Ggra8413.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8413.t1
Unique NameGgra8413.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length92
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:504040..504439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703880.1
Preferred nameRPL37
PFAMsRibosomal_L37e
Max annot lvl2759|Eukaryota
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K02922,ko:K06269,ko:K07891,ko:K09557
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko03010,ko03015,ko04022,ko04024,ko04113,ko04114,ko04144,ko04218,ko04261,ko04270,ko04390,ko04510,ko04611,ko04720,ko04728,ko04750,ko04810,ko04910,ko04921,ko04931,ko05031,ko05034,ko05168,ko05205,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map03010,map03015,map04022,map04024,map04113,map04114,map04144,map04218,map04261,map04270,map04390,map04510,map04611,map04720,map04728,map04750,map04810,map04910,map04921,map04931,map05031,map05034,map05168,map05205
KEGG ModuleM00135,M00177,M00179
GOsGO:0000184,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019838,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042886,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue2.26e-44
EggNOG OGsCOG2126@1|root,KOG3475@2759|Eukaryota
EC1.2.1.3,3.1.3.16
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01009,ko03011,ko03019,ko03021,ko03041,ko03110,ko04031,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8413Ggra8413Gracilaria gracilis GNS1m malegenetig00000041_pilon 504040..504439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8413.t1Ggra8413.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 504040..504439 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8413.t1.stop1Ggra8413.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 504040..504042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8413.t1.CDS1Ggra8413.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 504040..504312 -
Ggra8413.t1.CDS2Ggra8413.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 504437..504439 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8413.t1.exon1Ggra8413.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 504040..504312 -
Ggra8413.t1.exon2Ggra8413.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 504437..504439 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8413.t1.intron1Ggra8413.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 504313..504436 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8413.t1.start1Ggra8413.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 504437..504439 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8413.t1 ID=Ggra8413.t1|Name=Ggra8413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=92bp
MTKGTSSFGKRTSKTHTLCVRCGRRSYHIQKKQCASCGYPCARKRTYNWS
TKSKRRRTTGTGRLRHLRHVPRRFKNGFREGTVAQKITSVA*
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spliced messenger RNA

>Ggra8413.t1 ID=Ggra8413.t1|Name=Ggra8413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp|location=Sequence derived from alignment at tig00000041_pilon:504040..504439- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAAAGGAACCTCAAGTTTCGGAAAGCGTACGAGCAAGACGCATAC
CCTTTGCGTGCGATGCGGACGCCGATCATACCACATCCAGAAGAAGCAAT
GTGCTTCCTGTGGCTACCCGTGCGCTAGGAAGAGGACGTACAACTGGTCC
ACCAAGTCGAAGAGGAGGCGCACTACGGGTACCGGTCGCCTTCGCCACTT
GCGACACGTGCCTCGCCGCTTCAAGAACGGTTTCCGTGAGGGCACAGTCG
CCCAGAAGATCACCTCTGTGGCTTAA
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protein sequence of Ggra8413.t1

>Ggra8413.t1 ID=Ggra8413.t1|Name=Ggra8413.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=92bp
MTKGTSSFGKRTSKTHTLCVRCGRRSYHIQKKQCASCGYPCARKRTYNWS
TKSKRRRTTGTGRLRHLRHVPRRFKNGFREGTVAQKITSVA*
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mRNA from alignment at tig00000041_pilon:504040..504439-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8413.t1 ID=Ggra8413.t1|Name=Ggra8413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=400bp|location=Sequence derived from alignment at tig00000041_pilon:504040..504439- (Gracilaria gracilis GNS1m male)
ATGGTAAGTGCATAATGAGATCTGCCGCCCGAAGCGTATTGCTATGAGAA
TGGAAATCTGACTAGCAACCCTTGCCATCTTCATGCAATGACTCAACTAC
ATCGAATTGGCGCTTCTGCCTTTATAGACGAAAGGAACCTCAAGTTTCGG
AAAGCGTACGAGCAAGACGCATACCCTTTGCGTGCGATGCGGACGCCGAT
CATACCACATCCAGAAGAAGCAATGTGCTTCCTGTGGCTACCCGTGCGCT
AGGAAGAGGACGTACAACTGGTCCACCAAGTCGAAGAGGAGGCGCACTAC
GGGTACCGGTCGCCTTCGCCACTTGCGACACGTGCCTCGCCGCTTCAAGA
ACGGTTTCCGTGAGGGCACAGTCGCCCAGAAGATCACCTCTGTGGCTTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:504040..504439-

>Ggra8413.t1 ID=Ggra8413.t1|Name=Ggra8413.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=276bp|location=Sequence derived from alignment at tig00000041_pilon:504040..504439- (Gracilaria gracilis GNS1m male)
ATGACGAAAGGAACCTCAAGTTTCGGAAAGCGTACGAGCAAGACGCATAC
CCTTTGCGTGCGATGCGGACGCCGATCATACCACATCCAGAAGAAGCAAT
GTGCTTCCTGTGGCTACCCGTGCGCTAGGAAGAGGACGTACAACTGGTCC
ACCAAGTCGAAGAGGAGGCGCACTACGGGTACCGGTCGCCTTCGCCACTT
GCGACACGTGCCTCGCCGCTTCAAGAACGGTTTCCGTGAGGGCACAGTCG
CCCAGAAGATCACCTCTGTGGCTTAA
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