Ggra8423.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8423.t1
Unique NameGgra8423.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:569034..570863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8423Ggra8423Gracilaria gracilis GNS1m malegenetig00000041_pilon 569034..570863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8423.t1Ggra8423.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 569034..570863 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8423.t1.start1Ggra8423.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 569034..569036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8423.t1.CDS1Ggra8423.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 569034..569991 +
Ggra8423.t1.CDS2Ggra8423.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 570601..570863 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8423.t1.exon1Ggra8423.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 569034..569991 +
Ggra8423.t1.exon2Ggra8423.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 570601..570863 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8423.t1.intron1Ggra8423.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 569992..570600 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8423.t1.stop1Ggra8423.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 570861..570863 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8423.t1 ID=Ggra8423.t1|Name=Ggra8423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=407bp
MEDNITLPVNLKQTLRHFNTFESGHTSLLSVSCIKENQTTMRTVRKAFRK
LAILVHPDRCKDHMNAAHRSMRLLSRALHLANAELQLTKERKVIFKDTEF
YLDYSVLLSTETTRTEYKLKEIEKASRNRPSEENTAMPFDKKESEDATKQ
REKDKEREEELRRQQVRKQQKQRELKSQHQREREQRQSAVEAGISAPHCT
DQGYGAESMTSEELRRTWWTERGDGDDADSGDDVHDDVENEHSEAQIDDI
EGFCAANYIRSISAEFVSSALGSGSVACNPDGDSGECDAAVGDTSAIASP
QGEFHGDQNISPGPKSGDRRAKAALEADLDGSKSWRPKRCVEITPQVGIS
LNFRWQCEQLIRAYTAYIGVQKAITVAQTLERVTTECRQANCNTKLTFNW
QLRSGL*
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spliced messenger RNA

>Ggra8423.t1 ID=Ggra8423.t1|Name=Ggra8423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000041_pilon:569034..570863+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACAATATTACACTTCCCGTCAATTTAAAACAAACTCTTCGCCA
TTTTAACACATTTGAAAGTGGTCATACGTCCTTACTAAGTGTTTCCTGCA
TCAAAGAGAATCAAACAACGATGAGAACTGTTCGGAAGGCATTCCGGAAG
CTTGCAATTTTAGTTCACCCTGATCGCTGCAAAGATCACATGAACGCAGC
ACATCGAAGCATGCGACTCCTGTCCCGTGCCCTACACCTCGCCAATGCGG
AACTACAACTCACAAAAGAGCGCAAAGTAATATTCAAAGACACCGAGTTC
TACTTGGACTATAGTGTCCTGCTCAGCACTGAGACGACCCGAACCGAGTA
CAAATTGAAAGAAATAGAGAAGGCTAGTCGCAACCGTCCCAGTGAAGAAA
ACACCGCAATGCCGTTTGACAAGAAAGAATCGGAGGATGCAACAAAGCAG
CGAGAAAAAGACAAGGAGAGAGAGGAAGAGTTGAGACGGCAACAAGTAAG
AAAGCAACAGAAGCAGCGTGAGTTAAAATCACAGCACCAACGAGAGAGGG
AGCAGCGACAAAGCGCAGTTGAGGCAGGTATTTCAGCGCCTCATTGTACA
GACCAGGGGTATGGAGCTGAGAGTATGACGTCTGAGGAACTTCGTAGAAC
GTGGTGGACAGAGAGAGGTGATGGTGATGACGCTGATTCTGGTGATGATG
TTCATGACGATGTAGAAAATGAACATTCGGAGGCCCAAATAGATGATATT
GAGGGGTTCTGTGCCGCAAACTACATCCGTTCGATTTCAGCTGAGTTTGT
CAGTTCCGCTCTCGGTTCAGGTTCTGTGGCCTGTAACCCAGATGGTGACA
GTGGGGAATGTGATGCAGCTGTGGGTGACACTAGTGCCATTGCTTCTCCC
CAGGGTGAATTTCATGGTGACCAAAATATCTCACCTGGACCGAAGTCAGG
AGACAGGAGAGCTAAGGCTGCGCTTGAAGCAGATTTGGACGGTTCGAAAT
CATGGAGACCTAAGAGATGTGTCGAAATCACGCCACAGGTAGGAATATCG
TTGAACTTTCGATGGCAGTGCGAGCAACTGATTAGAGCCTACACAGCGTA
CATAGGTGTTCAGAAAGCGATAACGGTTGCTCAGACCTTGGAGCGTGTTA
CAACGGAATGCCGCCAGGCGAATTGTAACACTAAGCTTACGTTCAATTGG
CAACTTCGCAGCGGTCTGTAG
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protein sequence of Ggra8423.t1

>Ggra8423.t1 ID=Ggra8423.t1|Name=Ggra8423.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=407bp
MEDNITLPVNLKQTLRHFNTFESGHTSLLSVSCIKENQTTMRTVRKAFRK
LAILVHPDRCKDHMNAAHRSMRLLSRALHLANAELQLTKERKVIFKDTEF
YLDYSVLLSTETTRTEYKLKEIEKASRNRPSEENTAMPFDKKESEDATKQ
REKDKEREEELRRQQVRKQQKQRELKSQHQREREQRQSAVEAGISAPHCT
DQGYGAESMTSEELRRTWWTERGDGDDADSGDDVHDDVENEHSEAQIDDI
EGFCAANYIRSISAEFVSSALGSGSVACNPDGDSGECDAAVGDTSAIASP
QGEFHGDQNISPGPKSGDRRAKAALEADLDGSKSWRPKRCVEITPQVGIS
LNFRWQCEQLIRAYTAYIGVQKAITVAQTLERVTTECRQANCNTKLTFNW
QLRSGL*
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mRNA from alignment at tig00000041_pilon:569034..570863+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8423.t1 ID=Ggra8423.t1|Name=Ggra8423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1830bp|location=Sequence derived from alignment at tig00000041_pilon:569034..570863+ (Gracilaria gracilis GNS1m male)
ATGGAAGACAATATTACACTTCCCGTCAATTTAAAACAAACTCTTCGCCA
TTTTAACACATTTGAAAGTGGTCATACGTCCTTACTAAGTGTTTCCTGCA
TCAAAGAGAATCAAACAACGATGAGAACTGTTCGGAAGGCATTCCGGAAG
CTTGCAATTTTAGTTCACCCTGATCGCTGCAAAGATCACATGAACGCAGC
ACATCGAAGCATGCGACTCCTGTCCCGTGCCCTACACCTCGCCAATGCGG
AACTACAACTCACAAAAGAGCGCAAAGTAATATTCAAAGACACCGAGTTC
TACTTGGACTATAGTGTCCTGCTCAGCACTGAGACGACCCGAACCGAGTA
CAAATTGAAAGAAATAGAGAAGGCTAGTCGCAACCGTCCCAGTGAAGAAA
ACACCGCAATGCCGTTTGACAAGAAAGAATCGGAGGATGCAACAAAGCAG
CGAGAAAAAGACAAGGAGAGAGAGGAAGAGTTGAGACGGCAACAAGTAAG
AAAGCAACAGAAGCAGCGTGAGTTAAAATCACAGCACCAACGAGAGAGGG
AGCAGCGACAAAGCGCAGTTGAGGCAGGTATTTCAGCGCCTCATTGTACA
GACCAGGGGTATGGAGCTGAGAGTATGACGTCTGAGGAACTTCGTAGAAC
GTGGTGGACAGAGAGAGGTGATGGTGATGACGCTGATTCTGGTGATGATG
TTCATGACGATGTAGAAAATGAACATTCGGAGGCCCAAATAGATGATATT
GAGGGGTTCTGTGCCGCAAACTACATCCGTTCGATTTCAGCTGAGTTTGT
CAGTTCCGCTCTCGGTTCAGGTTCTGTGGCCTGTAACCCAGATGGTGACA
GTGGGGAATGTGATGCAGCTGTGGGTGACACTAGTGCCATTGCTTCTCCC
CAGGGTGAATTTCATGGTGACCAAAATATCTCACCTGGACCGAAGTCAGG
AGACAGGAGTGAGATAAGGAAACGTCAGAAGAAAGCATCAAAGAAAAGAG
CCATGtgtggtataatgcacaaaaaggagagagtccgaagcggtcttgag
acgggagcggcggcagcgtacagtcttatgactgtaatgaatccgaacgg
agagaaggggcggaagcaccgggcggtcgagtggagagtggacgattggt
atcaccaggcgcgtacaggaacgtgcggaagggtacgaacggtctgagaa
tcccaataaaaaagtagccgtgcggtctatcgtgaatgcaaactatcgaa
gaagacgttcggcagaagatgcttgtcgtttacgattgggggcctcggaa
gatccgaactacaactaaatatcgggtctgggccccattactaactactg
tacgatcggtctaatttgcattgtcaccacccagcaccacacaatcacca
cacgtgtccaacttgtacgctcggccaacccgtccggcactcggtcatca
tctcgtacacgtgggggtgccactgcaccaacccaccttgcactacccct
ttgtacgtggacggctaatcggatacacaaagcaccaactcgggcccact
atactacaCCATGGAAGGAGCTAAGGCTGCGCTTGAAGCAGATTTGGACG
GTTCGAAATCATGGAGACCTAAGAGATGTGTCGAAATCACGCCACAGGTA
GGAATATCGTTGAACTTTCGATGGCAGTGCGAGCAACTGATTAGAGCCTA
CACAGCGTACATAGGTGTTCAGAAAGCGATAACGGTTGCTCAGACCTTGG
AGCGTGTTACAACGGAATGCCGCCAGGCGAATTGTAACACTAAGCTTACG
TTCAATTGGCAACTTCGCAGCGGTCTGTAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:569034..570863+

>Ggra8423.t1 ID=Ggra8423.t1|Name=Ggra8423.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00000041_pilon:569034..570863+ (Gracilaria gracilis GNS1m male)
ATGGAAGACAATATTACACTTCCCGTCAATTTAAAACAAACTCTTCGCCA
TTTTAACACATTTGAAAGTGGTCATACGTCCTTACTAAGTGTTTCCTGCA
TCAAAGAGAATCAAACAACGATGAGAACTGTTCGGAAGGCATTCCGGAAG
CTTGCAATTTTAGTTCACCCTGATCGCTGCAAAGATCACATGAACGCAGC
ACATCGAAGCATGCGACTCCTGTCCCGTGCCCTACACCTCGCCAATGCGG
AACTACAACTCACAAAAGAGCGCAAAGTAATATTCAAAGACACCGAGTTC
TACTTGGACTATAGTGTCCTGCTCAGCACTGAGACGACCCGAACCGAGTA
CAAATTGAAAGAAATAGAGAAGGCTAGTCGCAACCGTCCCAGTGAAGAAA
ACACCGCAATGCCGTTTGACAAGAAAGAATCGGAGGATGCAACAAAGCAG
CGAGAAAAAGACAAGGAGAGAGAGGAAGAGTTGAGACGGCAACAAGTAAG
AAAGCAACAGAAGCAGCGTGAGTTAAAATCACAGCACCAACGAGAGAGGG
AGCAGCGACAAAGCGCAGTTGAGGCAGGTATTTCAGCGCCTCATTGTACA
GACCAGGGGTATGGAGCTGAGAGTATGACGTCTGAGGAACTTCGTAGAAC
GTGGTGGACAGAGAGAGGTGATGGTGATGACGCTGATTCTGGTGATGATG
TTCATGACGATGTAGAAAATGAACATTCGGAGGCCCAAATAGATGATATT
GAGGGGTTCTGTGCCGCAAACTACATCCGTTCGATTTCAGCTGAGTTTGT
CAGTTCCGCTCTCGGTTCAGGTTCTGTGGCCTGTAACCCAGATGGTGACA
GTGGGGAATGTGATGCAGCTGTGGGTGACACTAGTGCCATTGCTTCTCCC
CAGGGTGAATTTCATGGTGACCAAAATATCTCACCTGGACCGAAGTCAGG
AGACAGGAGAGCTAAGGCTGCGCTTGAAGCAGATTTGGACGGTTCGAAAT
CATGGAGACCTAAGAGATGTGTCGAAATCACGCCACAGGTAGGAATATCG
TTGAACTTTCGATGGCAGTGCGAGCAACTGATTAGAGCCTACACAGCGTA
CATAGGTGTTCAGAAAGCGATAACGGTTGCTCAGACCTTGGAGCGTGTTA
CAACGGAATGCCGCCAGGCGAATTGTAACACTAAGCTTACGTTCAATTGG
CAACTTCGCAGCGGTCTGTAG
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