Ggra8395.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8395.t1
Unique NameGgra8395.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:463851..464927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX36616
Preferred nameTBCB
PFAMsCAP_GLY,F-box-like,Ubiquitin_2,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K10259,ko:K10260,ko:K10423,ko:K10592,ko:K17262,ko:K21766
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00379,M00387
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000151,GO:0000152,GO:0000209,GO:0000226,GO:0000278,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005938,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007049,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007389,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009798,GO:0009889,GO:0009987,GO:0009994,GO:0010035,GO:0010038,GO:0010468,GO:0010498,GO:0010556,GO:0015630,GO:0016043,GO:0016567,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030010,GO:0030154,GO:0030163,GO:0030174,GO:0030674,GO:0031122,GO:0031146,GO:0031323,GO:0031326,GO:0031461,GO:0032182,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0035088,GO:0035089,GO:0036211,GO:0042221,GO:0043130,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0046483,GO:0046685,GO:0046686,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051252,GO:0051603,GO:0051704,GO:0060090,GO:0060255,GO:0061162,GO:0061245,GO:0061339,GO:0065003,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072686,GO:0080090,GO:0090304,GO:0090329,GO:0097435,GO:0099568,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902494,GO:1903047,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue4.39e-05
EggNOG OGsKOG0274@1|root,KOG3206@1|root,KOG0274@2759|Eukaryota,KOG3206@2759|Eukaryota
EC2.3.2.26
Descriptioncell differentiation
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8395Ggra8395Gracilaria gracilis GNS1m malegenetig00000041_pilon 463851..464927 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8395.t1.start1Ggra8395.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 463851..463853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8395.t1.CDS1Ggra8395.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 463851..464927 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8395.t1.exon1Ggra8395.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 463851..464927 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8395.t1.stop1Ggra8395.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 464925..464927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8395.t1Ggra8395.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 463851..464927 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8395.t1 ID=Ggra8395.t1|Name=Ggra8395.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MNGNNRKQSALWTVGRASRGLLRCSDTHRDLIIAGTALTNSDNSMHILSV
DCEAISLQPLNILTAPSEVWSHDVVAKDSNLNIIAATRKSYTSAVEVWSL
TGADDLSPRISRSPSWDASGYDAHPIRNTSFMAIDGDILKVVKNPAATSS
YIALTKTGATFLSVGTSLQIALSLQLDRSKFPVKSETDTFVDAGWIDETT
AYIASTKCFAAFDLRSGEFELVTDTEQAINSSTSVQDDLYVPPYPTRIST
TLSTNGTELIVGGEDGSLRSYDMKKSNIVWQLPLAHAQWVSTLCETRAGQ
FLSGGMDGVVRCWTKEGHPIATFPQHDDIVTNAISFDSAFVSVSYDGRLA
MNELPTAL*
back to top

spliced messenger RNA

>Ggra8395.t1 ID=Ggra8395.t1|Name=Ggra8395.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000041_pilon:463851..464927+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGGAACAATCGGAAACAATCCGCCCTTTGGACTGTTGGCCGAGC
CTCACGCGGTTTGCTGCGATGCTCAGATACACACAGAGATCTCATAATTG
CTGGCACCGCGCTCACTAATTCTGACAATTCTATGCACATTCTCTCTGTG
GATTGCGAAGCTATCTCCCTGCAACCGTTGAACATTCTTACTGCACCGTC
CGAGGTATGGTCTCACGACGTAGTCGCCAAAGATTCTAACTTGAACATCA
TCGCGGCAACGCGGAAGTCATATACATCTGCAGTCGAGGTATGGTCATTG
ACGGGTGCCGATGACTTATCACCCCGCATTTCGAGATCGCCCTCCTGGGA
TGCCAGTGGTTACGATGCGCATCCCATCCGCAACACATCTTTTATGGCGA
TTGATGGTGACATACTAAAGGTTGTGAAGAATCCCGCAGCCACTTCATCC
TACATCGCATTGACTAAGACCGGCGCAACCTTTTTGTCAGTTGGCACGTC
TCTGCAGATAGCTCTTTCTTTACAGCTTGACCGTTCAAAGTTTCCGGTGA
AGTCTGAAACAGATACTTTTGTTGACGCTGGATGGATAGATGAGACCACT
GCTTATATTGCGTCCACAAAGTGCTTCGCTGCATTCGACTTGCGAAGTGG
TGAGTTTGAGCTCGTCACGGACACAGAACAGGCTATCAATTCATCCACTT
CTGTTCAAGATGATCTGTATGTCCCCCCTTACCCCACGCGAATATCAACT
ACTCTATCGACGAATGGCACAGAGTTAATTGTCGGAGGAGAAGATGGCTC
TCTTAGATCCTACGATATGAAGAAATCCAATATTGTATGGCAATTGCCTC
TTGCACATGCCCAATGGGTTTCCACATTGTGTGAGACTCGAGCTGGACAA
TTCCTGAGCGGTGGAATGGATGGCGTTGTGCGCTGTTGGACGAAGGAAGG
GCATCCAATAGCTACCTTTCCGCAACATGACGACATCGTGACAAATGCCA
TAAGCTTCGATTCTGCCTTTGTATCAGTTTCATACGACGGAAGACTTGCA
ATGAACGAACTACCGACCGCACTGTAG
back to top

protein sequence of Ggra8395.t1

>Ggra8395.t1 ID=Ggra8395.t1|Name=Ggra8395.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MNGNNRKQSALWTVGRASRGLLRCSDTHRDLIIAGTALTNSDNSMHILSV
DCEAISLQPLNILTAPSEVWSHDVVAKDSNLNIIAATRKSYTSAVEVWSL
TGADDLSPRISRSPSWDASGYDAHPIRNTSFMAIDGDILKVVKNPAATSS
YIALTKTGATFLSVGTSLQIALSLQLDRSKFPVKSETDTFVDAGWIDETT
AYIASTKCFAAFDLRSGEFELVTDTEQAINSSTSVQDDLYVPPYPTRIST
TLSTNGTELIVGGEDGSLRSYDMKKSNIVWQLPLAHAQWVSTLCETRAGQ
FLSGGMDGVVRCWTKEGHPIATFPQHDDIVTNAISFDSAFVSVSYDGRLA
MNELPTAL*
back to top

mRNA from alignment at tig00000041_pilon:463851..464927+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8395.t1 ID=Ggra8395.t1|Name=Ggra8395.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000041_pilon:463851..464927+ (Gracilaria gracilis GNS1m male)
ATGAATGGGAACAATCGGAAACAATCCGCCCTTTGGACTGTTGGCCGAGC
CTCACGCGGTTTGCTGCGATGCTCAGATACACACAGAGATCTCATAATTG
CTGGCACCGCGCTCACTAATTCTGACAATTCTATGCACATTCTCTCTGTG
GATTGCGAAGCTATCTCCCTGCAACCGTTGAACATTCTTACTGCACCGTC
CGAGGTATGGTCTCACGACGTAGTCGCCAAAGATTCTAACTTGAACATCA
TCGCGGCAACGCGGAAGTCATATACATCTGCAGTCGAGGTATGGTCATTG
ACGGGTGCCGATGACTTATCACCCCGCATTTCGAGATCGCCCTCCTGGGA
TGCCAGTGGTTACGATGCGCATCCCATCCGCAACACATCTTTTATGGCGA
TTGATGGTGACATACTAAAGGTTGTGAAGAATCCCGCAGCCACTTCATCC
TACATCGCATTGACTAAGACCGGCGCAACCTTTTTGTCAGTTGGCACGTC
TCTGCAGATAGCTCTTTCTTTACAGCTTGACCGTTCAAAGTTTCCGGTGA
AGTCTGAAACAGATACTTTTGTTGACGCTGGATGGATAGATGAGACCACT
GCTTATATTGCGTCCACAAAGTGCTTCGCTGCATTCGACTTGCGAAGTGG
TGAGTTTGAGCTCGTCACGGACACAGAACAGGCTATCAATTCATCCACTT
CTGTTCAAGATGATCTGTATGTCCCCCCTTACCCCACGCGAATATCAACT
ACTCTATCGACGAATGGCACAGAGTTAATTGTCGGAGGAGAAGATGGCTC
TCTTAGATCCTACGATATGAAGAAATCCAATATTGTATGGCAATTGCCTC
TTGCACATGCCCAATGGGTTTCCACATTGTGTGAGACTCGAGCTGGACAA
TTCCTGAGCGGTGGAATGGATGGCGTTGTGCGCTGTTGGACGAAGGAAGG
GCATCCAATAGCTACCTTTCCGCAACATGACGACATCGTGACAAATGCCA
TAAGCTTCGATTCTGCCTTTGTATCAGTTTCATACGACGGAAGACTTGCA
ATGAACGAACTACCGACCGCACTGTAG
back to top

Coding sequence (CDS) from alignment at tig00000041_pilon:463851..464927+

>Ggra8395.t1 ID=Ggra8395.t1|Name=Ggra8395.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000041_pilon:463851..464927+ (Gracilaria gracilis GNS1m male)
ATGAATGGGAACAATCGGAAACAATCCGCCCTTTGGACTGTTGGCCGAGC
CTCACGCGGTTTGCTGCGATGCTCAGATACACACAGAGATCTCATAATTG
CTGGCACCGCGCTCACTAATTCTGACAATTCTATGCACATTCTCTCTGTG
GATTGCGAAGCTATCTCCCTGCAACCGTTGAACATTCTTACTGCACCGTC
CGAGGTATGGTCTCACGACGTAGTCGCCAAAGATTCTAACTTGAACATCA
TCGCGGCAACGCGGAAGTCATATACATCTGCAGTCGAGGTATGGTCATTG
ACGGGTGCCGATGACTTATCACCCCGCATTTCGAGATCGCCCTCCTGGGA
TGCCAGTGGTTACGATGCGCATCCCATCCGCAACACATCTTTTATGGCGA
TTGATGGTGACATACTAAAGGTTGTGAAGAATCCCGCAGCCACTTCATCC
TACATCGCATTGACTAAGACCGGCGCAACCTTTTTGTCAGTTGGCACGTC
TCTGCAGATAGCTCTTTCTTTACAGCTTGACCGTTCAAAGTTTCCGGTGA
AGTCTGAAACAGATACTTTTGTTGACGCTGGATGGATAGATGAGACCACT
GCTTATATTGCGTCCACAAAGTGCTTCGCTGCATTCGACTTGCGAAGTGG
TGAGTTTGAGCTCGTCACGGACACAGAACAGGCTATCAATTCATCCACTT
CTGTTCAAGATGATCTGTATGTCCCCCCTTACCCCACGCGAATATCAACT
ACTCTATCGACGAATGGCACAGAGTTAATTGTCGGAGGAGAAGATGGCTC
TCTTAGATCCTACGATATGAAGAAATCCAATATTGTATGGCAATTGCCTC
TTGCACATGCCCAATGGGTTTCCACATTGTGTGAGACTCGAGCTGGACAA
TTCCTGAGCGGTGGAATGGATGGCGTTGTGCGCTGTTGGACGAAGGAAGG
GCATCCAATAGCTACCTTTCCGCAACATGACGACATCGTGACAAATGCCA
TAAGCTTCGATTCTGCCTTTGTATCAGTTTCATACGACGGAAGACTTGCA
ATGAACGAACTACCGACCGCACTGTAG
back to top