Ggra8416.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8416.t1
Unique NameGgra8416.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:509279..510136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704635.1
Preferred nameCBR1
PFAMsFAD_binding_6,NAD_binding_1
Max annot lvl2759|Eukaryota
KEGG koko:K00326
KEGG ReactionR00100
KEGG Pathwayko00520,map00520
GOsGO:0000166,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0004128,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005886,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009505,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016491,GO:0016651,GO:0016653,GO:0019867,GO:0022900,GO:0030312,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901265,GO:1901360,GO:1901363
Evalue6.18e-83
EggNOG OGsCOG0543@1|root,KOG0534@2759|Eukaryota
EC1.6.2.2
Descriptioncytochrome-b5 reductase activity, acting on NAD(P)H
COG categoryCH
BiGG ReactioniMM904.YIL043C
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8416Ggra8416Gracilaria gracilis GNS1m malegenetig00000041_pilon 509279..510136 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8416.t1.start1Ggra8416.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 509279..509281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8416.t1.CDS1Ggra8416.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 509279..510136 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8416.t1.exon1Ggra8416.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 509279..510136 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8416.t1.stop1Ggra8416.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 510134..510136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8416.t1Ggra8416.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 509279..510136 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8416.t1 ID=Ggra8416.t1|Name=Ggra8416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MSAIVDQVLLYARHNPGVVAGVCVAVLLVGVTHVVFATAASSGAGALTTV
FEPYVLLHKKRVSHNTRLLRFALPTPTAKLGLPLGRHVSLRAFVDHKEVR
RPYTPVSSPHSTGFFELLVKIYPQPHGLMSRHLDALRVGQTVDVRGPLGR
FSYEPNAYRNINMVCGGTGITPMWQLFHSILADPADRTNVSLVFANVTEQ
DILLREQLDELADAEERFSLYYVLNEPPPNWQGGVGFVTKQMLQQRFAAP
DSDTLVLMCGPPPMNKAVKLILAEMGYTPSQLFKF*
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spliced messenger RNA

>Ggra8416.t1 ID=Ggra8416.t1|Name=Ggra8416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000041_pilon:509279..510136+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCATTGTCGATCAGGTGCTGCTCTACGCGCGCCACAACCCCGG
CGTGGTGGCCGGCGTGTGCGTGGCCGTGCTGCTGGTGGGGGTGACGCACG
TGGTGTTTGCCACCGCCGCCAGCAGCGGCGCCGGCGCGCTCACCACCGTC
TTCGAGCCGTACGTGCTGCTACACAAGAAGCGCGTCTCGCACAACACGCG
CCTGCTGCGCTTCGCGCTGCCCACGCCCACGGCCAAGCTGGGGCTGCCGC
TGGGGCGCCACGTCTCGCTGCGCGCCTTCGTGGACCATAAGGAGGTGCGC
CGCCCGTACACGCCAGTGTCGTCGCCGCATAGCACCGGCTTCTTCGAGCT
GCTGGTCAAGATCTACCCGCAGCCGCACGGGCTCATGTCGCGCCACCTGG
ATGCGCTGCGCGTCGGGCAGACCGTGGATGTACGCGGCCCGCTTGGGCGC
TTCAGCTACGAGCCCAACGCGTACCGCAACATCAACATGGTGTGCGGCGG
CACGGGCATCACGCCCATGTGGCAGCTGTTCCACTCCATTCTGGCCGACC
CGGCCGATCGCACCAACGTGTCGCTCGTGTTTGCAAACGTCACCGAGCAA
GACATCCTGCTGCGAGAGCAGCTGGACGAGCTCGCCGACGCGGAGGAGCG
CTTCTCGCTGTACTACGTGCTCAACGAGCCGCCGCCCAACTGGCAGGGCG
GCGTGGGCTTTGTCACCAAACAAATGCTGCAGCAACGCTTCGCCGCACCG
GACAGCGACACGCTGGTGCTCATGTGCGGGCCGCCGCCCATGAACAAGGC
CGTCAAGCTCATCCTCGCCGAGATGGGATACACGCCGTCGCAGCTGTTCA
AGTTCTGA
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protein sequence of Ggra8416.t1

>Ggra8416.t1 ID=Ggra8416.t1|Name=Ggra8416.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MSAIVDQVLLYARHNPGVVAGVCVAVLLVGVTHVVFATAASSGAGALTTV
FEPYVLLHKKRVSHNTRLLRFALPTPTAKLGLPLGRHVSLRAFVDHKEVR
RPYTPVSSPHSTGFFELLVKIYPQPHGLMSRHLDALRVGQTVDVRGPLGR
FSYEPNAYRNINMVCGGTGITPMWQLFHSILADPADRTNVSLVFANVTEQ
DILLREQLDELADAEERFSLYYVLNEPPPNWQGGVGFVTKQMLQQRFAAP
DSDTLVLMCGPPPMNKAVKLILAEMGYTPSQLFKF*
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mRNA from alignment at tig00000041_pilon:509279..510136+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8416.t1 ID=Ggra8416.t1|Name=Ggra8416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000041_pilon:509279..510136+ (Gracilaria gracilis GNS1m male)
ATGTCCGCCATTGTCGATCAGGTGCTGCTCTACGCGCGCCACAACCCCGG
CGTGGTGGCCGGCGTGTGCGTGGCCGTGCTGCTGGTGGGGGTGACGCACG
TGGTGTTTGCCACCGCCGCCAGCAGCGGCGCCGGCGCGCTCACCACCGTC
TTCGAGCCGTACGTGCTGCTACACAAGAAGCGCGTCTCGCACAACACGCG
CCTGCTGCGCTTCGCGCTGCCCACGCCCACGGCCAAGCTGGGGCTGCCGC
TGGGGCGCCACGTCTCGCTGCGCGCCTTCGTGGACCATAAGGAGGTGCGC
CGCCCGTACACGCCAGTGTCGTCGCCGCATAGCACCGGCTTCTTCGAGCT
GCTGGTCAAGATCTACCCGCAGCCGCACGGGCTCATGTCGCGCCACCTGG
ATGCGCTGCGCGTCGGGCAGACCGTGGATGTACGCGGCCCGCTTGGGCGC
TTCAGCTACGAGCCCAACGCGTACCGCAACATCAACATGGTGTGCGGCGG
CACGGGCATCACGCCCATGTGGCAGCTGTTCCACTCCATTCTGGCCGACC
CGGCCGATCGCACCAACGTGTCGCTCGTGTTTGCAAACGTCACCGAGCAA
GACATCCTGCTGCGAGAGCAGCTGGACGAGCTCGCCGACGCGGAGGAGCG
CTTCTCGCTGTACTACGTGCTCAACGAGCCGCCGCCCAACTGGCAGGGCG
GCGTGGGCTTTGTCACCAAACAAATGCTGCAGCAACGCTTCGCCGCACCG
GACAGCGACACGCTGGTGCTCATGTGCGGGCCGCCGCCCATGAACAAGGC
CGTCAAGCTCATCCTCGCCGAGATGGGATACACGCCGTCGCAGCTGTTCA
AGTTCTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:509279..510136+

>Ggra8416.t1 ID=Ggra8416.t1|Name=Ggra8416.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000041_pilon:509279..510136+ (Gracilaria gracilis GNS1m male)
ATGTCCGCCATTGTCGATCAGGTGCTGCTCTACGCGCGCCACAACCCCGG
CGTGGTGGCCGGCGTGTGCGTGGCCGTGCTGCTGGTGGGGGTGACGCACG
TGGTGTTTGCCACCGCCGCCAGCAGCGGCGCCGGCGCGCTCACCACCGTC
TTCGAGCCGTACGTGCTGCTACACAAGAAGCGCGTCTCGCACAACACGCG
CCTGCTGCGCTTCGCGCTGCCCACGCCCACGGCCAAGCTGGGGCTGCCGC
TGGGGCGCCACGTCTCGCTGCGCGCCTTCGTGGACCATAAGGAGGTGCGC
CGCCCGTACACGCCAGTGTCGTCGCCGCATAGCACCGGCTTCTTCGAGCT
GCTGGTCAAGATCTACCCGCAGCCGCACGGGCTCATGTCGCGCCACCTGG
ATGCGCTGCGCGTCGGGCAGACCGTGGATGTACGCGGCCCGCTTGGGCGC
TTCAGCTACGAGCCCAACGCGTACCGCAACATCAACATGGTGTGCGGCGG
CACGGGCATCACGCCCATGTGGCAGCTGTTCCACTCCATTCTGGCCGACC
CGGCCGATCGCACCAACGTGTCGCTCGTGTTTGCAAACGTCACCGAGCAA
GACATCCTGCTGCGAGAGCAGCTGGACGAGCTCGCCGACGCGGAGGAGCG
CTTCTCGCTGTACTACGTGCTCAACGAGCCGCCGCCCAACTGGCAGGGCG
GCGTGGGCTTTGTCACCAAACAAATGCTGCAGCAACGCTTCGCCGCACCG
GACAGCGACACGCTGGTGCTCATGTGCGGGCCGCCGCCCATGAACAAGGC
CGTCAAGCTCATCCTCGCCGAGATGGGATACACGCCGTCGCAGCTGTTCA
AGTTCTGA
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