Ggra8409.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8409.t1
Unique NameGgra8409.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:493297..494709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702562.1
PFAMsIPPT
Max annot lvl2759|Eukaryota
KEGG rclassRC02820
KEGG koko:K00791
KEGG ReactionR01122
KEGG Pathwayko00908,ko01100,ko01110,map00908,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue1.73e-88
EggNOG OGsCOG0324@1|root,KOG1384@2759|Eukaryota
EC2.5.1.75
DescriptionCatalyzes the transfer of a dimethylallyl group onto the adenine at position 37
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01006,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8409Ggra8409Gracilaria gracilis GNS1m malegenetig00000041_pilon 493297..494709 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8409.t1.start1Ggra8409.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 493297..493299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8409.t1.CDS1Ggra8409.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 493297..494709 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8409.t1.exon1Ggra8409.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 493297..494709 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8409.t1.stop1Ggra8409.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 494707..494709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8409.t1Ggra8409.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 493297..494709 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8409.t1 ID=Ggra8409.t1|Name=Ggra8409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MRYAFIRLIMSGGKRPMCAGASHLSSPEKAVSSPRPTVVVIAGPTAVGKS
AAALQLCQMLQGEIISADSVQLYRYLNVGANKASEEERALVPHHMINIAD
PSCDDFTAGDFFRAARKAVDDVIKRGRLPVVVGGTMMYVRWFVYGPPATP
RADEHVKTRVKEALSSVHDDWEAGLALLAKRDPIRAAVLSRNDWYRLGRA
LEIVESTGTPMTDMPLQGGAPQTRYSSDTLDYDFRCVFLYDERIPLNRRI
DARCEEMVLPRGNLTGEHEQLMEKSILTEICRLLLCRGLRIAAASPAFAI
GYRQTIAYLTERALACQKQNTQAHIGSPEAANSDERSEEAIRAFRSFLEG
FQAVTRGYAKEQLKWFRKEKLFHWIKCDSNSEEALDTIVGMDEMEHEQFR
KEHEAEQLERREDIIRQGKEMKRYITEKQWLINGSEAEKIAVLAAERHAS
ELAHSLSTAELEQIHGIIRR*
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spliced messenger RNA

>Ggra8409.t1 ID=Ggra8409.t1|Name=Ggra8409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000041_pilon:493297..494709+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATATGCGTTTATTAGACTGATAATGTCGGGCGGTAAACGACCTAT
GTGCGCAGGTGCCTCTCACCTATCATCTCCTGAGAAAGCAGTTTCATCAC
CGAGACCGACGGTTGTGGTGATTGCGGGTCCTACGGCAGTGGGAAAGTCC
GCTGCAGCACTTCAGCTTTGTCAAATGTTACAGGGTGAAATCATTTCAGC
AGATTCAGTTCAACTGTATAGATACTTAAACGTCGGAGCGAATAAAGCAT
CGGAAGAAGAGCGAGCCTTGGTTCCACATCACATGATTAATATTGCCGAC
CCGTCTTGTGATGATTTTACCGCCGGAGACTTCTTCAGAGCCGCCAGAAA
GGCGGTAGATGACGTCATAAAGCGAGGACGTCTCCCGGTCGTCGTTGGCG
GAACTATGATGTATGTGCGATGGTTCGTTTATGGTCCCCCCGCAACACCT
CGTGCGGATGAGCACGTCAAGACCAGAGTCAAGGAAGCGCTGAGCAGTGT
GCACGATGACTGGGAGGCAGGACTTGCTCTCTTGGCAAAACGTGATCCGA
TTCGTGCAGCCGTGCTCTCAAGAAATGACTGGTATCGTTTGGGGCGAGCT
CTGGAAATTGTCGAGTCCACTGGTACGCCAATGACAGACATGCCCTTACA
AGGCGGTGCTCCTCAGACCCGGTACTCGAGCGATACTCTGGACTATGACT
TTAGATGTGTGTTCTTGTACGATGAGCGCATTCCTTTGAATCGGAGAATT
GACGCGCGATGTGAGGAGATGGTGCTTCCTCGAGGGAATTTAACAGGAGA
GCATGAACAGCTTATGGAGAAAAGCATTCTCACAGAAATTTGTCGTCTTC
TGCTCTGCCGCGGTTTGCGCATAGCAGCTGCATCTCCAGCATTTGCTATC
GGGTACCGTCAGACTATTGCATATCTTACAGAAAGAGCGCTTGCATGTCA
AAAGCAAAACACGCAAGCGCACATTGGTTCACCCGAAGCTGCAAACAGTG
ATGAGCGTTCCGAAGAAGCTATTCGCGCTTTCCGTTCTTTTCTGGAGGGA
TTTCAGGCAGTAACCCGAGGATATGCGAAGGAACAGCTGAAATGGTTTCG
CAAGGAAAAGTTGTTTCACTGGATAAAGTGTGATTCCAATTCGGAAGAGG
CGTTGGACACTATTGTGGGTATGGACGAAATGGAGCATGAGCAGTTCCGG
AAAGAGCACGAAGCGGAGCAGCTGGAGAGAAGGGAGGACATTATACGGCA
AGGCAAGGAGATGAAACGGTATATTACTGAGAAGCAGTGGTTAATCAACG
GCAGTGAAGCCGAGAAGATAGCAGTGCTTGCTGCCGAGCGACACGCTTCA
GAGCTTGCACACTCTCTGAGTACAGCAGAACTTGAACAAATACATGGCAT
TATAAGGCGCTGA
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protein sequence of Ggra8409.t1

>Ggra8409.t1 ID=Ggra8409.t1|Name=Ggra8409.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MRYAFIRLIMSGGKRPMCAGASHLSSPEKAVSSPRPTVVVIAGPTAVGKS
AAALQLCQMLQGEIISADSVQLYRYLNVGANKASEEERALVPHHMINIAD
PSCDDFTAGDFFRAARKAVDDVIKRGRLPVVVGGTMMYVRWFVYGPPATP
RADEHVKTRVKEALSSVHDDWEAGLALLAKRDPIRAAVLSRNDWYRLGRA
LEIVESTGTPMTDMPLQGGAPQTRYSSDTLDYDFRCVFLYDERIPLNRRI
DARCEEMVLPRGNLTGEHEQLMEKSILTEICRLLLCRGLRIAAASPAFAI
GYRQTIAYLTERALACQKQNTQAHIGSPEAANSDERSEEAIRAFRSFLEG
FQAVTRGYAKEQLKWFRKEKLFHWIKCDSNSEEALDTIVGMDEMEHEQFR
KEHEAEQLERREDIIRQGKEMKRYITEKQWLINGSEAEKIAVLAAERHAS
ELAHSLSTAELEQIHGIIRR*
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mRNA from alignment at tig00000041_pilon:493297..494709+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8409.t1 ID=Ggra8409.t1|Name=Ggra8409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000041_pilon:493297..494709+ (Gracilaria gracilis GNS1m male)
ATGCGATATGCGTTTATTAGACTGATAATGTCGGGCGGTAAACGACCTAT
GTGCGCAGGTGCCTCTCACCTATCATCTCCTGAGAAAGCAGTTTCATCAC
CGAGACCGACGGTTGTGGTGATTGCGGGTCCTACGGCAGTGGGAAAGTCC
GCTGCAGCACTTCAGCTTTGTCAAATGTTACAGGGTGAAATCATTTCAGC
AGATTCAGTTCAACTGTATAGATACTTAAACGTCGGAGCGAATAAAGCAT
CGGAAGAAGAGCGAGCCTTGGTTCCACATCACATGATTAATATTGCCGAC
CCGTCTTGTGATGATTTTACCGCCGGAGACTTCTTCAGAGCCGCCAGAAA
GGCGGTAGATGACGTCATAAAGCGAGGACGTCTCCCGGTCGTCGTTGGCG
GAACTATGATGTATGTGCGATGGTTCGTTTATGGTCCCCCCGCAACACCT
CGTGCGGATGAGCACGTCAAGACCAGAGTCAAGGAAGCGCTGAGCAGTGT
GCACGATGACTGGGAGGCAGGACTTGCTCTCTTGGCAAAACGTGATCCGA
TTCGTGCAGCCGTGCTCTCAAGAAATGACTGGTATCGTTTGGGGCGAGCT
CTGGAAATTGTCGAGTCCACTGGTACGCCAATGACAGACATGCCCTTACA
AGGCGGTGCTCCTCAGACCCGGTACTCGAGCGATACTCTGGACTATGACT
TTAGATGTGTGTTCTTGTACGATGAGCGCATTCCTTTGAATCGGAGAATT
GACGCGCGATGTGAGGAGATGGTGCTTCCTCGAGGGAATTTAACAGGAGA
GCATGAACAGCTTATGGAGAAAAGCATTCTCACAGAAATTTGTCGTCTTC
TGCTCTGCCGCGGTTTGCGCATAGCAGCTGCATCTCCAGCATTTGCTATC
GGGTACCGTCAGACTATTGCATATCTTACAGAAAGAGCGCTTGCATGTCA
AAAGCAAAACACGCAAGCGCACATTGGTTCACCCGAAGCTGCAAACAGTG
ATGAGCGTTCCGAAGAAGCTATTCGCGCTTTCCGTTCTTTTCTGGAGGGA
TTTCAGGCAGTAACCCGAGGATATGCGAAGGAACAGCTGAAATGGTTTCG
CAAGGAAAAGTTGTTTCACTGGATAAAGTGTGATTCCAATTCGGAAGAGG
CGTTGGACACTATTGTGGGTATGGACGAAATGGAGCATGAGCAGTTCCGG
AAAGAGCACGAAGCGGAGCAGCTGGAGAGAAGGGAGGACATTATACGGCA
AGGCAAGGAGATGAAACGGTATATTACTGAGAAGCAGTGGTTAATCAACG
GCAGTGAAGCCGAGAAGATAGCAGTGCTTGCTGCCGAGCGACACGCTTCA
GAGCTTGCACACTCTCTGAGTACAGCAGAACTTGAACAAATACATGGCAT
TATAAGGCGCTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:493297..494709+

>Ggra8409.t1 ID=Ggra8409.t1|Name=Ggra8409.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000041_pilon:493297..494709+ (Gracilaria gracilis GNS1m male)
ATGCGATATGCGTTTATTAGACTGATAATGTCGGGCGGTAAACGACCTAT
GTGCGCAGGTGCCTCTCACCTATCATCTCCTGAGAAAGCAGTTTCATCAC
CGAGACCGACGGTTGTGGTGATTGCGGGTCCTACGGCAGTGGGAAAGTCC
GCTGCAGCACTTCAGCTTTGTCAAATGTTACAGGGTGAAATCATTTCAGC
AGATTCAGTTCAACTGTATAGATACTTAAACGTCGGAGCGAATAAAGCAT
CGGAAGAAGAGCGAGCCTTGGTTCCACATCACATGATTAATATTGCCGAC
CCGTCTTGTGATGATTTTACCGCCGGAGACTTCTTCAGAGCCGCCAGAAA
GGCGGTAGATGACGTCATAAAGCGAGGACGTCTCCCGGTCGTCGTTGGCG
GAACTATGATGTATGTGCGATGGTTCGTTTATGGTCCCCCCGCAACACCT
CGTGCGGATGAGCACGTCAAGACCAGAGTCAAGGAAGCGCTGAGCAGTGT
GCACGATGACTGGGAGGCAGGACTTGCTCTCTTGGCAAAACGTGATCCGA
TTCGTGCAGCCGTGCTCTCAAGAAATGACTGGTATCGTTTGGGGCGAGCT
CTGGAAATTGTCGAGTCCACTGGTACGCCAATGACAGACATGCCCTTACA
AGGCGGTGCTCCTCAGACCCGGTACTCGAGCGATACTCTGGACTATGACT
TTAGATGTGTGTTCTTGTACGATGAGCGCATTCCTTTGAATCGGAGAATT
GACGCGCGATGTGAGGAGATGGTGCTTCCTCGAGGGAATTTAACAGGAGA
GCATGAACAGCTTATGGAGAAAAGCATTCTCACAGAAATTTGTCGTCTTC
TGCTCTGCCGCGGTTTGCGCATAGCAGCTGCATCTCCAGCATTTGCTATC
GGGTACCGTCAGACTATTGCATATCTTACAGAAAGAGCGCTTGCATGTCA
AAAGCAAAACACGCAAGCGCACATTGGTTCACCCGAAGCTGCAAACAGTG
ATGAGCGTTCCGAAGAAGCTATTCGCGCTTTCCGTTCTTTTCTGGAGGGA
TTTCAGGCAGTAACCCGAGGATATGCGAAGGAACAGCTGAAATGGTTTCG
CAAGGAAAAGTTGTTTCACTGGATAAAGTGTGATTCCAATTCGGAAGAGG
CGTTGGACACTATTGTGGGTATGGACGAAATGGAGCATGAGCAGTTCCGG
AAAGAGCACGAAGCGGAGCAGCTGGAGAGAAGGGAGGACATTATACGGCA
AGGCAAGGAGATGAAACGGTATATTACTGAGAAGCAGTGGTTAATCAACG
GCAGTGAAGCCGAGAAGATAGCAGTGCTTGCTGCCGAGCGACACGCTTCA
GAGCTTGCACACTCTCTGAGTACAGCAGAACTTGAACAAATACATGGCAT
TATAAGGCGCTGA
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