Ggra8424.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8424.t1
Unique NameGgra8424.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:586517..587629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709202.1
PFAMsGFO_IDH_MocA
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue7.13e-52
EggNOG OGsCOG0673@1|root,KOG2741@2759|Eukaryota
DescriptionD-xylose 1-dehydrogenase (NADP ) activity
COG categoryV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8424Ggra8424Gracilaria gracilis GNS1m malegenetig00000041_pilon 586517..587629 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8424.t1.stop1Ggra8424.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 586517..586519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8424.t1.CDS1Ggra8424.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 586517..587629 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8424.t1.exon1Ggra8424.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 586517..587629 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8424.t1.start1Ggra8424.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 587627..587629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8424.t1Ggra8424.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 586517..587629 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8424.t1 ID=Ggra8424.t1|Name=Ggra8424.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=371bp
MGSTVVRLGIISTASISDVIVKSVSFVDGIECTAIASRNVDRAQKYADKH
NIKHACNYEQILDKPIDAVYIPLPTALATEWAIRSANAGKHVFVDKPFAS
AAQVEEITNACEKAKVIFMDATHFVHAARTKEVQERIAAGDIGKIKRLQA
TYCIPMPNLANNIRSKPELEPMTLWGDLGWYVARSAIAFLGVNVTRNILS
VKCTSKAHERFPNVVENVEGVVKFGNEDGNKISLCFVIDCTATLIMRTTV
LGEMGYLEVDGYGVPPTQSSIFESVRKAEDYTDDTEYIFQKSVQAIDGDD
DYQWCYPSAEQIHVDEGGRSQATKMVQEFVRMIQDNDLSASSKWAVETMR
TQCIVDAVYEKVKEEHNWGQ*
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spliced messenger RNA

>Ggra8424.t1 ID=Ggra8424.t1|Name=Ggra8424.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000041_pilon:586517..587629- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGCACAGTCGTTCGGCTAGGGATAATATCCACTGCAAGTATCAG
CGACGTGATTGTGAAGAGTGTTTCTTTCGTTGACGGAATCGAGTGCACTG
CTATAGCGTCTCGCAATGTCGACAGAGCGCAGAAGTATGCCGACAAGCAC
AATATCAAACATGCATGTAACTACGAGCAAATCCTAGACAAACCTATTGA
TGCCGTTTATATCCCGCTCCCGACTGCTCTCGCCACCGAATGGGCAATTC
GCAGTGCCAACGCGGGCAAGCACGTTTTCGTCGATAAACCATTCGCATCT
GCTGCGCAGGTGGAAGAGATAACGAATGCGTGTGAGAAGGCAAAGGTTAT
ATTCATGGATGCCACCCATTTTGTGCATGCTGCTCGCACCAAAGAAGTCC
AAGAACGGATTGCGGCGGGTGATATCGGAAAGATAAAGCGATTGCAGGCT
ACGTACTGCATACCCATGCCAAACTTGGCTAACAACATCCGATCGAAGCC
CGAACTTGAACCTATGACACTTTGGGGCGATCTTGGCTGGTATGTGGCAC
GCTCGGCTATCGCATTCCTCGGTGTCAACGTTACCAGAAACATACTGTCA
GTTAAATGCACAAGTAAGGCACATGAACGTTTCCCTAATGTTGTAGAGAA
TGTTGAAGGGGTCGTAAAGTTTGGAAATGAAGATGGCAATAAGATATCTT
TGTGCTTTGTCATAGATTGCACTGCAACCTTGATAATGCGGACGACTGTT
TTGGGTGAGATGGGCTATCTTGAGGTAGATGGATATGGTGTACCCCCCAC
ACAATCCTCCATCTTCGAATCAGTTCGGAAGGCAGAAGATTACACGGACG
ATACTGAGTATATCTTCCAGAAGTCAGTTCAAGCAATCGATGGAGATGAT
GATTATCAATGGTGCTACCCATCTGCTGAACAGATCCACGTGGATGAAGG
TGGGCGATCACAGGCTACGAAGATGGTACAAGAATTTGTTCGTATGATTC
AAGACAACGATTTGAGCGCTTCTTCAAAGTGGGCGGTAGAAACTATGAGG
ACGCAGTGTATCGTGGATGCTGTGTACGAGAAGGTCAAGGAAGAGCATAA
TTGGGGGCAATAG
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protein sequence of Ggra8424.t1

>Ggra8424.t1 ID=Ggra8424.t1|Name=Ggra8424.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=371bp
MGSTVVRLGIISTASISDVIVKSVSFVDGIECTAIASRNVDRAQKYADKH
NIKHACNYEQILDKPIDAVYIPLPTALATEWAIRSANAGKHVFVDKPFAS
AAQVEEITNACEKAKVIFMDATHFVHAARTKEVQERIAAGDIGKIKRLQA
TYCIPMPNLANNIRSKPELEPMTLWGDLGWYVARSAIAFLGVNVTRNILS
VKCTSKAHERFPNVVENVEGVVKFGNEDGNKISLCFVIDCTATLIMRTTV
LGEMGYLEVDGYGVPPTQSSIFESVRKAEDYTDDTEYIFQKSVQAIDGDD
DYQWCYPSAEQIHVDEGGRSQATKMVQEFVRMIQDNDLSASSKWAVETMR
TQCIVDAVYEKVKEEHNWGQ*
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mRNA from alignment at tig00000041_pilon:586517..587629-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8424.t1 ID=Ggra8424.t1|Name=Ggra8424.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000041_pilon:586517..587629- (Gracilaria gracilis GNS1m male)
ATGGGCAGCACAGTCGTTCGGCTAGGGATAATATCCACTGCAAGTATCAG
CGACGTGATTGTGAAGAGTGTTTCTTTCGTTGACGGAATCGAGTGCACTG
CTATAGCGTCTCGCAATGTCGACAGAGCGCAGAAGTATGCCGACAAGCAC
AATATCAAACATGCATGTAACTACGAGCAAATCCTAGACAAACCTATTGA
TGCCGTTTATATCCCGCTCCCGACTGCTCTCGCCACCGAATGGGCAATTC
GCAGTGCCAACGCGGGCAAGCACGTTTTCGTCGATAAACCATTCGCATCT
GCTGCGCAGGTGGAAGAGATAACGAATGCGTGTGAGAAGGCAAAGGTTAT
ATTCATGGATGCCACCCATTTTGTGCATGCTGCTCGCACCAAAGAAGTCC
AAGAACGGATTGCGGCGGGTGATATCGGAAAGATAAAGCGATTGCAGGCT
ACGTACTGCATACCCATGCCAAACTTGGCTAACAACATCCGATCGAAGCC
CGAACTTGAACCTATGACACTTTGGGGCGATCTTGGCTGGTATGTGGCAC
GCTCGGCTATCGCATTCCTCGGTGTCAACGTTACCAGAAACATACTGTCA
GTTAAATGCACAAGTAAGGCACATGAACGTTTCCCTAATGTTGTAGAGAA
TGTTGAAGGGGTCGTAAAGTTTGGAAATGAAGATGGCAATAAGATATCTT
TGTGCTTTGTCATAGATTGCACTGCAACCTTGATAATGCGGACGACTGTT
TTGGGTGAGATGGGCTATCTTGAGGTAGATGGATATGGTGTACCCCCCAC
ACAATCCTCCATCTTCGAATCAGTTCGGAAGGCAGAAGATTACACGGACG
ATACTGAGTATATCTTCCAGAAGTCAGTTCAAGCAATCGATGGAGATGAT
GATTATCAATGGTGCTACCCATCTGCTGAACAGATCCACGTGGATGAAGG
TGGGCGATCACAGGCTACGAAGATGGTACAAGAATTTGTTCGTATGATTC
AAGACAACGATTTGAGCGCTTCTTCAAAGTGGGCGGTAGAAACTATGAGG
ACGCAGTGTATCGTGGATGCTGTGTACGAGAAGGTCAAGGAAGAGCATAA
TTGGGGGCAATAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:586517..587629-

>Ggra8424.t1 ID=Ggra8424.t1|Name=Ggra8424.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00000041_pilon:586517..587629- (Gracilaria gracilis GNS1m male)
ATGGGCAGCACAGTCGTTCGGCTAGGGATAATATCCACTGCAAGTATCAG
CGACGTGATTGTGAAGAGTGTTTCTTTCGTTGACGGAATCGAGTGCACTG
CTATAGCGTCTCGCAATGTCGACAGAGCGCAGAAGTATGCCGACAAGCAC
AATATCAAACATGCATGTAACTACGAGCAAATCCTAGACAAACCTATTGA
TGCCGTTTATATCCCGCTCCCGACTGCTCTCGCCACCGAATGGGCAATTC
GCAGTGCCAACGCGGGCAAGCACGTTTTCGTCGATAAACCATTCGCATCT
GCTGCGCAGGTGGAAGAGATAACGAATGCGTGTGAGAAGGCAAAGGTTAT
ATTCATGGATGCCACCCATTTTGTGCATGCTGCTCGCACCAAAGAAGTCC
AAGAACGGATTGCGGCGGGTGATATCGGAAAGATAAAGCGATTGCAGGCT
ACGTACTGCATACCCATGCCAAACTTGGCTAACAACATCCGATCGAAGCC
CGAACTTGAACCTATGACACTTTGGGGCGATCTTGGCTGGTATGTGGCAC
GCTCGGCTATCGCATTCCTCGGTGTCAACGTTACCAGAAACATACTGTCA
GTTAAATGCACAAGTAAGGCACATGAACGTTTCCCTAATGTTGTAGAGAA
TGTTGAAGGGGTCGTAAAGTTTGGAAATGAAGATGGCAATAAGATATCTT
TGTGCTTTGTCATAGATTGCACTGCAACCTTGATAATGCGGACGACTGTT
TTGGGTGAGATGGGCTATCTTGAGGTAGATGGATATGGTGTACCCCCCAC
ACAATCCTCCATCTTCGAATCAGTTCGGAAGGCAGAAGATTACACGGACG
ATACTGAGTATATCTTCCAGAAGTCAGTTCAAGCAATCGATGGAGATGAT
GATTATCAATGGTGCTACCCATCTGCTGAACAGATCCACGTGGATGAAGG
TGGGCGATCACAGGCTACGAAGATGGTACAAGAATTTGTTCGTATGATTC
AAGACAACGATTTGAGCGCTTCTTCAAAGTGGGCGGTAGAAACTATGAGG
ACGCAGTGTATCGTGGATGCTGTGTACGAGAAGGTCAAGGAAGAGCATAA
TTGGGGGCAATAG
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