Ggra8420.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8420.t1
Unique NameGgra8420.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:541038..548073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8420Ggra8420Gracilaria gracilis GNS1m malegenetig00000041_pilon 541038..548073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8420.t1Ggra8420.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 541038..548073 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8420.t1.stop1Ggra8420.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 541038..541040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8420.t1.CDS1Ggra8420.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 541038..541055 -
Ggra8420.t1.CDS2Ggra8420.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 541138..541149 -
Ggra8420.t1.CDS3Ggra8420.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000041_pilon 542593..542597 -
Ggra8420.t1.CDS4Ggra8420.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000041_pilon 542672..542694 -
Ggra8420.t1.CDS5Ggra8420.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000041_pilon 547544..547837 -
Ggra8420.t1.CDS6Ggra8420.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000041_pilon 547934..548073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8420.t1.exon1Ggra8420.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 541038..541055 -
Ggra8420.t1.exon2Ggra8420.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 541138..541149 -
Ggra8420.t1.exon3Ggra8420.t1.exon3Gracilaria gracilis GNS1m maleexontig00000041_pilon 542593..542597 -
Ggra8420.t1.exon4Ggra8420.t1.exon4Gracilaria gracilis GNS1m maleexontig00000041_pilon 542672..542694 -
Ggra8420.t1.exon5Ggra8420.t1.exon5Gracilaria gracilis GNS1m maleexontig00000041_pilon 547544..547837 -
Ggra8420.t1.exon6Ggra8420.t1.exon6Gracilaria gracilis GNS1m maleexontig00000041_pilon 547934..548073 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8420.t1.intron1Ggra8420.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 541056..541137 -
Ggra8420.t1.intron2Ggra8420.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000041_pilon 541150..542592 -
Ggra8420.t1.intron3Ggra8420.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000041_pilon 542598..542671 -
Ggra8420.t1.intron4Ggra8420.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000041_pilon 542695..547543 -
Ggra8420.t1.intron5Ggra8420.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000041_pilon 547838..547933 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8420.t1.start1Ggra8420.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 548071..548073 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8420.t1 ID=Ggra8420.t1|Name=Ggra8420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=164bp
MCAPPAPLLITRRAAFERFALRSPSAFVALCSFVSRAAVASFPPPSLASS
SKFEVRVESGDKITTTIDVYVTWERGAKLLATRPCKIDRQSKTAHFGGEP
LSQEVTLFKKKRDNAQFEPKIYKLYVRQANERGKILARIDLDFSDEFSLL
LKRHISLINWTLR*
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spliced messenger RNA

>Ggra8420.t1 ID=Ggra8420.t1|Name=Ggra8420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00000041_pilon:541038..548073- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCCCGCCCGCCCCGCTGCTTATCACCCGACGTGCTGCCTTTGA
GAGATTCGCCCTTCGTAGCCCATCCGCTTTTGTTGCGCTTTGTTCTTTCG
TTTCACGGGCTGCCGTTGCGTCGTTCCCACCACCCTCTTTGGCTTCGAGT
TCAAAATTTGAGGTGCGCGTCGAATCTGGCGACAAAATCACCACCACCAT
CGATGTGTATGTCACCTGGGAACGAGGAGCAAAGCTTCTGGCCACGAGGC
CATGCAAGATAGACAGGCAATCCAAAACCGCTCATTTTGGCGGCGAACCG
CTCTCACAGGAGGTCACCCTCTTCAAGAAAAAGCGCGATAACGCTCAGTT
TGAACCTAAGATATACAAGCTCTACGTGCGACAGGCAAACGAACGCGGAA
AGATCCTCGCAAGGATTGACTTGGATTTCTCTGACGAGTTCTCTCTGCTT
TTGAAACGGCATATTTCGCTAATTAATTGGACATTGCGTTGA
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protein sequence of Ggra8420.t1

>Ggra8420.t1 ID=Ggra8420.t1|Name=Ggra8420.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=164bp
MCAPPAPLLITRRAAFERFALRSPSAFVALCSFVSRAAVASFPPPSLASS
SKFEVRVESGDKITTTIDVYVTWERGAKLLATRPCKIDRQSKTAHFGGEP
LSQEVTLFKKKRDNAQFEPKIYKLYVRQANERGKILARIDLDFSDEFSLL
LKRHISLINWTLR*
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mRNA from alignment at tig00000041_pilon:541038..548073-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8420.t1 ID=Ggra8420.t1|Name=Ggra8420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=7036bp|location=Sequence derived from alignment at tig00000041_pilon:541038..548073- (Gracilaria gracilis GNS1m male)
ATGTGCGCCCCGCCCGCCCCGCTGCTTATCACCCGACGTGCTGCCTTTGA
GAGATTCGCCCTTCGTAGCCCATCCGCTTTTGTTGCGCTTTGTTCTTTCG
TTTCACGGGCTGCCGTTGCGTCGTTCCCACCACCCTCTTTGTGTCCAACC
CCGCACTGAACCCGCCCCTCCAGATGAAGGGATCTTCTTCCAAGCTTATC
TCTAAAGTTGGCTCAGTGCGGAACATCAACAAGCAGGGCTTCGAGTTCAA
AATTTGAGGTGCGCGTCGAATCTGGCGACAAAATCACCACCACCATCGAT
GTGTATGTCACCTGGGAACGAGGAGCAAAGCTTCTGGCCACGAGGCCATG
CAAGATAGACAGGCAATCCAAAACCGCTCATTTTGGCGGCGAACCGCTCT
CACAGGAGGTCACCCTCTTCAAGAAAAAGCGCGATAACGCTCAGTTTGAA
CCTAAGATATACAAGCTCTACGTGCGACAGGCAAACGAACGCGGAAAGAT
CCTCGCAAGGATTGACTTGGATTTCTCTGAGTATGTCGAGATTCTCTTGT
TCGCAAAGCGCATTGGCGCCTCTATGTCACGCGGAGAGCGTCTTATTAAG
AGCTTTTTCGTTCGCGGAAACGTCGATGATTGTTGAGGAAACCGAGGTAT
TTTATTAAGCGAGGCATGGGTCGTGCAACAGAAGCCCGTGGCGCGACCCA
AACTTTTGTGACACGCATGTACGCTTTTGCTCTTGTGGCGGACCTGAAAC
AAATCGATCACAACATTCCAGCGATGCATGGGTCGTGTCACAGAAGCCCG
TGGCGCGACCCAAACGTGTGTCCCGTATGTACCAACGGTGCGCGTTTGTT
CTTGTGGCGGACGAAAGACAAATCGATCTCAACACACTGCAACCGACCGC
CTCAGAGTGATGGCATCACTCTGAGGCGATCGGCGGCAAGCACAGAAGGT
GCCGTCCCCAACGGAGATACGAAGTTTCTCGTTATCGTCCAACCCGACGC
CGCCTGATGGTGGAATGTCTGTGCCGCCGAAGGAGATGTCGCATGTTTCT
AGAACTTTATCCGATGATGCAGTAGGGTGGGGCGCAGAGCGGAGAGTTTC
ATAATCACTTTATCATTTACATTCGCTGTTTCAACCCTGATCTTAATACG
TGCTCTTCGTACTAGGTCACATGTACACCGCCGAGAGTTCATCTGTTCCC
CAAAGACTCGTTCACGATGTCCCGGTTCACCTCTAGTTTTTCTCAATAAG
AGCTTTTCTCTCGGTGCGCGTCATGGCCATACAGGTTTGGTGACAAAGAT
AGCGCTGCGGTTGATCAATCAACGTCTTCCGACGGCGCTCCGGTTTTTGT
GTGGATGCCAATGAAATCTTTCTATTCCCTCATCGGCCAAATGGCTTTCT
CATGCAGCTGGTCGTGTTGCTGACGTTATTGCTGATATAATGTGGTGCAG
CGTAGGTCGCGCACACTTTGGTCAAAAGGTGGCCATCGGTTCAACGAACT
ACGTTGAAAATATCAAGCAGAAACCTTCGTGAGTGTATGGTACATGAACC
TAACGCCCAACACAATGCAACAAGCCCAGACCCAATAACTAACATAATCA
CCCCAATTTAACTGCACCTAACAGAAAAGCGCACGCGAAATCGCGACGAT
ATCTGGTGAACCGGAACTGTCGTCACCATGTGCTACTGTCATGTTTGCAG
TGGAGAATCTTTCGGAACTCGGCCGAATGCCGAGGAGCAGTTTGCTGCTA
AACGTGTCAACGTCTTGGCTCATTACCAGATAGTAAAGGCATTACGAATC
CAACAAGGAGGCTTTGCGTACGAGTATCAGCTGAAACTCAGGCTTGACCG
TATAGAGCTCCTGGCCGTGATGAAATGTTTCCGATGACATATCAACCTGT
TCGTATCACCCCTTGCAGTACGGCATGTGCATTTTGCTTATTCCGTAACC
GAAATGGATCCACGTAATAACGGCGTCCATCAATATCTAAGAATCCAATC
AATCTGTCAACACACTGGGCATGCTCGATAGTAATCTCTCCGCTTTTAAT
GTTGTCGCTATACACGAGGTCGAAGCGTTCCTCTTCGACTAATTTGTAAT
GCCATTTCACATCCAGGAACACTGATGTTACACGCATGGGTCCCGCTCCG
AACTCCAGCTCAAACTGAAGAATCCTTTTCACACTTCCGTAGTAGAGGTG
CTTGACCACAGGAGAGGTGGATGTGGTCGGACTGAGAAGGGAACTTTGTG
GATTCTCGGCAAGGAAATGGGCGGCGATGCAAAACTTCTGCCCTGCAGTT
CTCTGATATGTTTTTGATCGAGATGTGAAAGACTGCAATGATTCTATCGT
TATGGATCCAGACGGGATCGTTAATTTGGCCGCTTTGAACTTCTTTACAG
ATCGTGTGCAAAATGAGTTAGCATGTTTCGGAAAGTTCTCATTCATGAAT
CTTTGCACTGCTCGTGCATGAGAGGGAGTGGTTCTCGCGTCCAATACTCC
AGTTCCAATACATTTAGTCCCCGTGTGAAACTCTAAAGGTCGCATGCCCA
AATCTGCAGCGCTTGAAGGATGAAACGTTGACGTGAAAGTTTGTGAAGGA
TCCTCCAATGGATTGATGGGTTCCCCTTCGTTTGCCAACGTCAAAGTCAG
GAGTTTGAAGTTTTTATGAAAAAGATGTGCAGAGAGACTCGACGTTTGCT
GAACCCGTTTCCCAATTTCGCCGAGCAGCCTTTCCACCATAAACTGTGAA
GATAACGGCAGAGGGCCGCACTCCTTCAGTAGCTCAGGGAGATGTAGAAT
GGCATGAGTTGTTGGCGTCAAACAATTTCTTGAAGAGGTTCCTTCCACAA
ACAAGCGCACAAATCTCGCGTACAACTGTTCCACCACCATTGTGAGCTGC
TGAATACTATTAGCACCGCAGCCATATCCGAAACTTATACTGATCATGTT
TGCCGTCAAATGAAAGAGATGAAGGACCTTCTTCTCGACCTTGTACCTGT
GAAAGAAGGGCATCAAGTACAATTGCGCATGGCGCTTTAGATCTTCAGCC
TTGAAGTGCGCCAAATTCTTCAGTGGTAAAGGAGACCGTCCCCAGCAGCT
TGGAATACCAGCGGAAGAATCGGCCATTGCCTGACAAATCTTCTCCAGAA
TTGCAGGAAAAATGCGGTACTTTGGGAGTTGGCGCAAATTTTGATGGCAT
CTTTGCGTCCCAGTAACCAGCCGCAGTACATGCTTCGTCCATCCGATAAG
AACGGGGTGCATTATGTCGTACGGGAACGCATAAATGAAGTCAAGTTCAA
GAGAGAAAAGACAGGAACTTTTCTTAATGCCGCTATAAGCTACGATTTCT
TTGCGGGCCCTTTGATCGGTTTTGTTTGATCGCAACTTCCTCCAAATCCT
CGCTACATCGCTTGAAACTCGCTTCTCACCGCACTCCGATTTTACTACAT
CAACAGGGTTGTACCGTATCTGTACAACAATTTTCAGAACATTCATATCC
GCTGGTACCGCACACAAGCACTTGCACTCCTTGACATATATCCTCCGCTT
CATGCAGAAGCGACAAAATACTTTGCCAGTGTGGCCAATGTAACCGAGGA
CTTTTGATGCTGCCGGCCAATCTGCGTTGAAGTTCAACAGGAAGGCCTTC
AGCTTTCTGACCTTTCCATCATGACAGGGTACGGGTACCCCAGTCTCCAA
AAATCTCAAGTCGAGGATGATTTCGTTCATGAACGAATCGAAGTACTTGG
GGTCGTCCGAGTCTGGGACGACTGCAAGTATCAAAACATTGGATGCCCGA
CTACGCTCTTCCGGTGTGTGGTTAAGAACGCTGGCAACAATAGGCCAAGC
TGAAACTGGTTCACCTCTTCTATTTCTAGTGCATTCAAATCCATCAGTTG
AAAGCGTTAGAAACACATACAGCTCGTCGCTTTCTGGGGTCCAAGACTCA
AGCCGTTCACCATGCATTCTAATGAACATCTCGCCATGAAAGTAATCGTG
AAATTGTGACTCCGATTTTACATCGCCAATCGTCTTTCGTGCCCGTATAC
ATCCCTCCATTACTGCTGAAAACGTTTCGCGAGCACCACACAATCCTTTC
AAGGCTGATGATGGCTTCATGAACCAGAACTTGGATCTGCTTTCTGATGA
TGGCAAACCGCAGCTTTGACAGCTTTGGGAGGCTCTAAGGCTTCCTGTGT
ATGCAGCATGTCCTAATTTGCACATGGGGACGTGCGACTTCTCTACCTGA
GACTTCTTTGCAGCATACGATATCAACGTTCTGTAGGAATGTCTTGCTTG
AATTGGTCCGACACGGAGAAGCTTTTCAATTCTTCGCTGAGAAACACCAG
CCACCTCTGCTGTGTACAAAAACCTGGAGAGACGCTTGTATTCAATATCT
TTGACATCAAAATCACTCGTTTCACTGCTATACATCTGAAACGAGGACCA
AGAAGAATTAGGATTGAGAGAAGATAGCAGGTAAGAGGGTGTCTCTCCGG
ACAGAGATGTGCCCGAACGGCATTGTGCTTCTTGGAAAATTTGGTTTCCA
GGGGGAGGAGTGGGATTTGTAGCTGAGACAGAAGAAGGAGGCCCAACAGA
GTAAGACGGAAGGTCAAATTGCGACTCGTTTCCTCGCTCAAGATTAGCAG
TCGTTGCAATGCCCTCATTGCACTTATCAGTTTCCATACTGTGCTCATCC
ATCAAGTCATCTGGGAAGCATGGTGTCTCGGCCCTGCAGTCTACAGCTTC
AAAAGAGTTTTCGTTCTCTTCGTTTTCTTCTCCGTTATTAACTCGATTTG
GGCATTGATCCACTCTGTTCTGCACTGTTTGCCATCGGCAGAGACGTTTT
TGAATGCCTTCCTCTGGTTGGCAATCAGCCGTGTGTATATCTCCATTGTG
CCATGATTGTGTTTGGGCATTACCCGTGGCAGATGAGATGATATTTCCCA
TCTGTAGCGCTTTCTACCTCTCCCCATGCCTCTCGTCAGATGGAGAAGAA
GAGGACTCCTTTCGGATGCAGGAGCGTACCACAACCAATTCAGATTAACT
ACTCTTAACCAACCAGTTCTGAGAAGTGAAATCGAGGACATGAAATATAT
TCAAAACTTCTGTCTCATCCCAGCGCTTCAAACATCAGGGAATAAGTTTC
ACTATTTTCATATCGATAGGAGCTTTTCGTTCCGCCCAAGGGAGCAACGC
GGAACTTAAGCCTCATTCCCGTCTCTCCCACTCCTCGTCTCTTTTCGTCT
CTCTCATTCCACCGTCAGCGAAATCCTCTCTGAAACAAGAAGCAGGACTT
CAATCTTTGGACACGGCTGCTTTAGCCGACAATTCATATCGTTGAGCGTT
CCCACCCTTCTCTGCGTTTGCTTTCCTAGCGAGTTCTCTCTGCTTTTGAA
ACGTAAGTCTCCGAACTTTGCATTTCCTCGAGGCTGCGTTGACTCTAACT
TCGGCTGCATATTTATATCCGGTCAGGGCATGTCATGAGCTCCAGGACGT
TGCATCCTGTGACGGTGGACAGCGCTATTGCCCCCAATTTCCGAGGCAAT
GCATCCTTTGAGGCATCTAACCAAAATACGATCGCAGTGTCAACCGCTCC
GAGTGTAAATCGGAACGTAAACGTAGAACTGCAGCCAAACGCACTTGATA
GGCACATTATGCTGTCGCCGAGGTCTGTCATTATACCAACTGCTATGTGC
AAAAGGAGGATGAAGGAGTCAGACCGCCCTGGGGTGCCCACGGGTACAAC
GGTTTCTGCAAGGTCTTTATTCAATCGTCTGTACCAGGAGCGGATGGGCC
GCAGTACGGAACAAATTGAAGATGACTTTCCAATTTACCCGGAGATGGCC
AATGCAATCAAAGATGATGTGCGAATGTTTCGATACCAGCGACTCGGTCT
TGAGCGAGGGATTCGAACTTACACCTACCTCAAGAAAGAGTACTCATCCC
AATTTTCAAATATGAAGAGACGTCTTATAGAACGTATCCCGTCCTCTCCA
CTGCTCAGAGAGGATGGGTTATGGATTATCTCATCAAGGAAGCCGTTCAA
AGAGATAAGAAGGCTGCCGTTGAGGCCTTGAAGCGTAGCAAGAAGAACAA
CACCGATGCAACCGCAGCTACCATCCCCACCCATGAGCAGAACACACTCA
CCCAGGTGCCTCAATCTAGTACCGGATGCCATCAAGTCGGGGGATCTAGC
ATTGGTGTTCAAAGAATTTGCAGTAATGACACTAACAACGCTCGTCCTTC
ATGCGCGAAAGAGATACATGTTCAGGATGAAGGACCTCGTAGCGGAACAG
GATTTCGCGTTGCTTTACGTGAAGAAATTGGGAGCATTGAGCAGCATGAG
CGGAGCGAAGGTGAAGGTAATGAGAACCAGAGTTTCGGAAGAGGTACTGA
AGATGAAACCATCGCTCCGTCTATTGCATGAGCTACATCTCAGGTACAGG
GGGAGAAACTGGGAAGGAAGAGAAGGGCCTCTGTTGGGAAGAAACAGCCT
AGAAGTGTATTCCAATGCAAGCTTCGTTTCAACACGGAACGAAAGGCCTT
GGGCACTTGTCATCGAAGCGACAACGAGATATCTCCACACCTGTCTGGAG
ACGAAGGGGACTCCTCGAAGGATGAGGGTCACGGTGTTGTGCTTCATAAG
GCTTTCGATGCTCTTGACAAGAAAAAGGAAGCCGTCCAACGCTACTCCAG
GACTGGAGGGCGAAAGTGCAGATTTAGTATGTCGCGCAAATGAATGAGAG
AAGTCAGTTGTTGAAGTTGCACGTTCTGCATGTGAGTTCTAAGTTCCAAA
CGTACGTCTTATCGAAAAGTCGACTAACCGGATGCTCTCATCTCTTTCAC
AGAATCTTTCCATCAACTTCTGAAAGGTCCTCATTACGTACTCTACAGAT
TGGTATCGAAGTAAGCGAAGTTAGATTTCGCTAATTGTAAGTGCGAACTC
AAGCTTAAATCCTCCGGACATATTCTAACGTTCCCTGCATATCTCTCGTA
CCACTCCTATACAAATAGAATTGGACATTGCGTTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:541038..548073-

>Ggra8420.t1 ID=Ggra8420.t1|Name=Ggra8420.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=492bp|location=Sequence derived from alignment at tig00000041_pilon:541038..548073- (Gracilaria gracilis GNS1m male)
ATGTGCGCCCCGCCCGCCCCGCTGCTTATCACCCGACGTGCTGCCTTTGA
GAGATTCGCCCTTCGTAGCCCATCCGCTTTTGTTGCGCTTTGTTCTTTCG
TTTCACGGGCTGCCGTTGCGTCGTTCCCACCACCCTCTTTGGCTTCGAGT
TCAAAATTTGAGGTGCGCGTCGAATCTGGCGACAAAATCACCACCACCAT
CGATGTGTATGTCACCTGGGAACGAGGAGCAAAGCTTCTGGCCACGAGGC
CATGCAAGATAGACAGGCAATCCAAAACCGCTCATTTTGGCGGCGAACCG
CTCTCACAGGAGGTCACCCTCTTCAAGAAAAAGCGCGATAACGCTCAGTT
TGAACCTAAGATATACAAGCTCTACGTGCGACAGGCAAACGAACGCGGAA
AGATCCTCGCAAGGATTGACTTGGATTTCTCTGACGAGTTCTCTCTGCTT
TTGAAACGGCATATTTCGCTAATTAATTGGACATTGCGTTGA
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