Ggra843.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra843.t1
Unique NameGgra843.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000202_piloncontigtig00000202_pilon:50759..51865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009039927.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Evalue5.62e-46
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra843Ggra843Gracilaria gracilis GNS1m malegenetig00000202_pilon 50759..51865 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra843.t1.stop1Ggra843.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000202_pilon 50759..50761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra843.t1.CDS1Ggra843.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000202_pilon 50759..51865 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra843.t1.exon1Ggra843.t1.exon1Gracilaria gracilis GNS1m maleexontig00000202_pilon 50759..51865 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra843.t1.start1Ggra843.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000202_pilon 51863..51865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra843.t1Ggra843.t1Gracilaria gracilis GNS1m malepolypeptidetig00000202_pilon 50759..51865 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra843.t1 ID=Ggra843.t1|Name=Ggra843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp
LPPPASAVWPFSSPQPQSPSTASTVFSVLPTNIADVNLLPLDFQSAINAC
ATADVVFLGEHHNSLVDHALQARIISAMRSASTRPLAVGLEMVQAKFQPV
LDSFVARRLSELDLYLATEWETRWVWPYELYLPVLRACRRYNIPLVALSI
DSETLAKLRAQGGISNLSGLEMRTHVGDAAVFAAMMRESGFKNYVNECIT
PSYAAHYKLGLLNETTNFNTYFTSRMFRDEAMATRAVRHVLSNNGTLICL
LGADHVKFEYGVTGRVRRQLVAERNRRRERELMIRAAQGTPTDDLPQVAD
PLLKTVMLNPGPADAYDATDGSLKLEMPVGDIPVPIADYLWFSSASEANP
RRQVRRRVLPPIERLTSS*
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spliced messenger RNA

>Ggra843.t1 ID=Ggra843.t1|Name=Ggra843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000202_pilon:50759..51865- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCGCCTCCAGCCTCAGCAGTATGGCCCTTTTCCTCCCCGCAACCCCA
ATCCCCGTCCACCGCCTCCACCGTCTTCTCCGTGCTCCCCACAAACATTG
CAGACGTCAACCTGCTCCCGCTTGACTTCCAGTCCGCCATCAATGCCTGC
GCCACCGCCGACGTCGTCTTCCTGGGCGAGCACCACAACTCGCTCGTCGA
CCACGCCCTGCAGGCCCGCATCATCTCCGCCATGCGCTCCGCCTCCACCC
GCCCGCTCGCCGTCGGGCTCGAGATGGTGCAGGCCAAGTTCCAGCCCGTG
CTGGACAGCTTCGTTGCGCGCCGCCTCTCCGAGCTCGACCTCTACCTGGC
CACCGAGTGGGAGACGCGCTGGGTGTGGCCCTACGAACTCTACCTCCCCG
TGCTTCGCGCGTGCCGCCGCTACAACATCCCGCTCGTCGCGCTGTCCATC
GACTCGGAGACGCTGGCCAAGCTGCGCGCGCAGGGCGGCATCTCCAACCT
CTCCGGCCTGGAGATGAGGACGCACGTCGGCGATGCCGCCGTGTTCGCCG
CCATGATGCGCGAGTCGGGCTTCAAGAACTATGTCAACGAGTGCATCACC
CCCAGCTACGCCGCGCACTACAAGCTTGGCCTGCTCAACGAGACCACCAA
CTTCAACACCTACTTCACCAGCAGGATGTTCCGCGACGAGGCCATGGCCA
CGCGCGCCGTGCGTCACGTGCTGTCCAACAACGGCACGCTCATCTGCCTG
CTGGGCGCCGACCACGTCAAGTTCGAGTACGGCGTCACGGGCAGGGTGCG
TCGACAGCTGGTAGCGGAGCGCAACAGGCGGCGTGAGAGGGAGCTCATGA
TACGCGCGGCGCAAGGCACGCCCACCGACGATCTCCCGCAAGTGGCCGAC
CCGCTTTTGAAAACCGTCATGCTCAACCCAGGCCCCGCCGATGCGTACGA
CGCCACGGATGGCAGCTTGAAACTTGAGATGCCTGTTGGTGATATTCCTG
TGCCCATTGCCGATTACCTGTGGTTCAGCTCTGCGTCCGAGGCCAACCCG
AGGCGGCAAGTCAGACGGCGTGTGTTACCTCCCATTGAGCGTTTAACTAG
CTCTTAA
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protein sequence of Ggra843.t1

>Ggra843.t1 ID=Ggra843.t1|Name=Ggra843.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=369bp
LPPPASAVWPFSSPQPQSPSTASTVFSVLPTNIADVNLLPLDFQSAINAC
ATADVVFLGEHHNSLVDHALQARIISAMRSASTRPLAVGLEMVQAKFQPV
LDSFVARRLSELDLYLATEWETRWVWPYELYLPVLRACRRYNIPLVALSI
DSETLAKLRAQGGISNLSGLEMRTHVGDAAVFAAMMRESGFKNYVNECIT
PSYAAHYKLGLLNETTNFNTYFTSRMFRDEAMATRAVRHVLSNNGTLICL
LGADHVKFEYGVTGRVRRQLVAERNRRRERELMIRAAQGTPTDDLPQVAD
PLLKTVMLNPGPADAYDATDGSLKLEMPVGDIPVPIADYLWFSSASEANP
RRQVRRRVLPPIERLTSS*
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mRNA from alignment at tig00000202_pilon:50759..51865-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra843.t1 ID=Ggra843.t1|Name=Ggra843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000202_pilon:50759..51865- (Gracilaria gracilis GNS1m male)
TTGCCGCCTCCAGCCTCAGCAGTATGGCCCTTTTCCTCCCCGCAACCCCA
ATCCCCGTCCACCGCCTCCACCGTCTTCTCCGTGCTCCCCACAAACATTG
CAGACGTCAACCTGCTCCCGCTTGACTTCCAGTCCGCCATCAATGCCTGC
GCCACCGCCGACGTCGTCTTCCTGGGCGAGCACCACAACTCGCTCGTCGA
CCACGCCCTGCAGGCCCGCATCATCTCCGCCATGCGCTCCGCCTCCACCC
GCCCGCTCGCCGTCGGGCTCGAGATGGTGCAGGCCAAGTTCCAGCCCGTG
CTGGACAGCTTCGTTGCGCGCCGCCTCTCCGAGCTCGACCTCTACCTGGC
CACCGAGTGGGAGACGCGCTGGGTGTGGCCCTACGAACTCTACCTCCCCG
TGCTTCGCGCGTGCCGCCGCTACAACATCCCGCTCGTCGCGCTGTCCATC
GACTCGGAGACGCTGGCCAAGCTGCGCGCGCAGGGCGGCATCTCCAACCT
CTCCGGCCTGGAGATGAGGACGCACGTCGGCGATGCCGCCGTGTTCGCCG
CCATGATGCGCGAGTCGGGCTTCAAGAACTATGTCAACGAGTGCATCACC
CCCAGCTACGCCGCGCACTACAAGCTTGGCCTGCTCAACGAGACCACCAA
CTTCAACACCTACTTCACCAGCAGGATGTTCCGCGACGAGGCCATGGCCA
CGCGCGCCGTGCGTCACGTGCTGTCCAACAACGGCACGCTCATCTGCCTG
CTGGGCGCCGACCACGTCAAGTTCGAGTACGGCGTCACGGGCAGGGTGCG
TCGACAGCTGGTAGCGGAGCGCAACAGGCGGCGTGAGAGGGAGCTCATGA
TACGCGCGGCGCAAGGCACGCCCACCGACGATCTCCCGCAAGTGGCCGAC
CCGCTTTTGAAAACCGTCATGCTCAACCCAGGCCCCGCCGATGCGTACGA
CGCCACGGATGGCAGCTTGAAACTTGAGATGCCTGTTGGTGATATTCCTG
TGCCCATTGCCGATTACCTGTGGTTCAGCTCTGCGTCCGAGGCCAACCCG
AGGCGGCAAGTCAGACGGCGTGTGTTACCTCCCATTGAGCGTTTAACTAG
CTCTTAA
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Coding sequence (CDS) from alignment at tig00000202_pilon:50759..51865-

>Ggra843.t1 ID=Ggra843.t1|Name=Ggra843.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000202_pilon:50759..51865- (Gracilaria gracilis GNS1m male)
TTGCCGCCTCCAGCCTCAGCAGTATGGCCCTTTTCCTCCCCGCAACCCCA
ATCCCCGTCCACCGCCTCCACCGTCTTCTCCGTGCTCCCCACAAACATTG
CAGACGTCAACCTGCTCCCGCTTGACTTCCAGTCCGCCATCAATGCCTGC
GCCACCGCCGACGTCGTCTTCCTGGGCGAGCACCACAACTCGCTCGTCGA
CCACGCCCTGCAGGCCCGCATCATCTCCGCCATGCGCTCCGCCTCCACCC
GCCCGCTCGCCGTCGGGCTCGAGATGGTGCAGGCCAAGTTCCAGCCCGTG
CTGGACAGCTTCGTTGCGCGCCGCCTCTCCGAGCTCGACCTCTACCTGGC
CACCGAGTGGGAGACGCGCTGGGTGTGGCCCTACGAACTCTACCTCCCCG
TGCTTCGCGCGTGCCGCCGCTACAACATCCCGCTCGTCGCGCTGTCCATC
GACTCGGAGACGCTGGCCAAGCTGCGCGCGCAGGGCGGCATCTCCAACCT
CTCCGGCCTGGAGATGAGGACGCACGTCGGCGATGCCGCCGTGTTCGCCG
CCATGATGCGCGAGTCGGGCTTCAAGAACTATGTCAACGAGTGCATCACC
CCCAGCTACGCCGCGCACTACAAGCTTGGCCTGCTCAACGAGACCACCAA
CTTCAACACCTACTTCACCAGCAGGATGTTCCGCGACGAGGCCATGGCCA
CGCGCGCCGTGCGTCACGTGCTGTCCAACAACGGCACGCTCATCTGCCTG
CTGGGCGCCGACCACGTCAAGTTCGAGTACGGCGTCACGGGCAGGGTGCG
TCGACAGCTGGTAGCGGAGCGCAACAGGCGGCGTGAGAGGGAGCTCATGA
TACGCGCGGCGCAAGGCACGCCCACCGACGATCTCCCGCAAGTGGCCGAC
CCGCTTTTGAAAACCGTCATGCTCAACCCAGGCCCCGCCGATGCGTACGA
CGCCACGGATGGCAGCTTGAAACTTGAGATGCCTGTTGGTGATATTCCTG
TGCCCATTGCCGATTACCTGTGGTTCAGCTCTGCGTCCGAGGCCAACCCG
AGGCGGCAAGTCAGACGGCGTGTGTTACCTCCCATTGAGCGTTTAACTAG
CTCTTAA
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