Ggra8430.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8430.t1
Unique Name	Ggra8430.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	677

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:605950..607980 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8430	Ggra8430	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 605950..607980 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8430.t1.start1	Ggra8430.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 605950..605952 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8430.t1.CDS1	Ggra8430.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 605950..607980 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8430.t1.exon1	Ggra8430.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 605950..607980 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8430.t1.stop1	Ggra8430.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 607978..607980 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8430.t1	Ggra8430.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 605950..607980 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:605950..607980+
coding sequence from alignment at tig00000041_pilon:605950..607980+

mRNA sequence

>Ggra8430.t1 ID=Ggra8430.t1|Name=Ggra8430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=677bp
MRSEEDDSPGVAPRRRWSRRQTQRSAPLSDHSSSASASDNPKSFGAMSAV
RRLLTGQDSSAKMRVARSVKHAPKAAPPPCTVCAENELARVTPEEQLLRL
RQLSQRCAPDAVDRLEMVMHGDYHRLLRLFRIACDVQLIVGVHERQDSAM
AHLYAERLNAMAITLYGRDITVSVVSNGAGALFVCRMHNIISLLWEGIQF
DVTESDDTPIDLIMKAVIESSLDADLDDLQGILSSIRFARPAEEADAIDD
LNAGGLDMPSLNLLRPEFFTTRVLCMMLKTDIYEQGFYRRYVHVDRLGTT
FTAVREGETAMLTKINVLPDAMSRPVKNGEDIIGEDLFMTRRKGRKDKFR
LSCSVSVNVWEEYETPEWFGYIHPPPNADAMRPANLQELRDRLEAYGVPD
GLEVCRIVYHCLGHKSKNANVKVDTLSAARGYFMYMKNFMKHGTTGSATN
HIIEGDELAVVYDGIAFRVSAPQTEIRHNSLFMSLLISDERERNGKNVPK
RSIIRRMCSTSEVVLSLCREITYLNAEYDEDGGTLYSASAEEENLSEAWT
TCVALYVCDGYGCLEGCFNCAIENRRGAIVDESSVFMNDVQVPVVFDKLY
RKSTLAEELSAMSDSRGATYPGAFISGRDQCNERTYLAGERHVFVAGGLL
RYLQRELRIDWGGRKEERSEVSVIEL*

spliced messenger RNA

>Ggra8430.t1 ID=Ggra8430.t1|Name=Ggra8430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000041_pilon:605950..607980+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGAGTGAAGAAGACGACTCTCCTGGCGTCGCGCCGCGTCGTCGCTG
GTCGCGAAGACAAACGCAGCGCTCGGCGCCGCTCTCCGACCATAGCAGTT
CCGCGTCCGCTTCGGACAACCCCAAGTCCTTTGGTGCCATGTCTGCTGTG
CGCCGTTTACTTACCGGCCAGGACTCGTCCGCCAAGATGCGCGTGGCGCG
CTCGGTCAAACACGCCCCAAAGGCCGCGCCGCCGCCATGCACCGTTTGCG
CCGAGAATGAGTTGGCCAGGGTTACCCCCGAGGAGCAGTTGCTCAGGTTG
CGTCAACTCTCCCAACGCTGTGCGCCGGATGCCGTTGATAGGTTGGAAAT
GGTTATGCATGGTGATTACCACCGCCTACTACGACTGTTCCGCATCGCGT
GTGACGTGCAGCTCATTGTTGGCGTGCACGAGCGTCAGGACTCCGCGATG
GCACATTTGTACGCCGAACGTCTCAACGCCATGGCCATCACGCTGTACGG
TCGTGATATCACCGTCTCCGTGGTGTCCAACGGTGCAGGTGCGCTGTTTG
TATGCCGCATGCACAACATCATCTCCTTGCTATGGGAGGGGATTCAGTTT
GACGTCACCGAGTCCGATGACACCCCCATTGACCTCATCATGAAGGCCGT
CATCGAGAGCTCTCTCGACGCCGATCTGGACGACCTGCAGGGCATTCTTT
CTAGCATTCGCTTTGCTCGACCTGCTGAAGAGGCCGACGCCATTGATGAT
CTCAACGCCGGTGGTCTGGACATGCCGTCGCTCAACCTGTTACGCCCAGA
GTTTTTCACCACGCGCGTGTTGTGCATGATGCTCAAGACGGACATTTATG
AGCAGGGTTTCTACCGTCGATACGTGCATGTGGACCGCTTGGGCACGACC
TTCACCGCTGTGCGAGAAGGTGAGACGGCTATGTTGACCAAGATAAACGT
GTTGCCAGACGCCATGAGTAGACCCGTCAAGAATGGTGAAGATATCATTG
GAGAGGATCTATTCATGACTCGCAGAAAGGGCAGGAAGGACAAATTCCGC
TTGAGCTGTTCGGTTTCCGTGAATGTATGGGAAGAATATGAGACGCCTGA
ATGGTTTGGTTACATTCACCCTCCGCCAAACGCGGATGCGATGAGACCAG
CTAATCTACAAGAGCTCCGTGACCGCTTGGAGGCTTACGGCGTTCCCGAT
GGGCTTGAAGTTTGCCGAATTGTTTACCATTGTTTGGGTCATAAATCGAA
AAATGCGAACGTGAAGGTGGATACGCTTTCTGCTGCACGTGGTTATTTCA
TGTACATGAAAAACTTTATGAAGCATGGTACTACTGGATCGGCTACGAAT
CATATCATTGAAGGAGATGAGTTGGCCGTTGTTTACGATGGAATCGCGTT
TCGAGTTAGTGCACCTCAGACTGAGATTCGACATAATAGCTTGTTCATGA
GCCTGCTTATTAGCGATGAACGTGAGAGAAATGGAAAGAACGTTCCCAAA
CGATCGATTATTCGGAGAATGTGCAGTACGTCGGAAGTGGTACTTTCGCT
GTGTCGAGAAATTACGTACTTGAATGCCGAATATGACGAAGACGGTGGGA
CGCTTTACTCGGCGTCTGCGGAAGAAGAAAACCTTTCGGAAGCTTGGACT
ACTTGTGTGGCACTGTATGTGTGTGACGGGTACGGCTGTCTGGAAGGGTG
CTTCAACTGCGCGATTGAGAATCGGAGAGGTGCCATTGTTGATGAAAGTT
CGGTGTTCATGAATGACGTTCAGGTGCCAGTGGTGTTCGATAAGTTGTAT
CGGAAAAGCACGCTGGCTGAGGAACTGTCGGCTATGAGTGATTCCAGGGG
TGCTACTTACCCCGGGGCGTTTATTTCGGGGAGGGACCAGTGTAATGAGC
GAACTTACCTTGCTGGAGAGAGACATGTGTTTGTGGCGGGCGGGTTGCTG
AGGTACTTGCAGAGGGAGCTGAGGATTGACTGGGGCGGCAGGAAGGAGGA
GAGAAGCGAGGTTAGCGTAATTGAGCTTTGA

protein sequence of Ggra8430.t1

>Ggra8430.t1 ID=Ggra8430.t1|Name=Ggra8430.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=677bp
MRSEEDDSPGVAPRRRWSRRQTQRSAPLSDHSSSASASDNPKSFGAMSAV
RRLLTGQDSSAKMRVARSVKHAPKAAPPPCTVCAENELARVTPEEQLLRL
RQLSQRCAPDAVDRLEMVMHGDYHRLLRLFRIACDVQLIVGVHERQDSAM
AHLYAERLNAMAITLYGRDITVSVVSNGAGALFVCRMHNIISLLWEGIQF
DVTESDDTPIDLIMKAVIESSLDADLDDLQGILSSIRFARPAEEADAIDD
LNAGGLDMPSLNLLRPEFFTTRVLCMMLKTDIYEQGFYRRYVHVDRLGTT
FTAVREGETAMLTKINVLPDAMSRPVKNGEDIIGEDLFMTRRKGRKDKFR
LSCSVSVNVWEEYETPEWFGYIHPPPNADAMRPANLQELRDRLEAYGVPD
GLEVCRIVYHCLGHKSKNANVKVDTLSAARGYFMYMKNFMKHGTTGSATN
HIIEGDELAVVYDGIAFRVSAPQTEIRHNSLFMSLLISDERERNGKNVPK
RSIIRRMCSTSEVVLSLCREITYLNAEYDEDGGTLYSASAEEENLSEAWT
TCVALYVCDGYGCLEGCFNCAIENRRGAIVDESSVFMNDVQVPVVFDKLY
RKSTLAEELSAMSDSRGATYPGAFISGRDQCNERTYLAGERHVFVAGGLL
RYLQRELRIDWGGRKEERSEVSVIEL*

mRNA from alignment at tig00000041_pilon:605950..607980+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8430.t1 ID=Ggra8430.t1|Name=Ggra8430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000041_pilon:605950..607980+ (Gracilaria gracilis GNS1m male)
ATGCGGAGTGAAGAAGACGACTCTCCTGGCGTCGCGCCGCGTCGTCGCTG
GTCGCGAAGACAAACGCAGCGCTCGGCGCCGCTCTCCGACCATAGCAGTT
CCGCGTCCGCTTCGGACAACCCCAAGTCCTTTGGTGCCATGTCTGCTGTG
CGCCGTTTACTTACCGGCCAGGACTCGTCCGCCAAGATGCGCGTGGCGCG
CTCGGTCAAACACGCCCCAAAGGCCGCGCCGCCGCCATGCACCGTTTGCG
CCGAGAATGAGTTGGCCAGGGTTACCCCCGAGGAGCAGTTGCTCAGGTTG
CGTCAACTCTCCCAACGCTGTGCGCCGGATGCCGTTGATAGGTTGGAAAT
GGTTATGCATGGTGATTACCACCGCCTACTACGACTGTTCCGCATCGCGT
GTGACGTGCAGCTCATTGTTGGCGTGCACGAGCGTCAGGACTCCGCGATG
GCACATTTGTACGCCGAACGTCTCAACGCCATGGCCATCACGCTGTACGG
TCGTGATATCACCGTCTCCGTGGTGTCCAACGGTGCAGGTGCGCTGTTTG
TATGCCGCATGCACAACATCATCTCCTTGCTATGGGAGGGGATTCAGTTT
GACGTCACCGAGTCCGATGACACCCCCATTGACCTCATCATGAAGGCCGT
CATCGAGAGCTCTCTCGACGCCGATCTGGACGACCTGCAGGGCATTCTTT
CTAGCATTCGCTTTGCTCGACCTGCTGAAGAGGCCGACGCCATTGATGAT
CTCAACGCCGGTGGTCTGGACATGCCGTCGCTCAACCTGTTACGCCCAGA
GTTTTTCACCACGCGCGTGTTGTGCATGATGCTCAAGACGGACATTTATG
AGCAGGGTTTCTACCGTCGATACGTGCATGTGGACCGCTTGGGCACGACC
TTCACCGCTGTGCGAGAAGGTGAGACGGCTATGTTGACCAAGATAAACGT
GTTGCCAGACGCCATGAGTAGACCCGTCAAGAATGGTGAAGATATCATTG
GAGAGGATCTATTCATGACTCGCAGAAAGGGCAGGAAGGACAAATTCCGC
TTGAGCTGTTCGGTTTCCGTGAATGTATGGGAAGAATATGAGACGCCTGA
ATGGTTTGGTTACATTCACCCTCCGCCAAACGCGGATGCGATGAGACCAG
CTAATCTACAAGAGCTCCGTGACCGCTTGGAGGCTTACGGCGTTCCCGAT
GGGCTTGAAGTTTGCCGAATTGTTTACCATTGTTTGGGTCATAAATCGAA
AAATGCGAACGTGAAGGTGGATACGCTTTCTGCTGCACGTGGTTATTTCA
TGTACATGAAAAACTTTATGAAGCATGGTACTACTGGATCGGCTACGAAT
CATATCATTGAAGGAGATGAGTTGGCCGTTGTTTACGATGGAATCGCGTT
TCGAGTTAGTGCACCTCAGACTGAGATTCGACATAATAGCTTGTTCATGA
GCCTGCTTATTAGCGATGAACGTGAGAGAAATGGAAAGAACGTTCCCAAA
CGATCGATTATTCGGAGAATGTGCAGTACGTCGGAAGTGGTACTTTCGCT
GTGTCGAGAAATTACGTACTTGAATGCCGAATATGACGAAGACGGTGGGA
CGCTTTACTCGGCGTCTGCGGAAGAAGAAAACCTTTCGGAAGCTTGGACT
ACTTGTGTGGCACTGTATGTGTGTGACGGGTACGGCTGTCTGGAAGGGTG
CTTCAACTGCGCGATTGAGAATCGGAGAGGTGCCATTGTTGATGAAAGTT
CGGTGTTCATGAATGACGTTCAGGTGCCAGTGGTGTTCGATAAGTTGTAT
CGGAAAAGCACGCTGGCTGAGGAACTGTCGGCTATGAGTGATTCCAGGGG
TGCTACTTACCCCGGGGCGTTTATTTCGGGGAGGGACCAGTGTAATGAGC
GAACTTACCTTGCTGGAGAGAGACATGTGTTTGTGGCGGGCGGGTTGCTG
AGGTACTTGCAGAGGGAGCTGAGGATTGACTGGGGCGGCAGGAAGGAGGA
GAGAAGCGAGGTTAGCGTAATTGAGCTTTGA

Coding sequence (CDS) from alignment at tig00000041_pilon:605950..607980+

>Ggra8430.t1 ID=Ggra8430.t1|Name=Ggra8430.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2031bp|location=Sequence derived from alignment at tig00000041_pilon:605950..607980+ (Gracilaria gracilis GNS1m male)
ATGCGGAGTGAAGAAGACGACTCTCCTGGCGTCGCGCCGCGTCGTCGCTG
GTCGCGAAGACAAACGCAGCGCTCGGCGCCGCTCTCCGACCATAGCAGTT
CCGCGTCCGCTTCGGACAACCCCAAGTCCTTTGGTGCCATGTCTGCTGTG
CGCCGTTTACTTACCGGCCAGGACTCGTCCGCCAAGATGCGCGTGGCGCG
CTCGGTCAAACACGCCCCAAAGGCCGCGCCGCCGCCATGCACCGTTTGCG
CCGAGAATGAGTTGGCCAGGGTTACCCCCGAGGAGCAGTTGCTCAGGTTG
CGTCAACTCTCCCAACGCTGTGCGCCGGATGCCGTTGATAGGTTGGAAAT
GGTTATGCATGGTGATTACCACCGCCTACTACGACTGTTCCGCATCGCGT
GTGACGTGCAGCTCATTGTTGGCGTGCACGAGCGTCAGGACTCCGCGATG
GCACATTTGTACGCCGAACGTCTCAACGCCATGGCCATCACGCTGTACGG
TCGTGATATCACCGTCTCCGTGGTGTCCAACGGTGCAGGTGCGCTGTTTG
TATGCCGCATGCACAACATCATCTCCTTGCTATGGGAGGGGATTCAGTTT
GACGTCACCGAGTCCGATGACACCCCCATTGACCTCATCATGAAGGCCGT
CATCGAGAGCTCTCTCGACGCCGATCTGGACGACCTGCAGGGCATTCTTT
CTAGCATTCGCTTTGCTCGACCTGCTGAAGAGGCCGACGCCATTGATGAT
CTCAACGCCGGTGGTCTGGACATGCCGTCGCTCAACCTGTTACGCCCAGA
GTTTTTCACCACGCGCGTGTTGTGCATGATGCTCAAGACGGACATTTATG
AGCAGGGTTTCTACCGTCGATACGTGCATGTGGACCGCTTGGGCACGACC
TTCACCGCTGTGCGAGAAGGTGAGACGGCTATGTTGACCAAGATAAACGT
GTTGCCAGACGCCATGAGTAGACCCGTCAAGAATGGTGAAGATATCATTG
GAGAGGATCTATTCATGACTCGCAGAAAGGGCAGGAAGGACAAATTCCGC
TTGAGCTGTTCGGTTTCCGTGAATGTATGGGAAGAATATGAGACGCCTGA
ATGGTTTGGTTACATTCACCCTCCGCCAAACGCGGATGCGATGAGACCAG
CTAATCTACAAGAGCTCCGTGACCGCTTGGAGGCTTACGGCGTTCCCGAT
GGGCTTGAAGTTTGCCGAATTGTTTACCATTGTTTGGGTCATAAATCGAA
AAATGCGAACGTGAAGGTGGATACGCTTTCTGCTGCACGTGGTTATTTCA
TGTACATGAAAAACTTTATGAAGCATGGTACTACTGGATCGGCTACGAAT
CATATCATTGAAGGAGATGAGTTGGCCGTTGTTTACGATGGAATCGCGTT
TCGAGTTAGTGCACCTCAGACTGAGATTCGACATAATAGCTTGTTCATGA
GCCTGCTTATTAGCGATGAACGTGAGAGAAATGGAAAGAACGTTCCCAAA
CGATCGATTATTCGGAGAATGTGCAGTACGTCGGAAGTGGTACTTTCGCT
GTGTCGAGAAATTACGTACTTGAATGCCGAATATGACGAAGACGGTGGGA
CGCTTTACTCGGCGTCTGCGGAAGAAGAAAACCTTTCGGAAGCTTGGACT
ACTTGTGTGGCACTGTATGTGTGTGACGGGTACGGCTGTCTGGAAGGGTG
CTTCAACTGCGCGATTGAGAATCGGAGAGGTGCCATTGTTGATGAAAGTT
CGGTGTTCATGAATGACGTTCAGGTGCCAGTGGTGTTCGATAAGTTGTAT
CGGAAAAGCACGCTGGCTGAGGAACTGTCGGCTATGAGTGATTCCAGGGG
TGCTACTTACCCCGGGGCGTTTATTTCGGGGAGGGACCAGTGTAATGAGC
GAACTTACCTTGCTGGAGAGAGACATGTGTTTGTGGCGGGCGGGTTGCTG
AGGTACTTGCAGAGGGAGCTGAGGATTGACTGGGGCGGCAGGAAGGAGGA
GAGAAGCGAGGTTAGCGTAATTGAGCTTTGA