Ggra8427.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8427.t1
Unique NameGgra8427.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:599509..600762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0233589
PFAMsSNARE,Syntaxin
Max annot lvl554915|Amoebozoa
KEGG koko:K04560,ko:K08486
KEGG Pathwayko04130,ko04721,ko04911,ko05031,map04130,map04721,map04911,map05031
Evalue1.97e-30
EggNOG OGsCOG5074@1|root,KOG0810@2759|Eukaryota,3X8X7@554915|Amoebozoa
DescriptionBelongs to the syntaxin family
COG categoryU
BRITEko00000,ko00001,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8427Ggra8427Gracilaria gracilis GNS1m malegenetig00000041_pilon 599509..600762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8427.t1Ggra8427.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 599509..600762 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8427.t1.start1Ggra8427.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 599509..599511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8427.t1.CDS1Ggra8427.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 599509..599559 +
Ggra8427.t1.CDS2Ggra8427.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 599647..600762 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8427.t1.exon1Ggra8427.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 599509..599559 +
Ggra8427.t1.exon2Ggra8427.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 599647..600762 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8427.t1.intron1Ggra8427.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 599560..599646 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8427.t1.stop1Ggra8427.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 600760..600762 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8427.t1 ID=Ggra8427.t1|Name=Ggra8427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MKDRLAELTAGCEIEAEVSMEQVDLENGLDEEAEADLVKFRKEMDMLSQA
VDRIHENVVLIEAQYQNSMDETMGADEKQRAANKISRLLERTEQTSDAIR
KRLRRLAKENKDYSSENPEKVGVLRIRVNTHQGLTKRFMAAMQSYEEAQE
KHRDHVRGALERQLRKMNPTATDEEIATALRRGETEAVVDNSPLLVELPF
EEQERLRNGLADLQSRNNDIRKLEENIIQLHQLFVDMQILVDAQGELLNT
IEYNVGETKDKTEAGFQELVQARAHQKSATKKKMCVILLIVVLLVVILTP
VLVKYIPVWFPSTQQVVESLPVVGGGAGDNENATANPSNSTRVGTSTARL
LSFRTQEEEEEEEEEEGRAMLLISSRSLLRLLRMNLKT*
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spliced messenger RNA

>Ggra8427.t1 ID=Ggra8427.t1|Name=Ggra8427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000041_pilon:599509..600762+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGACAGGCTTGCAGAGTTAACCGCAGGTTGTGAGATTGAGGCAGA
GGTTTCTATGGAACAAGTGGACCTAGAGAATGGGCTAGATGAAGAAGCCG
AAGCTGATTTGGTGAAGTTTCGGAAAGAGATGGACATGCTGTCTCAAGCG
GTCGATCGCATTCATGAGAACGTCGTTCTGATTGAAGCTCAGTACCAGAA
TTCAATGGATGAAACTATGGGTGCTGATGAGAAGCAACGCGCAGCCAATA
AGATCTCCAGGCTTCTTGAAAGAACAGAGCAAACTTCTGATGCAATCCGA
AAGCGTTTGCGAAGGCTAGCCAAGGAGAACAAAGACTACTCCAGTGAGAA
TCCTGAAAAGGTAGGTGTGCTAAGAATACGGGTTAACACTCACCAGGGCT
TGACAAAGAGGTTTATGGCAGCCATGCAATCTTATGAAGAGGCACAAGAA
AAGCATAGAGACCACGTGAGAGGAGCGCTCGAGAGACAACTGCGAAAAAT
GAACCCGACTGCTACAGATGAGGAAATTGCAACAGCCTTGCGAAGAGGCG
AAACGGAGGCTGTGGTGGACAATTCACCTCTTCTTGTAGAGCTGCCTTTT
GAAGAACAAGAAAGACTTCGGAATGGCTTGGCTGATCTCCAGTCAAGAAA
CAACGACATTAGGAAGCTGGAAGAAAACATTATTCAGCTTCATCAGCTCT
TTGTGGATATGCAGATATTAGTGGACGCTCAGGGCGAGCTGCTGAATACT
ATTGAGTATAACGTGGGCGAAACAAAGGATAAGACCGAGGCTGGATTCCA
AGAGCTGGTCCAAGCAAGGGCGCATCAGAAGTCGGCAACAAAGAAGAAAA
TGTGTGTGATACTGCTTATTGTTGTGCTACTCGTAGTTATACTCACTCCC
GTCTTGGTCAAATACATTCCTGTGTGGTTCCCGAGTACTCAGCAGGTTGT
AGAAAGTCTTCCAGTAGTCGGCGGTGGAGCAGGGGACAACGAAAATGCCA
CAGCAAACCCTTCGAATTCAACGAGAGTGGGCACTAGCACAGCAAGGCTT
CTTTCATTTCGAACCCaagaagaagaagaagaagaagaagaagaagaagG
ACGGGCCATGTTATTAATCTCCAGCAGGTCGTTATTACGACTACTGCGGA
TGAACTTGAAGACCTGA
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protein sequence of Ggra8427.t1

>Ggra8427.t1 ID=Ggra8427.t1|Name=Ggra8427.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MKDRLAELTAGCEIEAEVSMEQVDLENGLDEEAEADLVKFRKEMDMLSQA
VDRIHENVVLIEAQYQNSMDETMGADEKQRAANKISRLLERTEQTSDAIR
KRLRRLAKENKDYSSENPEKVGVLRIRVNTHQGLTKRFMAAMQSYEEAQE
KHRDHVRGALERQLRKMNPTATDEEIATALRRGETEAVVDNSPLLVELPF
EEQERLRNGLADLQSRNNDIRKLEENIIQLHQLFVDMQILVDAQGELLNT
IEYNVGETKDKTEAGFQELVQARAHQKSATKKKMCVILLIVVLLVVILTP
VLVKYIPVWFPSTQQVVESLPVVGGGAGDNENATANPSNSTRVGTSTARL
LSFRTQEEEEEEEEEEGRAMLLISSRSLLRLLRMNLKT*
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mRNA from alignment at tig00000041_pilon:599509..600762+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8427.t1 ID=Ggra8427.t1|Name=Ggra8427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000041_pilon:599509..600762+ (Gracilaria gracilis GNS1m male)
ATGAAGGACAGGCTTGCAGAGTTAACCGCAGGTTGTGAGATTGAGGCAGA
GGTAAGCCAAGGCTGTTTCACTATTTCCATTAGCTTGGTTTGCTTTAAAT
ATGGTAATCTAACAACGTGTTTGCTGTTCTGTCTTCAGGTTTCTATGGAA
CAAGTGGACCTAGAGAATGGGCTAGATGAAGAAGCCGAAGCTGATTTGGT
GAAGTTTCGGAAAGAGATGGACATGCTGTCTCAAGCGGTCGATCGCATTC
ATGAGAACGTCGTTCTGATTGAAGCTCAGTACCAGAATTCAATGGATGAA
ACTATGGGTGCTGATGAGAAGCAACGCGCAGCCAATAAGATCTCCAGGCT
TCTTGAAAGAACAGAGCAAACTTCTGATGCAATCCGAAAGCGTTTGCGAA
GGCTAGCCAAGGAGAACAAAGACTACTCCAGTGAGAATCCTGAAAAGGTA
GGTGTGCTAAGAATACGGGTTAACACTCACCAGGGCTTGACAAAGAGGTT
TATGGCAGCCATGCAATCTTATGAAGAGGCACAAGAAAAGCATAGAGACC
ACGTGAGAGGAGCGCTCGAGAGACAACTGCGAAAAATGAACCCGACTGCT
ACAGATGAGGAAATTGCAACAGCCTTGCGAAGAGGCGAAACGGAGGCTGT
GGTGGACAATTCACCTCTTCTTGTAGAGCTGCCTTTTGAAGAACAAGAAA
GACTTCGGAATGGCTTGGCTGATCTCCAGTCAAGAAACAACGACATTAGG
AAGCTGGAAGAAAACATTATTCAGCTTCATCAGCTCTTTGTGGATATGCA
GATATTAGTGGACGCTCAGGGCGAGCTGCTGAATACTATTGAGTATAACG
TGGGCGAAACAAAGGATAAGACCGAGGCTGGATTCCAAGAGCTGGTCCAA
GCAAGGGCGCATCAGAAGTCGGCAACAAAGAAGAAAATGTGTGTGATACT
GCTTATTGTTGTGCTACTCGTAGTTATACTCACTCCCGTCTTGGTCAAAT
ACATTCCTGTGTGGTTCCCGAGTACTCAGCAGGTTGTAGAAAGTCTTCCA
GTAGTCGGCGGTGGAGCAGGGGACAACGAAAATGCCACAGCAAACCCTTC
GAATTCAACGAGAGTGGGCACTAGCACAGCAAGGCTTCTTTCATTTCGAA
CCCaagaagaagaagaagaagaagaagaagaagaagGACGGGCCATGTTA
TTAATCTCCAGCAGGTCGTTATTACGACTACTGCGGATGAACTTGAAGAC
CTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:599509..600762+

>Ggra8427.t1 ID=Ggra8427.t1|Name=Ggra8427.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000041_pilon:599509..600762+ (Gracilaria gracilis GNS1m male)
ATGAAGGACAGGCTTGCAGAGTTAACCGCAGGTTGTGAGATTGAGGCAGA
GGTTTCTATGGAACAAGTGGACCTAGAGAATGGGCTAGATGAAGAAGCCG
AAGCTGATTTGGTGAAGTTTCGGAAAGAGATGGACATGCTGTCTCAAGCG
GTCGATCGCATTCATGAGAACGTCGTTCTGATTGAAGCTCAGTACCAGAA
TTCAATGGATGAAACTATGGGTGCTGATGAGAAGCAACGCGCAGCCAATA
AGATCTCCAGGCTTCTTGAAAGAACAGAGCAAACTTCTGATGCAATCCGA
AAGCGTTTGCGAAGGCTAGCCAAGGAGAACAAAGACTACTCCAGTGAGAA
TCCTGAAAAGGTAGGTGTGCTAAGAATACGGGTTAACACTCACCAGGGCT
TGACAAAGAGGTTTATGGCAGCCATGCAATCTTATGAAGAGGCACAAGAA
AAGCATAGAGACCACGTGAGAGGAGCGCTCGAGAGACAACTGCGAAAAAT
GAACCCGACTGCTACAGATGAGGAAATTGCAACAGCCTTGCGAAGAGGCG
AAACGGAGGCTGTGGTGGACAATTCACCTCTTCTTGTAGAGCTGCCTTTT
GAAGAACAAGAAAGACTTCGGAATGGCTTGGCTGATCTCCAGTCAAGAAA
CAACGACATTAGGAAGCTGGAAGAAAACATTATTCAGCTTCATCAGCTCT
TTGTGGATATGCAGATATTAGTGGACGCTCAGGGCGAGCTGCTGAATACT
ATTGAGTATAACGTGGGCGAAACAAAGGATAAGACCGAGGCTGGATTCCA
AGAGCTGGTCCAAGCAAGGGCGCATCAGAAGTCGGCAACAAAGAAGAAAA
TGTGTGTGATACTGCTTATTGTTGTGCTACTCGTAGTTATACTCACTCCC
GTCTTGGTCAAATACATTCCTGTGTGGTTCCCGAGTACTCAGCAGGTTGT
AGAAAGTCTTCCAGTAGTCGGCGGTGGAGCAGGGGACAACGAAAATGCCA
CAGCAAACCCTTCGAATTCAACGAGAGTGGGCACTAGCACAGCAAGGCTT
CTTTCATTTCGAACCCaagaagaagaagaagaagaagaagaagaagaagG
ACGGGCCATGTTATTAATCTCCAGCAGGTCGTTATTACGACTACTGCGGA
TGAACTTGAAGACCTGA
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