Ggra8439.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8439.t1
Unique NameGgra8439.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:716718..717143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog869210.Marky_0638
PFAMsFUN14
Max annot lvl1297|Deinococcus-Thermus
Evalue6.09e-15
EggNOG OGsCOG2383@1|root,COG2383@2|Bacteria,1WK4Z@1297|Deinococcus-Thermus
DescriptionPFAM FUN14 family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8439Ggra8439Gracilaria gracilis GNS1m malegenetig00000041_pilon 716718..717143 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8439.t1.start1Ggra8439.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 716718..716720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8439.t1.CDS1Ggra8439.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 716718..717143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8439.t1.exon1Ggra8439.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 716718..717143 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8439.t1.stop1Ggra8439.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 717141..717143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8439.t1Ggra8439.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 716718..717143 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8439.t1 ID=Ggra8439.t1|Name=Ggra8439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=142bp
MSRFLLCFQPVGAPPVAALCARTRTRARRFLLTADASDFIRNTLTSATTN
QLTVGSVLGFATGYATKRVGQLLLVLIGCELIALQLMAQRAWIVVNWQLI
AADLSPHVERDRFDRIMEAIKLKMPFAGSFTASFYAGFRWT*
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spliced messenger RNA

>Ggra8439.t1 ID=Ggra8439.t1|Name=Ggra8439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00000041_pilon:716718..717143+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGATTTCTTCTCTGCTTCCAGCCCGTAGGCGCGCCGCCTGTTGC
cgcgctctgcgcgcgcacgcgcacgcgcgctcgccgcTTCCTTCTCACCG
CCGATGCGAGCGATTTCATTCGGAACACTTTGACCAGTGCCACCACGAAC
CAGCTCACGGTTGGGTCCGTGCTTGGCTTCGCTACAGGATACGCTACGAA
GCGTGTTGGACAGCTATTGCTTGTGCTCATTGGATGCGAGCTTATTGCGT
TGCAGCTCATGGCGCAACGTGCTTGGATCGTCGTCAATTGGCAGCTTATT
GCTGCTGATTTGTCACCGCATGTTGAGAGAGATCGATTTGATCGCATTAT
GGAGGCTATAAAGCTTAAGATGCCCTTCGCTGGCTCCTTTACTGCTTCCT
TCTATGCCGGCTTTCGTTGGACATGA
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protein sequence of Ggra8439.t1

>Ggra8439.t1 ID=Ggra8439.t1|Name=Ggra8439.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=142bp
MSRFLLCFQPVGAPPVAALCARTRTRARRFLLTADASDFIRNTLTSATTN
QLTVGSVLGFATGYATKRVGQLLLVLIGCELIALQLMAQRAWIVVNWQLI
AADLSPHVERDRFDRIMEAIKLKMPFAGSFTASFYAGFRWT*
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mRNA from alignment at tig00000041_pilon:716718..717143+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8439.t1 ID=Ggra8439.t1|Name=Ggra8439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00000041_pilon:716718..717143+ (Gracilaria gracilis GNS1m male)
ATGTCGCGATTTCTTCTCTGCTTCCAGCCCGTAGGCGCGCCGCCTGTTGC
cgcgctctgcgcgcgcacgcgcacgcgcgctcgccgcTTCCTTCTCACCG
CCGATGCGAGCGATTTCATTCGGAACACTTTGACCAGTGCCACCACGAAC
CAGCTCACGGTTGGGTCCGTGCTTGGCTTCGCTACAGGATACGCTACGAA
GCGTGTTGGACAGCTATTGCTTGTGCTCATTGGATGCGAGCTTATTGCGT
TGCAGCTCATGGCGCAACGTGCTTGGATCGTCGTCAATTGGCAGCTTATT
GCTGCTGATTTGTCACCGCATGTTGAGAGAGATCGATTTGATCGCATTAT
GGAGGCTATAAAGCTTAAGATGCCCTTCGCTGGCTCCTTTACTGCTTCCT
TCTATGCCGGCTTTCGTTGGACATGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:716718..717143+

>Ggra8439.t1 ID=Ggra8439.t1|Name=Ggra8439.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=426bp|location=Sequence derived from alignment at tig00000041_pilon:716718..717143+ (Gracilaria gracilis GNS1m male)
ATGTCGCGATTTCTTCTCTGCTTCCAGCCCGTAGGCGCGCCGCCTGTTGC
cgcgctctgcgcgcgcacgcgcacgcgcgctcgccgcTTCCTTCTCACCG
CCGATGCGAGCGATTTCATTCGGAACACTTTGACCAGTGCCACCACGAAC
CAGCTCACGGTTGGGTCCGTGCTTGGCTTCGCTACAGGATACGCTACGAA
GCGTGTTGGACAGCTATTGCTTGTGCTCATTGGATGCGAGCTTATTGCGT
TGCAGCTCATGGCGCAACGTGCTTGGATCGTCGTCAATTGGCAGCTTATT
GCTGCTGATTTGTCACCGCATGTTGAGAGAGATCGATTTGATCGCATTAT
GGAGGCTATAAAGCTTAAGATGCCCTTCGCTGGCTCCTTTACTGCTTCCT
TCTATGCCGGCTTTCGTTGGACATGA
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