCTTCTTCTTCCTGGCGCTGGACTGCGTGGCG
GACGAGGCGCCGCCGCCGCGCGACGACGACGAGTGGATCAGTGAGGTGTT
CGACGCGCCGCTGCGCCACGTCAGACGCCTCATTGGCGCGGGGCAGCTCA
ACACGCCGCACTCGCTGCTGGGCCTGCTGGCGCTGGACAAGCTGCGTGAG
CTCGGCTTTGGcgacgacgacgacgacgatgacgcacgCCTCCCGTAA
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protein sequence of Ggra8456.t1

>Ggra8456.t1 ID=Ggra8456.t1|Name=Ggra8456.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MCATAFAFATVSPLRRGVLGARTLCSRRAAPRASSRAPQPQPQPQPQPQP
QPQPQRQPPQAPAAATEFEIVRHERIFQRYQTVFQRDVRFPSGRTVSFDV
LGTQHSDFKSVLVLPFNRASRRATLLREYAPGRNAEALSFVGGMFDAARH
VDVAHAARAELSEEARLTGGKLLPLAARGVAADKYSLNEFFFFLALDCVA
DEAPPPRDDDEWISEVFDAPLRHVRRLIGAGQLNTPHSLLGLLALDKLRE
LGFGDDDDDDDARLP*
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mRNA from alignment at tig00000041_pilon:768667..769464+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8456.t1 ID=Ggra8456.t1|Name=Ggra8456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000041_pilon:768667..769464+ (Gracilaria gracilis GNS1m male)
ATGTGCGCCACCGCCTTCGCCTTCGCCACCGTCTCGCCGCTGCGCCGCGG
CGTGCTCGGCGCGCGCACGCTGTGCTCGCGCCGCGCTGCGCCGCGCGCCA
GTAGCCGCGCgccgcagccgcagccgcagccgcagccgcagccgcagccg
cagccgcagccgcagcGCCAACCGCCGCAGGCGCCGGCAGCGGCGACAGA
GTTCGAAATCGTTCGCCACGAGCGCATCTTCCAGCGCTACCAGACGGTGT
TCCAGCGCGACGTGCGCTTCCCGTCGGGGCGCACGGTGTCGTTCGACGTG
CTGGGCACGCAGCACAGTGACTTCAAGTCCGTGCTAGTGCTGCCGTTCAA
CCGCGCGTCGCGCCGCGCCACGCTGCTGCGCGAGTACGCGCCGGGGCGCA
ACGCCGAGGCGCTGTCATTCGTGGGCGGCATGTTCGACGCGGCGCGCCAC
GTCGACGTGGCGCACGCCGCGCGCGCAGAGCTCAGCGAGGAGGCGCGTCT
CACGGGCGGCAAGCTGCTGCCGCTGGCCGCCCGCGGCGTGGCGGCTGACA
AGTATAGCCTTAACGAGTTCTTCTTCTTCCTGGCGCTGGACTGCGTGGCG
GACGAGGCGCCGCCGCCGCGCGACGACGACGAGTGGATCAGTGAGGTGTT
CGACGCGCCGCTGCGCCACGTCAGACGCCTCATTGGCGCGGGGCAGCTCA
ACACGCCGCACTCGCTGCTGGGCCTGCTGGCGCTGGACAAGCTGCGTGAG
CTCGGCTTTGGcgacgacgacgacgacgatgacgcacgCCTCCCGTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:768667..769464+

>Ggra8456.t1 ID=Ggra8456.t1|Name=Ggra8456.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000041_pilon:768667..769464+ (Gracilaria gracilis GNS1m male)
ATGTGCGCCACCGCCTTCGCCTTCGCCACCGTCTCGCCGCTGCGCCGCGG
CGTGCTCGGCGCGCGCACGCTGTGCTCGCGCCGCGCTGCGCCGCGCGCCA
GTAGCCGCGCgccgcagccgcagccgcagccgcagccgcagccgcagccg
cagccgcagccgcagcGCCAACCGCCGCAGGCGCCGGCAGCGGCGACAGA
GTTCGAAATCGTTCGCCACGAGCGCATCTTCCAGCGCTACCAGACGGTGT
TCCAGCGCGACGTGCGCTTCCCGTCGGGGCGCACGGTGTCGTTCGACGTG
CTGGGCACGCAGCACAGTGACTTCAAGTCCGTGCTAGTGCTGCCGTTCAA
CCGCGCGTCGCGCCGCGCCACGCTGCTGCGCGAGTACGCGCCGGGGCGCA
ACGCCGAGGCGCTGTCATTCGTGGGCGGCATGTTCGACGCGGCGCGCCAC
GTCGACGTGGCGCACGCCGCGCGCGCAGAGCTCAGCGAGGAGGCGCGTCT
CACGGGCGGCAAGCTGCTGCCGCTGGCCGCCCGCGGCGTGGCGGCTGACA
AGTATAGCCTTAACGAGTTCTTCTTCTTCCTGGCGCTGGACTGCGTGGCG
GACGAGGCGCCGCCGCCGCGCGACGACGACGAGTGGATCAGTGAGGTGTT
CGACGCGCCGCTGCGCCACGTCAGACGCCTCATTGGCGCGGGGCAGCTCA
ACACGCCGCACTCGCTGCTGGGCCTGCTGGCGCTGGACAAGCTGCGTGAG
CTCGGCTTTGGcgacgacgacgacgacgatgacgcacgCCTCCCGTAA
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