Ggra8450.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8450.t1
Unique NameGgra8450.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:757152..758169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008861913.1
PFAMsPhyH
Max annot lvl2759|Eukaryota
Evalue6.38e-21
EggNOG OGs29IAQ@1|root,2RRHZ@2759|Eukaryota
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8450Ggra8450Gracilaria gracilis GNS1m malegenetig00000041_pilon 757152..758169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8450.t1Ggra8450.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 757152..758169 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8450.t1.start1Ggra8450.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 757152..757154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8450.t1.CDS1Ggra8450.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 757152..757641 +
Ggra8450.t1.CDS2Ggra8450.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 757780..757826 +
Ggra8450.t1.CDS3Ggra8450.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000041_pilon 757903..758169 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8450.t1.exon1Ggra8450.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 757152..757641 +
Ggra8450.t1.exon2Ggra8450.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 757780..757826 +
Ggra8450.t1.exon3Ggra8450.t1.exon3Gracilaria gracilis GNS1m maleexontig00000041_pilon 757903..758169 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8450.t1.intron1Ggra8450.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 757642..757779 +
Ggra8450.t1.intron2Ggra8450.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000041_pilon 757827..757902 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8450.t1.stop1Ggra8450.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 758167..758169 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8450.t1 ID=Ggra8450.t1|Name=Ggra8450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MQLTDDHKRRFIRDGYVQLPRVVPRAEVAALLAVTDRMYASKQYTLHDSN
KDILPHFAAACEQHATLTSLPRRTPMLSLCEQLLGAGNVALPARAQIAYR
PYDQRLARSGMSPADAICRHWYHVDGGDGKYARTASPFTLLVGVCLSAGQ
TVDDNRGQLNVWPASHVTLHQVLKQRIQAGLITGRNLFGVAKEKPDIGPA
KRVLMDVGDVVLAHHRLGHSGGVNLHHHVRKNLYYRVTHKRHDQLLPAVW
SASLWTEYDGLRHLVQQ*
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spliced messenger RNA

>Ggra8450.t1 ID=Ggra8450.t1|Name=Ggra8450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000041_pilon:757152..758169+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTCACGGACGACCACAAGCGCCGCTTCATCCGCGACGGCTACGT
GCAGCTGCCGCGCGTGGTACCGCGCGCGGAGGTGGCGGCGCTTCTAGCCG
TCACCGACCGCATGTACGCCAGCAAGCAGTACACGCTGCACGACTCCAAC
AAGGACATTCTGCCGCACTTCGCAGCCGCCTGCGAGCAGCACGCGACGCT
CACGTCGCTGCCTCGCCGCACGCCAATGCTGTCGCTGTGCGAGCAGCTGC
TGGGCGCGGGCAACGTCGCGCTCCCCGCGCGCGCGCAGATCGCGTACCGT
CCGTACGACCAGCGGCTGGCGCGCAGCGGAATGTCGCCCGCCGACGCTAT
CTGCCGCCATTGGTACCACGTCGACGGCGGCGATGGCAAGTATGCGCGCA
CGGCGTCACCGTTTACGTTGCTGGTGGGCGTGTGCCTGTCCGCTGGCCAG
ACCGTTGACGACAACCGCGGCCAACTCAACGTGTGGCCGGCCTCCCACGT
CACGCTGCATCAAGTGCTCAAGCAACGTATCCAGGCAGGTCTCATCACAG
GCCGCAACCTGTTCGGCGTCGCGAAAGAGAAACCAGACATCGGTCCAGCC
AAGCGTGTGCTCATGGACGTGGGCGATGTTGTCCTGGCACATCACCGCCT
GGGCCACTCTGGCGGCGTAAACCTCCACCATCACGTGCGCAAAAACCTCT
ACTACAGAGTCACTCACAAGCGTCACGATCAACTGTTGCCCGCCGTCTGG
AGTGCTTCGTTATGGACCGAGTACGACGGTCTGCGCCACCTTGTACAACA
GTAG
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protein sequence of Ggra8450.t1

>Ggra8450.t1 ID=Ggra8450.t1|Name=Ggra8450.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MQLTDDHKRRFIRDGYVQLPRVVPRAEVAALLAVTDRMYASKQYTLHDSN
KDILPHFAAACEQHATLTSLPRRTPMLSLCEQLLGAGNVALPARAQIAYR
PYDQRLARSGMSPADAICRHWYHVDGGDGKYARTASPFTLLVGVCLSAGQ
TVDDNRGQLNVWPASHVTLHQVLKQRIQAGLITGRNLFGVAKEKPDIGPA
KRVLMDVGDVVLAHHRLGHSGGVNLHHHVRKNLYYRVTHKRHDQLLPAVW
SASLWTEYDGLRHLVQQ*
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mRNA from alignment at tig00000041_pilon:757152..758169+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8450.t1 ID=Ggra8450.t1|Name=Ggra8450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1018bp|location=Sequence derived from alignment at tig00000041_pilon:757152..758169+ (Gracilaria gracilis GNS1m male)
ATGCAGCTCACGGACGACCACAAGCGCCGCTTCATCCGCGACGGCTACGT
GCAGCTGCCGCGCGTGGTACCGCGCGCGGAGGTGGCGGCGCTTCTAGCCG
TCACCGACCGCATGTACGCCAGCAAGCAGTACACGCTGCACGACTCCAAC
AAGGACATTCTGCCGCACTTCGCAGCCGCCTGCGAGCAGCACGCGACGCT
CACGTCGCTGCCTCGCCGCACGCCAATGCTGTCGCTGTGCGAGCAGCTGC
TGGGCGCGGGCAACGTCGCGCTCCCCGCGCGCGCGCAGATCGCGTACCGT
CCGTACGACCAGCGGCTGGCGCGCAGCGGAATGTCGCCCGCCGACGCTAT
CTGCCGCCATTGGTACCACGTCGACGGCGGCGATGGCAAGTATGCGCGCA
CGGCGTCACCGTTTACGTTGCTGGTGGGCGTGTGCCTGTCCGCTGGCCAG
ACCGTTGACGACAACCGCGGCCAACTCAACGTGTGGCCGGGTACGTGAGA
GCTCTTCTTTGCGCGATTAATTGACGTGCGGCAACTCACTGCTAATATTT
TACAGCTCGCTGACAACAATTCACCCTCTTCGTCATCTTGGCACCGTTCC
GCTTTAACACCCGTGCGCCACTTGCCAGCCTCCCACGTCACGCTGCATCA
AGTGCTCAAGCAACGTATCCAGGCAGTAAGTTGTGCCACAAACTGCTGCT
TTCTACCCTTGGTAGCATCTGACAATGCGTTCACTTTCCAAACTTATGCA
GGGTCTCATCACAGGCCGCAACCTGTTCGGCGTCGCGAAAGAGAAACCAG
ACATCGGTCCAGCCAAGCGTGTGCTCATGGACGTGGGCGATGTTGTCCTG
GCACATCACCGCCTGGGCCACTCTGGCGGCGTAAACCTCCACCATCACGT
GCGCAAAAACCTCTACTACAGAGTCACTCACAAGCGTCACGATCAACTGT
TGCCCGCCGTCTGGAGTGCTTCGTTATGGACCGAGTACGACGGTCTGCGC
CACCTTGTACAACAGTAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:757152..758169+

>Ggra8450.t1 ID=Ggra8450.t1|Name=Ggra8450.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000041_pilon:757152..758169+ (Gracilaria gracilis GNS1m male)
ATGCAGCTCACGGACGACCACAAGCGCCGCTTCATCCGCGACGGCTACGT
GCAGCTGCCGCGCGTGGTACCGCGCGCGGAGGTGGCGGCGCTTCTAGCCG
TCACCGACCGCATGTACGCCAGCAAGCAGTACACGCTGCACGACTCCAAC
AAGGACATTCTGCCGCACTTCGCAGCCGCCTGCGAGCAGCACGCGACGCT
CACGTCGCTGCCTCGCCGCACGCCAATGCTGTCGCTGTGCGAGCAGCTGC
TGGGCGCGGGCAACGTCGCGCTCCCCGCGCGCGCGCAGATCGCGTACCGT
CCGTACGACCAGCGGCTGGCGCGCAGCGGAATGTCGCCCGCCGACGCTAT
CTGCCGCCATTGGTACCACGTCGACGGCGGCGATGGCAAGTATGCGCGCA
CGGCGTCACCGTTTACGTTGCTGGTGGGCGTGTGCCTGTCCGCTGGCCAG
ACCGTTGACGACAACCGCGGCCAACTCAACGTGTGGCCGGCCTCCCACGT
CACGCTGCATCAAGTGCTCAAGCAACGTATCCAGGCAGGTCTCATCACAG
GCCGCAACCTGTTCGGCGTCGCGAAAGAGAAACCAGACATCGGTCCAGCC
AAGCGTGTGCTCATGGACGTGGGCGATGTTGTCCTGGCACATCACCGCCT
GGGCCACTCTGGCGGCGTAAACCTCCACCATCACGTGCGCAAAAACCTCT
ACTACAGAGTCACTCACAAGCGTCACGATCAACTGTTGCCCGCCGTCTGG
AGTGCTTCGTTATGGACCGAGTACGACGGTCTGCGCCACCTTGTACAACA
GTAG
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