Ggra8407.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8407.t1
Unique NameGgra8407.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:489929..490867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003058814.1
PFAMsRPA_C,tRNA_anti-codon
Max annot lvl3041|Chlorophyta
KEGG koko:K10739
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Evalue7.14e-24
EggNOG OGsCOG5235@1|root,KOG3108@2759|Eukaryota,37Q34@33090|Viridiplantae,34HZC@3041|Chlorophyta
DescriptionReplication protein A C terminal
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8407Ggra8407Gracilaria gracilis GNS1m malegenetig00000041_pilon 489929..490867 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8407.t1.start1Ggra8407.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 489929..489931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8407.t1.CDS1Ggra8407.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 489929..490867 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8407.t1.exon1Ggra8407.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 489929..490867 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8407.t1.stop1Ggra8407.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 490865..490867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8407.t1Ggra8407.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 489929..490867 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8407.t1 ID=Ggra8407.t1|Name=Ggra8407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MSFAQGYNNHSNAAYGFGYGGGGGGGGGGGGGGDYNNSYSQPGAGFLPTS
QPHADDGASPPSESVQPLTIKQLLAAEPDPTDAHKFCVNGAKLHQLTLVA
RIVAADVQVTAIALTLDDCTALIHASYMMPVDDEIASSEMAAHKRAWISP
GAWLRVVGALRVQQGARSLAVYRIRRVIDFNELTYHRLDVVSSFLAHTRA
PPRAVAAGGVAGSMGAMGARAVSAAPHLNSFDAAAGVDDGLAMNPLQRVV
YEYVKSNKDVAQRGVTVDEVTRHAAAAHGATPATVKEILDGFASDGHMYT
TIDEHHYAFCRL*
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spliced messenger RNA

>Ggra8407.t1 ID=Ggra8407.t1|Name=Ggra8407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000041_pilon:489929..490867+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgtcgtttgcgcagggctacaacaaccactccaacgccgcctacggctt
tggttacggcggcggcggcggcggcggcggcggcggcggcggaggcggcg
actacaacaactcgtactcgcagccgggcgcgggcttcctgcccacgtcg
caaccgcacgccgACGACGGCGCGTCGCCGCCGTCCGAGAGCGTGCAGCC
GCTCACCATCAAGCAGCTGCTGGCGGCGGAGCCCGACCCCACCGACGCGC
ACAAGTTCTGCGTCAACGGCGCCAAGCTGCACCAGCTCACGCTGGTGGCG
CGCATCGTGGCCGCCGACGTGCAGGTCACCGCCATCGCGCTCACGCTCGA
CGACTGCACCGCGCTCATCCACGCCAGCTACATGATGCCCGTCGACGACG
AGATCGCCTCCAGCGAAATGGCCGCGCACAAACGCGCCTGGATCTCCCCC
GGCGCCTGGCTGCGCGTCGTGGGCGCGCTGCGCGTGCAGCAGGGCGCACG
CTCGCTGGCCGTTTACCGCATCCGTCGCGTCATCGACTTCAACGAGCTCA
CGTACCACCGGCTGGACGTGGTGTCCAGCTTTCTGGCGCATACGcgcgcg
ccgccgcgcgccgtcgccgcTGGTGGAGTGGCGGGCTCCATGGGCGCCAT
GGGCGCGCGCGCCGTCTCGGCCGCGCCGCATCTCAACAGCTTTGACGCCG
CCGCTGGCGTGGACGACGGGCTGGCCATGAACCCACTGCAGAGGGTGGTG
TACGAGTACGTCAAGTCGAACAAGGACGTGGCGCAGAGGGGCGTCACCGT
GGACGAGGTCACCCGACACGCCGCCGCCGCGCACGGCGCCACGCCGGCCA
CCGTCAAGGAGATTCTGGATGGCTTTGCGTCCGATGGCCACATGTACACC
ACCATCGACGAGCATCACTACGCCTTTTGCCGCCTCTAA
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protein sequence of Ggra8407.t1

>Ggra8407.t1 ID=Ggra8407.t1|Name=Ggra8407.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MSFAQGYNNHSNAAYGFGYGGGGGGGGGGGGGGDYNNSYSQPGAGFLPTS
QPHADDGASPPSESVQPLTIKQLLAAEPDPTDAHKFCVNGAKLHQLTLVA
RIVAADVQVTAIALTLDDCTALIHASYMMPVDDEIASSEMAAHKRAWISP
GAWLRVVGALRVQQGARSLAVYRIRRVIDFNELTYHRLDVVSSFLAHTRA
PPRAVAAGGVAGSMGAMGARAVSAAPHLNSFDAAAGVDDGLAMNPLQRVV
YEYVKSNKDVAQRGVTVDEVTRHAAAAHGATPATVKEILDGFASDGHMYT
TIDEHHYAFCRL*
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mRNA from alignment at tig00000041_pilon:489929..490867+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8407.t1 ID=Ggra8407.t1|Name=Ggra8407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000041_pilon:489929..490867+ (Gracilaria gracilis GNS1m male)
atgtcgtttgcgcagggctacaacaaccactccaacgccgcctacggctt
tggttacggcggcggcggcggcggcggcggcggcggcggcggaggcggcg
actacaacaactcgtactcgcagccgggcgcgggcttcctgcccacgtcg
caaccgcacgccgACGACGGCGCGTCGCCGCCGTCCGAGAGCGTGCAGCC
GCTCACCATCAAGCAGCTGCTGGCGGCGGAGCCCGACCCCACCGACGCGC
ACAAGTTCTGCGTCAACGGCGCCAAGCTGCACCAGCTCACGCTGGTGGCG
CGCATCGTGGCCGCCGACGTGCAGGTCACCGCCATCGCGCTCACGCTCGA
CGACTGCACCGCGCTCATCCACGCCAGCTACATGATGCCCGTCGACGACG
AGATCGCCTCCAGCGAAATGGCCGCGCACAAACGCGCCTGGATCTCCCCC
GGCGCCTGGCTGCGCGTCGTGGGCGCGCTGCGCGTGCAGCAGGGCGCACG
CTCGCTGGCCGTTTACCGCATCCGTCGCGTCATCGACTTCAACGAGCTCA
CGTACCACCGGCTGGACGTGGTGTCCAGCTTTCTGGCGCATACGcgcgcg
ccgccgcgcgccgtcgccgcTGGTGGAGTGGCGGGCTCCATGGGCGCCAT
GGGCGCGCGCGCCGTCTCGGCCGCGCCGCATCTCAACAGCTTTGACGCCG
CCGCTGGCGTGGACGACGGGCTGGCCATGAACCCACTGCAGAGGGTGGTG
TACGAGTACGTCAAGTCGAACAAGGACGTGGCGCAGAGGGGCGTCACCGT
GGACGAGGTCACCCGACACGCCGCCGCCGCGCACGGCGCCACGCCGGCCA
CCGTCAAGGAGATTCTGGATGGCTTTGCGTCCGATGGCCACATGTACACC
ACCATCGACGAGCATCACTACGCCTTTTGCCGCCTCTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:489929..490867+

>Ggra8407.t1 ID=Ggra8407.t1|Name=Ggra8407.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000041_pilon:489929..490867+ (Gracilaria gracilis GNS1m male)
atgtcgtttgcgcagggctacaacaaccactccaacgccgcctacggctt
tggttacggcggcggcggcggcggcggcggcggcggcggcggaggcggcg
actacaacaactcgtactcgcagccgggcgcgggcttcctgcccacgtcg
caaccgcacgccgACGACGGCGCGTCGCCGCCGTCCGAGAGCGTGCAGCC
GCTCACCATCAAGCAGCTGCTGGCGGCGGAGCCCGACCCCACCGACGCGC
ACAAGTTCTGCGTCAACGGCGCCAAGCTGCACCAGCTCACGCTGGTGGCG
CGCATCGTGGCCGCCGACGTGCAGGTCACCGCCATCGCGCTCACGCTCGA
CGACTGCACCGCGCTCATCCACGCCAGCTACATGATGCCCGTCGACGACG
AGATCGCCTCCAGCGAAATGGCCGCGCACAAACGCGCCTGGATCTCCCCC
GGCGCCTGGCTGCGCGTCGTGGGCGCGCTGCGCGTGCAGCAGGGCGCACG
CTCGCTGGCCGTTTACCGCATCCGTCGCGTCATCGACTTCAACGAGCTCA
CGTACCACCGGCTGGACGTGGTGTCCAGCTTTCTGGCGCATACGcgcgcg
ccgccgcgcgccgtcgccgcTGGTGGAGTGGCGGGCTCCATGGGCGCCAT
GGGCGCGCGCGCCGTCTCGGCCGCGCCGCATCTCAACAGCTTTGACGCCG
CCGCTGGCGTGGACGACGGGCTGGCCATGAACCCACTGCAGAGGGTGGTG
TACGAGTACGTCAAGTCGAACAAGGACGTGGCGCAGAGGGGCGTCACCGT
GGACGAGGTCACCCGACACGCCGCCGCCGCGCACGGCGCCACGCCGGCCA
CCGTCAAGGAGATTCTGGATGGCTTTGCGTCCGATGGCCACATGTACACC
ACCATCGACGAGCATCACTACGCCTTTTGCCGCCTCTAA
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