Ggra8445.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8445.t1
Unique NameGgra8445.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:735561..736802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD40509
Max annot lvl2759|Eukaryota
Evalue1.81e-06
EggNOG OGs2E05X@1|root,2S7MF@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8445Ggra8445Gracilaria gracilis GNS1m malegenetig00000041_pilon 735561..736802 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8445.t1.start1Ggra8445.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 735561..735563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8445.t1.CDS1Ggra8445.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 735561..736802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8445.t1.exon1Ggra8445.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 735561..736802 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8445.t1.stop1Ggra8445.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 736800..736802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8445.t1Ggra8445.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 735561..736802 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8445.t1 ID=Ggra8445.t1|Name=Ggra8445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MANNNASFIAPLTTFLPSTSTKATPTSLRTPTYHVRVLPSRSTRVSPSCA
WEQQLLPDESSAQKLHNLHTASTTTITTLAPHTVTDSHLYSADHNSDLAI
ALPFDSRDERNLLLDTLSLTHFLPPQSPIPPRSAAIITASVPSSLRAFLG
LDSSACNTLAAHILSDGRVNRAVALRQTLITCGVKCLACVVSEAEGMGDT
LPVEAVAFLTWMDGDRQVMEVQLSAAVAVALAAVCETPCYVKRTLVQAAG
VAVRDIMDPDLVYEQPSTPATQQTEPRLEASRLLADDVLNMSQQALLQTV
RRCGIGARSDDSREQLFKRLLPNMCEVQRREVAIELAAEQGRFDLAAELQ
KKRSQRGELFARMRDMERSGKLSEAVSIAERLRERAADMQDVSLEPGTYD
KFLDRDEWYRPTR*
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spliced messenger RNA

>Ggra8445.t1 ID=Ggra8445.t1|Name=Ggra8445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000041_pilon:735561..736802+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAACAACAACGCTTCCTTCATCGCCCCGCTCACCACCTTTTTGCC
TTCCACATCAACAAAAGCCACTCCCACAAGCCTGCGTACCCCAACGTACC
ACGTACGAGTACTCCCGAGCCGCAGCACGCGCGTCTCCCCCAGCTGTGCC
TGGGAACAGCAGCTGCTACCAGATGAGTCAAGCGCCCAAAAGCTACACAA
TCTGCACACCGCATCAACCACAACCATCACCACGCTGGCGCCGCACACGG
TAACAGACAGCCATCTCTACTCCGCCGATCACAACTCCGATCTCGCCATC
GCCCTGCCGTTCGACTCCCGCGACGAGCGAAATCTGCTCCTGGACACGCT
ATCGCTCACTCACTTCCTGCCTCCACAGTCGCCCATCCCGCCGCGCTCTG
CCGCCATCATCACCGCGTCTGTGCCGTCGTCGCTGCGCGCCTTTCTCGGC
CTGGACTCGTCTGCGTGCAACACGTTGGCGGCGCATATCCTGAGCGACGG
GCGAGTCAATCGTGCCGTTGCACTTCGACAGACGTTGATAACTTGCGGCG
TCAAATGTCTGGCGTGCGTAGTGTCCGAGGCGGAGGGAATGGGCGATACA
CTTCCTGTGGAAGCTGTGGCGTTTCTCACGTGGATGGATGGCGATCGCCA
GGTCATGGAAGTACAGCTTTCGGCCGCGGTCGCCGTCGCGTTGGCTGCCG
TATGTGAGACGCCATGCTACGTGAAAAGGACGCTTGTACAGGCTGCGGGC
GTGGCCGTACGAGACATAATGGATCCGGACCTCGTTTACGAACAGCCGTC
GACACCGGCAACGCAGCAAACGGAGCCGCGGTTGGAAGCGAGTCGGTTGC
TGGCTGACGACGTGCTGAACATGTCGCAACAAGCGTTGTTACAAACCGTG
CGTCGATGTGGAATCGGAGCGCGAAGTGACGACAGTCGCGAGCAACTGTT
CAAGCGACTGCTGCCGAACATGTGCGAGGTGCAACGGCGAGAAGTGGCCA
TCGAGCTTGCTGCCGAACAGGGACGCTTCGACCTGGCGGCCGAGCTGCAG
AAGAAGCGCTCGCAAAGAGGCGAGCTGTTCGCGCGTATGCGAGACATGGA
ACGCAGTGGAAAGCTGTCCGAAGCGGTGAGTATCGCGGAGCGGCTTCGAG
AGCGCGCGGCCGACATGCAGGACGTGAGCCTGGAGCCGGGCACTTACGAC
AAGTTCTTGGACCGCGATGAATGGTATCGACCAACAAGATGA
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protein sequence of Ggra8445.t1

>Ggra8445.t1 ID=Ggra8445.t1|Name=Ggra8445.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MANNNASFIAPLTTFLPSTSTKATPTSLRTPTYHVRVLPSRSTRVSPSCA
WEQQLLPDESSAQKLHNLHTASTTTITTLAPHTVTDSHLYSADHNSDLAI
ALPFDSRDERNLLLDTLSLTHFLPPQSPIPPRSAAIITASVPSSLRAFLG
LDSSACNTLAAHILSDGRVNRAVALRQTLITCGVKCLACVVSEAEGMGDT
LPVEAVAFLTWMDGDRQVMEVQLSAAVAVALAAVCETPCYVKRTLVQAAG
VAVRDIMDPDLVYEQPSTPATQQTEPRLEASRLLADDVLNMSQQALLQTV
RRCGIGARSDDSREQLFKRLLPNMCEVQRREVAIELAAEQGRFDLAAELQ
KKRSQRGELFARMRDMERSGKLSEAVSIAERLRERAADMQDVSLEPGTYD
KFLDRDEWYRPTR*
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mRNA from alignment at tig00000041_pilon:735561..736802+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8445.t1 ID=Ggra8445.t1|Name=Ggra8445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000041_pilon:735561..736802+ (Gracilaria gracilis GNS1m male)
ATGGCGAACAACAACGCTTCCTTCATCGCCCCGCTCACCACCTTTTTGCC
TTCCACATCAACAAAAGCCACTCCCACAAGCCTGCGTACCCCAACGTACC
ACGTACGAGTACTCCCGAGCCGCAGCACGCGCGTCTCCCCCAGCTGTGCC
TGGGAACAGCAGCTGCTACCAGATGAGTCAAGCGCCCAAAAGCTACACAA
TCTGCACACCGCATCAACCACAACCATCACCACGCTGGCGCCGCACACGG
TAACAGACAGCCATCTCTACTCCGCCGATCACAACTCCGATCTCGCCATC
GCCCTGCCGTTCGACTCCCGCGACGAGCGAAATCTGCTCCTGGACACGCT
ATCGCTCACTCACTTCCTGCCTCCACAGTCGCCCATCCCGCCGCGCTCTG
CCGCCATCATCACCGCGTCTGTGCCGTCGTCGCTGCGCGCCTTTCTCGGC
CTGGACTCGTCTGCGTGCAACACGTTGGCGGCGCATATCCTGAGCGACGG
GCGAGTCAATCGTGCCGTTGCACTTCGACAGACGTTGATAACTTGCGGCG
TCAAATGTCTGGCGTGCGTAGTGTCCGAGGCGGAGGGAATGGGCGATACA
CTTCCTGTGGAAGCTGTGGCGTTTCTCACGTGGATGGATGGCGATCGCCA
GGTCATGGAAGTACAGCTTTCGGCCGCGGTCGCCGTCGCGTTGGCTGCCG
TATGTGAGACGCCATGCTACGTGAAAAGGACGCTTGTACAGGCTGCGGGC
GTGGCCGTACGAGACATAATGGATCCGGACCTCGTTTACGAACAGCCGTC
GACACCGGCAACGCAGCAAACGGAGCCGCGGTTGGAAGCGAGTCGGTTGC
TGGCTGACGACGTGCTGAACATGTCGCAACAAGCGTTGTTACAAACCGTG
CGTCGATGTGGAATCGGAGCGCGAAGTGACGACAGTCGCGAGCAACTGTT
CAAGCGACTGCTGCCGAACATGTGCGAGGTGCAACGGCGAGAAGTGGCCA
TCGAGCTTGCTGCCGAACAGGGACGCTTCGACCTGGCGGCCGAGCTGCAG
AAGAAGCGCTCGCAAAGAGGCGAGCTGTTCGCGCGTATGCGAGACATGGA
ACGCAGTGGAAAGCTGTCCGAAGCGGTGAGTATCGCGGAGCGGCTTCGAG
AGCGCGCGGCCGACATGCAGGACGTGAGCCTGGAGCCGGGCACTTACGAC
AAGTTCTTGGACCGCGATGAATGGTATCGACCAACAAGATGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:735561..736802+

>Ggra8445.t1 ID=Ggra8445.t1|Name=Ggra8445.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000041_pilon:735561..736802+ (Gracilaria gracilis GNS1m male)
ATGGCGAACAACAACGCTTCCTTCATCGCCCCGCTCACCACCTTTTTGCC
TTCCACATCAACAAAAGCCACTCCCACAAGCCTGCGTACCCCAACGTACC
ACGTACGAGTACTCCCGAGCCGCAGCACGCGCGTCTCCCCCAGCTGTGCC
TGGGAACAGCAGCTGCTACCAGATGAGTCAAGCGCCCAAAAGCTACACAA
TCTGCACACCGCATCAACCACAACCATCACCACGCTGGCGCCGCACACGG
TAACAGACAGCCATCTCTACTCCGCCGATCACAACTCCGATCTCGCCATC
GCCCTGCCGTTCGACTCCCGCGACGAGCGAAATCTGCTCCTGGACACGCT
ATCGCTCACTCACTTCCTGCCTCCACAGTCGCCCATCCCGCCGCGCTCTG
CCGCCATCATCACCGCGTCTGTGCCGTCGTCGCTGCGCGCCTTTCTCGGC
CTGGACTCGTCTGCGTGCAACACGTTGGCGGCGCATATCCTGAGCGACGG
GCGAGTCAATCGTGCCGTTGCACTTCGACAGACGTTGATAACTTGCGGCG
TCAAATGTCTGGCGTGCGTAGTGTCCGAGGCGGAGGGAATGGGCGATACA
CTTCCTGTGGAAGCTGTGGCGTTTCTCACGTGGATGGATGGCGATCGCCA
GGTCATGGAAGTACAGCTTTCGGCCGCGGTCGCCGTCGCGTTGGCTGCCG
TATGTGAGACGCCATGCTACGTGAAAAGGACGCTTGTACAGGCTGCGGGC
GTGGCCGTACGAGACATAATGGATCCGGACCTCGTTTACGAACAGCCGTC
GACACCGGCAACGCAGCAAACGGAGCCGCGGTTGGAAGCGAGTCGGTTGC
TGGCTGACGACGTGCTGAACATGTCGCAACAAGCGTTGTTACAAACCGTG
CGTCGATGTGGAATCGGAGCGCGAAGTGACGACAGTCGCGAGCAACTGTT
CAAGCGACTGCTGCCGAACATGTGCGAGGTGCAACGGCGAGAAGTGGCCA
TCGAGCTTGCTGCCGAACAGGGACGCTTCGACCTGGCGGCCGAGCTGCAG
AAGAAGCGCTCGCAAAGAGGCGAGCTGTTCGCGCGTATGCGAGACATGGA
ACGCAGTGGAAAGCTGTCCGAAGCGGTGAGTATCGCGGAGCGGCTTCGAG
AGCGCGCGGCCGACATGCAGGACGTGAGCCTGGAGCCGGGCACTTACGAC
AAGTTCTTGGACCGCGATGAATGGTATCGACCAACAAGATGA
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