Ggra8417.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8417.t1
Unique Name	Ggra8417.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	508

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:510547..512070 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8417	Ggra8417	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 510547..512070 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8417.t1.stop1	Ggra8417.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 510547..510549 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8417.t1.CDS1	Ggra8417.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 510547..512070 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8417.t1.exon1	Ggra8417.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 510547..512070 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8417.t1.start1	Ggra8417.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 512068..512070 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8417.t1	Ggra8417.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 510547..512070 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:510547..512070-
coding sequence from alignment at tig00000041_pilon:510547..512070-

mRNA sequence

>Ggra8417.t1 ID=Ggra8417.t1|Name=Ggra8417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=508bp
MRSPPPPPPPALQNVLVNRPGATGVVARRDNLLTAAVFAAEDAHEARSSR
SRSVFARMQRKMSRLGDTLRRRSRSERRNATQLVPAHHVAFDRNGHASRA
PQPPPASPAPSANVSDALASQVLLHRERILRVERENRHRRLAELSFDDID
DQVDEGELAVSSMREPTSRRVRQVGAREDDDTLLMLPRIASISFSAAGES
TPKQPTAKVRQLPRVSGLMPTRASPRHPSSPMASASPVSSTARSASTASS
GRRTLERQQQQQQQQQQQQQLDRRPSSSSNADSPRHRMYRLPTALFDRDV
EKEMECAIVEVASDGESDSSSDRQPQSVRERRIPGFSFDVSSSRAMSDVH
HEMRMPRPHAFVRRANSSLYTPNTDSDQEEQQQQQQQQSADSSSSAEAVD
EAEAQSSVMAMEKKKSMTRSCEMFEDDYLSFQGGFRSSSSERPHHHQSMS
SLLRSKRISSVTDSPSDDSDEANRQQGSSRRGRGRMLLLGSRRRRRHHSM
SAQRVGE*

spliced messenger RNA

>Ggra8417.t1 ID=Ggra8417.t1|Name=Ggra8417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00000041_pilon:510547..512070- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCCCCGCCGCCGCCGCCGCCGCCCGCGCTGCAGAACGTGCTCGT
CAACCGACCCGGCGCCACCGGCGTCGTGGCGCGGCGCGACAACCTGCTCA
CCGCCGCCGTCTTCGCCGCCGAGGACGCGCACGAGGCGCGCTCGTCGCGC
TCGCGCTCGGTGTTTGCGCGCATGCAGCGCAAGATGAGCCGTTTGGGCGA
CACGCTGCGCCGCCGCAGTCGCTCCGAGAGGCGCAACGCCACGCAGCTTG
TGCCCGCGCATCATGTCGCCTTCGACAGAAACGGCCACGCGTCACGCGCG
CCTCAGCCCCCGCCCGCGTCGCCCGCGCCGTCCGCCAACGTGTCCGACGC
GCTCGCCAGCCAGGTGTTGCTGCACCGCGAGCGCATCCTTAGGGTGGAGC
GCGAGAACCGCCACCGACGCCTTGCCGAGCTGTCCTTTGATGACATTGAT
GACCAAGTGGATGAGGGCGAGCTCGCCGTGTCTTCCATGAGGGAGCCTAC
CAGCAGGAGAGTTCGCCAGGTCGGCGCCCGTGAAGACGATGACACCTTGC
TCATGTTGCCTCGCATCGCCTCCATTTCCTTCTCCGCCGCGGGCGAATCC
ACCCCCAAGCAGCCCACCGCCAAAGTGCGTCAGCTGCCGAGGGTGTCGGG
TCTCATGCCCACCAGAGCGTCGCCGAGACACCCGTCGTCGCCAATGGCTT
CCGCCAGCCCCGTGTCGTCCACGGCGCGGTCGGCGAGCACTGCCAGCTCG
GGTCGCCGAACGCTAGAGCGACAACAACAACAACAACAACAACAACAACA
ACAACAACAACTTGACCGCCGCCCGTCGAGCAGCAGCAACGCCGATTCGC
CACGCCACCGTATGTATCGTTTACCCACCGCGTTGTTCGACAGGGACGTG
GAGAAGGAGATGGAGTGCGCCATCGTGGAAGTGGCATCAGACGGCGAATC
AGACAGTAGCTCGGACCGACAACCTCAAAGCGTGCGCGAGAGAAGGATCC
CCGGCTTCAGCTTTGACGTGAGTAGCAGTAGAGCAATGTCGGACGTGCAC
CACGAGATGCGTATGCCTCGCCCTCACGCTTTTGTTCGGCGCGCCAACTC
GTCGCTGTACACGCCGAACACGGATAGTGATCAAGAAGAACAACAACAAC
AGCAACAGCAACAGAGTGCAGACAGCAGTAGCAGCGCAGAGGCTGTGGAC
GAAGCTGAAGCGCAGTCAAGTGTGATGGCGATGGAAAAAAAAAAGTCCAT
GACTAGAAGTTGTGAAATGTTTGAAGATGATTACCTGAGTTTTCAAGGCG
GCTTTCGTTCCAGCTCGTCGGAACGACCGCACCACCATCAAAGCATGAGT
TCTTTGCTACGGTCGAAGCGAATCTCGTCGGTGACGGACTCACCTTCTGA
CGACTCGGACGAGGCGAATCGACAGCAGGGTAGCTCGCGACGCGGGAGAG
GTAGAATGCTACTGCTTGGGTCGCGGCGTCGACGCAGACACCACTCCATG
AGTGCGCAGCGCGTTGGTGAGTGA

protein sequence of Ggra8417.t1

>Ggra8417.t1 ID=Ggra8417.t1|Name=Ggra8417.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=508bp
MRSPPPPPPPALQNVLVNRPGATGVVARRDNLLTAAVFAAEDAHEARSSR
SRSVFARMQRKMSRLGDTLRRRSRSERRNATQLVPAHHVAFDRNGHASRA
PQPPPASPAPSANVSDALASQVLLHRERILRVERENRHRRLAELSFDDID
DQVDEGELAVSSMREPTSRRVRQVGAREDDDTLLMLPRIASISFSAAGES
TPKQPTAKVRQLPRVSGLMPTRASPRHPSSPMASASPVSSTARSASTASS
GRRTLERQQQQQQQQQQQQQLDRRPSSSSNADSPRHRMYRLPTALFDRDV
EKEMECAIVEVASDGESDSSSDRQPQSVRERRIPGFSFDVSSSRAMSDVH
HEMRMPRPHAFVRRANSSLYTPNTDSDQEEQQQQQQQQSADSSSSAEAVD
EAEAQSSVMAMEKKKSMTRSCEMFEDDYLSFQGGFRSSSSERPHHHQSMS
SLLRSKRISSVTDSPSDDSDEANRQQGSSRRGRGRMLLLGSRRRRRHHSM
SAQRVGE*

mRNA from alignment at tig00000041_pilon:510547..512070-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8417.t1 ID=Ggra8417.t1|Name=Ggra8417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00000041_pilon:510547..512070- (Gracilaria gracilis GNS1m male)
ATGCGCTCCCCGCCGCCGCCGCCGCCGCCCGCGCTGCAGAACGTGCTCGT
CAACCGACCCGGCGCCACCGGCGTCGTGGCGCGGCGCGACAACCTGCTCA
CCGCCGCCGTCTTCGCCGCCGAGGACGCGCACGAGGCGCGCTCGTCGCGC
TCGCGCTCGGTGTTTGCGCGCATGCAGCGCAAGATGAGCCGTTTGGGCGA
CACGCTGCGCCGCCGCAGTCGCTCCGAGAGGCGCAACGCCACGCAGCTTG
TGCCCGCGCATCATGTCGCCTTCGACAGAAACGGCCACGCGTCACGCGCG
CCTCAGCCCCCGCCCGCGTCGCCCGCGCCGTCCGCCAACGTGTCCGACGC
GCTCGCCAGCCAGGTGTTGCTGCACCGCGAGCGCATCCTTAGGGTGGAGC
GCGAGAACCGCCACCGACGCCTTGCCGAGCTGTCCTTTGATGACATTGAT
GACCAAGTGGATGAGGGCGAGCTCGCCGTGTCTTCCATGAGGGAGCCTAC
CAGCAGGAGAGTTCGCCAGGTCGGCGCCCGTGAAGACGATGACACCTTGC
TCATGTTGCCTCGCATCGCCTCCATTTCCTTCTCCGCCGCGGGCGAATCC
ACCCCCAAGCAGCCCACCGCCAAAGTGCGTCAGCTGCCGAGGGTGTCGGG
TCTCATGCCCACCAGAGCGTCGCCGAGACACCCGTCGTCGCCAATGGCTT
CCGCCAGCCCCGTGTCGTCCACGGCGCGGTCGGCGAGCACTGCCAGCTCG
GGTCGCCGAACGCTAGAGCGACAACAACAACAACAACAACAACAACAACA
ACAACAACAACTTGACCGCCGCCCGTCGAGCAGCAGCAACGCCGATTCGC
CACGCCACCGTATGTATCGTTTACCCACCGCGTTGTTCGACAGGGACGTG
GAGAAGGAGATGGAGTGCGCCATCGTGGAAGTGGCATCAGACGGCGAATC
AGACAGTAGCTCGGACCGACAACCTCAAAGCGTGCGCGAGAGAAGGATCC
CCGGCTTCAGCTTTGACGTGAGTAGCAGTAGAGCAATGTCGGACGTGCAC
CACGAGATGCGTATGCCTCGCCCTCACGCTTTTGTTCGGCGCGCCAACTC
GTCGCTGTACACGCCGAACACGGATAGTGATCAAGAAGAACAACAACAAC
AGCAACAGCAACAGAGTGCAGACAGCAGTAGCAGCGCAGAGGCTGTGGAC
GAAGCTGAAGCGCAGTCAAGTGTGATGGCGATGGAAAAAAAAAAGTCCAT
GACTAGAAGTTGTGAAATGTTTGAAGATGATTACCTGAGTTTTCAAGGCG
GCTTTCGTTCCAGCTCGTCGGAACGACCGCACCACCATCAAAGCATGAGT
TCTTTGCTACGGTCGAAGCGAATCTCGTCGGTGACGGACTCACCTTCTGA
CGACTCGGACGAGGCGAATCGACAGCAGGGTAGCTCGCGACGCGGGAGAG
GTAGAATGCTACTGCTTGGGTCGCGGCGTCGACGCAGACACCACTCCATG
AGTGCGCAGCGCGTTGGTGAGTGA

Coding sequence (CDS) from alignment at tig00000041_pilon:510547..512070-

>Ggra8417.t1 ID=Ggra8417.t1|Name=Ggra8417.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00000041_pilon:510547..512070- (Gracilaria gracilis GNS1m male)
ATGCGCTCCCCGCCGCCGCCGCCGCCGCCCGCGCTGCAGAACGTGCTCGT
CAACCGACCCGGCGCCACCGGCGTCGTGGCGCGGCGCGACAACCTGCTCA
CCGCCGCCGTCTTCGCCGCCGAGGACGCGCACGAGGCGCGCTCGTCGCGC
TCGCGCTCGGTGTTTGCGCGCATGCAGCGCAAGATGAGCCGTTTGGGCGA
CACGCTGCGCCGCCGCAGTCGCTCCGAGAGGCGCAACGCCACGCAGCTTG
TGCCCGCGCATCATGTCGCCTTCGACAGAAACGGCCACGCGTCACGCGCG
CCTCAGCCCCCGCCCGCGTCGCCCGCGCCGTCCGCCAACGTGTCCGACGC
GCTCGCCAGCCAGGTGTTGCTGCACCGCGAGCGCATCCTTAGGGTGGAGC
GCGAGAACCGCCACCGACGCCTTGCCGAGCTGTCCTTTGATGACATTGAT
GACCAAGTGGATGAGGGCGAGCTCGCCGTGTCTTCCATGAGGGAGCCTAC
CAGCAGGAGAGTTCGCCAGGTCGGCGCCCGTGAAGACGATGACACCTTGC
TCATGTTGCCTCGCATCGCCTCCATTTCCTTCTCCGCCGCGGGCGAATCC
ACCCCCAAGCAGCCCACCGCCAAAGTGCGTCAGCTGCCGAGGGTGTCGGG
TCTCATGCCCACCAGAGCGTCGCCGAGACACCCGTCGTCGCCAATGGCTT
CCGCCAGCCCCGTGTCGTCCACGGCGCGGTCGGCGAGCACTGCCAGCTCG
GGTCGCCGAACGCTAGAGCGACAACAACAACAACAACAACAACAACAACA
ACAACAACAACTTGACCGCCGCCCGTCGAGCAGCAGCAACGCCGATTCGC
CACGCCACCGTATGTATCGTTTACCCACCGCGTTGTTCGACAGGGACGTG
GAGAAGGAGATGGAGTGCGCCATCGTGGAAGTGGCATCAGACGGCGAATC
AGACAGTAGCTCGGACCGACAACCTCAAAGCGTGCGCGAGAGAAGGATCC
CCGGCTTCAGCTTTGACGTGAGTAGCAGTAGAGCAATGTCGGACGTGCAC
CACGAGATGCGTATGCCTCGCCCTCACGCTTTTGTTCGGCGCGCCAACTC
GTCGCTGTACACGCCGAACACGGATAGTGATCAAGAAGAACAACAACAAC
AGCAACAGCAACAGAGTGCAGACAGCAGTAGCAGCGCAGAGGCTGTGGAC
GAAGCTGAAGCGCAGTCAAGTGTGATGGCGATGGAAAAAAAAAAGTCCAT
GACTAGAAGTTGTGAAATGTTTGAAGATGATTACCTGAGTTTTCAAGGCG
GCTTTCGTTCCAGCTCGTCGGAACGACCGCACCACCATCAAAGCATGAGT
TCTTTGCTACGGTCGAAGCGAATCTCGTCGGTGACGGACTCACCTTCTGA
CGACTCGGACGAGGCGAATCGACAGCAGGGTAGCTCGCGACGCGGGAGAG
GTAGAATGCTACTGCTTGGGTCGCGGCGTCGACGCAGACACCACTCCATG
AGTGCGCAGCGCGTTGGTGAGTGA