Ggra8301.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8301.t1
Unique Name	Ggra8301.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	554

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000958_pilon	contig	tig00000958_pilon:114556..116217 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8301	Ggra8301	Gracilaria gracilis GNS1m male	gene	tig00000958_pilon 114556..116217 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8301.t1.start1	Ggra8301.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000958_pilon 114556..114558 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8301.t1.CDS1	Ggra8301.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000958_pilon 114556..116217 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8301.t1.exon1	Ggra8301.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000958_pilon 114556..116217 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8301.t1.stop1	Ggra8301.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000958_pilon 116215..116217 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8301.t1	Ggra8301.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000958_pilon 114556..116217 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000958_pilon:114556..116217+
coding sequence from alignment at tig00000958_pilon:114556..116217+

mRNA sequence

>Ggra8301.t1 ID=Ggra8301.t1|Name=Ggra8301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp
MIRRAIIPESDSEDERLHHYGHSSDDDTDQFDPSQGFCTPLSAQHDDNND
PRAAFRRRLNVQRRSLPAPTPQHVQIFRSKRRRLESPRAAKELMKSKKEN
WEDMIEHILVVDPSFFDGPDGRMEDPTKKKRGSHFYKGLSLTTDNCEDIQ
LIYDVRYRAASVFQKKSDAFDGVRSVAGQLMRLAIASKLMDRHEGYIKNR
LFRFLSDFEVVEYFVNHFVLTTSPYTVASKCNFLLRLISVGETQLQDAQG
MSAKFEKVATYLRSMAASSKKEGRAKRRRERLIDISSDKHNLLYDSDLRK
AFSLAKHQLEDVMKTFRLDEHKKKDSFNARLREKPSLVDKWFINFLAAVV
FSCGGQRPQAVSSIQVPTKHELDRVESTAFGDFFSLRSNFDKRERSLNFP
AVMLPVSMKPLVNFHVKVMRTFVCRRMNISFAAESNPLLLHSHEGTGLTT
RSITNSIRMFMTNINKRYEFVTSMVVRASYATSMVHCFKTNKIGEGLSEE
KFLDLLANRMNTSAEQLKDAYVHIRRVDYEKGVKLAMEHFLVVMDEDKDE
NDM*

spliced messenger RNA

>Ggra8301.t1 ID=Ggra8301.t1|Name=Ggra8301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000958_pilon:114556..116217+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGCCGTGCCATCATCCCCGAGTCCGACTCGGAGGACGAGCGGCT
CCACCATTATGGCCACTCTTCCGATGATGACACCGACCAATTTGACCCGT
CGCAAGGTTTTTGTACTCCTCTGAGTGCGCAACACGATGACAATAACGAT
CCTAGAGCCGCGTTTAGAAGACGTCTCAACGTGCAGCGTCGATCACTCCC
AGCGCCGACGCCGCAACATGTGCAGATTTTTAGATCCAAACGTCGCCGTT
TGGAGTCTCCGAGAGCAGCAAAAGAGCTTATGAAGTCCAAAAAGGAGAAT
TGGGAAGACATGATAGAGCATATTTTGGTTGTTGATCCTTCTTTCTTTGA
CGGTCCTGATGGCCGAATGGAAGACCCGACTAAGAAGAAGCGAGGTTCCC
ATTTCTACAAAGGCCTTTCATTGACGACTGATAATTGCGAAGATATTCAA
CTAATTTACGACGTGAGGTATCGCGCGGCCTCCGTGTTCCAGAAGAAGTC
TGACGCCTTTGACGGGGTTAGATCAGTTGCGGGCCAACTGATGCGTTTGG
CAATTGCAAGCAAACTAATGGATCGTCATGAAGGTTATATCAAGAACCGT
CTCTTTCGTTTTCTTTCAGACTTCGAAGTGGTAGAGTACTTTGTTAATCA
CTTTGTCCTTACAACCAGTCCGTACACGGTGGCATCTAAGTGTAACTTTC
TTCTTAGGCTAATATCCGTGGGCGAGACTCAGCTACAGGATGCACAAGGT
ATGTCCGCGAAGTTTGAGAAGGTCGCCACGTATTTGCGTAGCATGGCAGC
GTCATCGAAGAAGGAAGGAAGAGCGAAGAGGCGCCGTGAACGCCTGATCG
ATATTTCTTCGGATAAGCACAATTTACTATACGACAGTGATTTGCGCAAA
GCTTTTTCGCTGGCGAAGCACCAGCTCGAGGACGTCATGAAGACTTTTCG
ATTGGATGAACACAAGAAGAAAGACTCATTCAACGCAAGGCTACGTGAGA
AACCGAGTTTGGTGGACAAGTGGTTTATTAACTTTCTCGCAGCTGTCGTC
TTTTCTTGTGGTGGGCAACGTCCTCAAGCTGTGTCGAGCATTCAGGTTCC
AACTAAGCACGAACTTGACAGGGTAGAGTCTACTGCGTTTGGCGACTTTT
TCAGTCTCCGTTCGAATTTCGACAAGCGAGAACGAAGTCTCAACTTTCCG
GCGGTTATGCTCCCAGTTTCTATGAAGCCGTTGGTCAACTTTCATGTCAA
GGTAATGAGAACTTTTGTCTGTCGCCGTATGAACATCTCTTTTGCAGCAG
AAAGTAACCCCTTGCTGCTACACTCTCATGAAGGAACAGGTTTGACTACT
CGCAGCATCACGAATTCGATTCGGATGTTCATGACAAACATCAATAAGCG
GTATGAGTTCGTTACGTCGATGGTTGTGCGCGCAAGTTATGCAACGTCAA
TGGTTCATTGCTTTAAGACAAATAAAATTGGAGAAGGGCTAAGTGAAGAG
AAGTTCTTGGACCTACTTGCAAATCGGATGAACACAAGTGCTGAGCAATT
GAAGGATGCATACGTGCATATTCGTCGTGTTGACTATGAGAAAGGAGTAA
AATTAGCTATGGAACACTTTCTGGTTGTCATGGACGAGGACAAAGATGAG
AATGATATGTGA

protein sequence of Ggra8301.t1

>Ggra8301.t1 ID=Ggra8301.t1|Name=Ggra8301.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=554bp
MIRRAIIPESDSEDERLHHYGHSSDDDTDQFDPSQGFCTPLSAQHDDNND
PRAAFRRRLNVQRRSLPAPTPQHVQIFRSKRRRLESPRAAKELMKSKKEN
WEDMIEHILVVDPSFFDGPDGRMEDPTKKKRGSHFYKGLSLTTDNCEDIQ
LIYDVRYRAASVFQKKSDAFDGVRSVAGQLMRLAIASKLMDRHEGYIKNR
LFRFLSDFEVVEYFVNHFVLTTSPYTVASKCNFLLRLISVGETQLQDAQG
MSAKFEKVATYLRSMAASSKKEGRAKRRRERLIDISSDKHNLLYDSDLRK
AFSLAKHQLEDVMKTFRLDEHKKKDSFNARLREKPSLVDKWFINFLAAVV
FSCGGQRPQAVSSIQVPTKHELDRVESTAFGDFFSLRSNFDKRERSLNFP
AVMLPVSMKPLVNFHVKVMRTFVCRRMNISFAAESNPLLLHSHEGTGLTT
RSITNSIRMFMTNINKRYEFVTSMVVRASYATSMVHCFKTNKIGEGLSEE
KFLDLLANRMNTSAEQLKDAYVHIRRVDYEKGVKLAMEHFLVVMDEDKDE
NDM*

mRNA from alignment at tig00000958_pilon:114556..116217+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8301.t1 ID=Ggra8301.t1|Name=Ggra8301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000958_pilon:114556..116217+ (Gracilaria gracilis GNS1m male)
ATGATTCGCCGTGCCATCATCCCCGAGTCCGACTCGGAGGACGAGCGGCT
CCACCATTATGGCCACTCTTCCGATGATGACACCGACCAATTTGACCCGT
CGCAAGGTTTTTGTACTCCTCTGAGTGCGCAACACGATGACAATAACGAT
CCTAGAGCCGCGTTTAGAAGACGTCTCAACGTGCAGCGTCGATCACTCCC
AGCGCCGACGCCGCAACATGTGCAGATTTTTAGATCCAAACGTCGCCGTT
TGGAGTCTCCGAGAGCAGCAAAAGAGCTTATGAAGTCCAAAAAGGAGAAT
TGGGAAGACATGATAGAGCATATTTTGGTTGTTGATCCTTCTTTCTTTGA
CGGTCCTGATGGCCGAATGGAAGACCCGACTAAGAAGAAGCGAGGTTCCC
ATTTCTACAAAGGCCTTTCATTGACGACTGATAATTGCGAAGATATTCAA
CTAATTTACGACGTGAGGTATCGCGCGGCCTCCGTGTTCCAGAAGAAGTC
TGACGCCTTTGACGGGGTTAGATCAGTTGCGGGCCAACTGATGCGTTTGG
CAATTGCAAGCAAACTAATGGATCGTCATGAAGGTTATATCAAGAACCGT
CTCTTTCGTTTTCTTTCAGACTTCGAAGTGGTAGAGTACTTTGTTAATCA
CTTTGTCCTTACAACCAGTCCGTACACGGTGGCATCTAAGTGTAACTTTC
TTCTTAGGCTAATATCCGTGGGCGAGACTCAGCTACAGGATGCACAAGGT
ATGTCCGCGAAGTTTGAGAAGGTCGCCACGTATTTGCGTAGCATGGCAGC
GTCATCGAAGAAGGAAGGAAGAGCGAAGAGGCGCCGTGAACGCCTGATCG
ATATTTCTTCGGATAAGCACAATTTACTATACGACAGTGATTTGCGCAAA
GCTTTTTCGCTGGCGAAGCACCAGCTCGAGGACGTCATGAAGACTTTTCG
ATTGGATGAACACAAGAAGAAAGACTCATTCAACGCAAGGCTACGTGAGA
AACCGAGTTTGGTGGACAAGTGGTTTATTAACTTTCTCGCAGCTGTCGTC
TTTTCTTGTGGTGGGCAACGTCCTCAAGCTGTGTCGAGCATTCAGGTTCC
AACTAAGCACGAACTTGACAGGGTAGAGTCTACTGCGTTTGGCGACTTTT
TCAGTCTCCGTTCGAATTTCGACAAGCGAGAACGAAGTCTCAACTTTCCG
GCGGTTATGCTCCCAGTTTCTATGAAGCCGTTGGTCAACTTTCATGTCAA
GGTAATGAGAACTTTTGTCTGTCGCCGTATGAACATCTCTTTTGCAGCAG
AAAGTAACCCCTTGCTGCTACACTCTCATGAAGGAACAGGTTTGACTACT
CGCAGCATCACGAATTCGATTCGGATGTTCATGACAAACATCAATAAGCG
GTATGAGTTCGTTACGTCGATGGTTGTGCGCGCAAGTTATGCAACGTCAA
TGGTTCATTGCTTTAAGACAAATAAAATTGGAGAAGGGCTAAGTGAAGAG
AAGTTCTTGGACCTACTTGCAAATCGGATGAACACAAGTGCTGAGCAATT
GAAGGATGCATACGTGCATATTCGTCGTGTTGACTATGAGAAAGGAGTAA
AATTAGCTATGGAACACTTTCTGGTTGTCATGGACGAGGACAAAGATGAG
AATGATATGTGA

Coding sequence (CDS) from alignment at tig00000958_pilon:114556..116217+

>Ggra8301.t1 ID=Ggra8301.t1|Name=Ggra8301.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1662bp|location=Sequence derived from alignment at tig00000958_pilon:114556..116217+ (Gracilaria gracilis GNS1m male)
ATGATTCGCCGTGCCATCATCCCCGAGTCCGACTCGGAGGACGAGCGGCT
CCACCATTATGGCCACTCTTCCGATGATGACACCGACCAATTTGACCCGT
CGCAAGGTTTTTGTACTCCTCTGAGTGCGCAACACGATGACAATAACGAT
CCTAGAGCCGCGTTTAGAAGACGTCTCAACGTGCAGCGTCGATCACTCCC
AGCGCCGACGCCGCAACATGTGCAGATTTTTAGATCCAAACGTCGCCGTT
TGGAGTCTCCGAGAGCAGCAAAAGAGCTTATGAAGTCCAAAAAGGAGAAT
TGGGAAGACATGATAGAGCATATTTTGGTTGTTGATCCTTCTTTCTTTGA
CGGTCCTGATGGCCGAATGGAAGACCCGACTAAGAAGAAGCGAGGTTCCC
ATTTCTACAAAGGCCTTTCATTGACGACTGATAATTGCGAAGATATTCAA
CTAATTTACGACGTGAGGTATCGCGCGGCCTCCGTGTTCCAGAAGAAGTC
TGACGCCTTTGACGGGGTTAGATCAGTTGCGGGCCAACTGATGCGTTTGG
CAATTGCAAGCAAACTAATGGATCGTCATGAAGGTTATATCAAGAACCGT
CTCTTTCGTTTTCTTTCAGACTTCGAAGTGGTAGAGTACTTTGTTAATCA
CTTTGTCCTTACAACCAGTCCGTACACGGTGGCATCTAAGTGTAACTTTC
TTCTTAGGCTAATATCCGTGGGCGAGACTCAGCTACAGGATGCACAAGGT
ATGTCCGCGAAGTTTGAGAAGGTCGCCACGTATTTGCGTAGCATGGCAGC
GTCATCGAAGAAGGAAGGAAGAGCGAAGAGGCGCCGTGAACGCCTGATCG
ATATTTCTTCGGATAAGCACAATTTACTATACGACAGTGATTTGCGCAAA
GCTTTTTCGCTGGCGAAGCACCAGCTCGAGGACGTCATGAAGACTTTTCG
ATTGGATGAACACAAGAAGAAAGACTCATTCAACGCAAGGCTACGTGAGA
AACCGAGTTTGGTGGACAAGTGGTTTATTAACTTTCTCGCAGCTGTCGTC
TTTTCTTGTGGTGGGCAACGTCCTCAAGCTGTGTCGAGCATTCAGGTTCC
AACTAAGCACGAACTTGACAGGGTAGAGTCTACTGCGTTTGGCGACTTTT
TCAGTCTCCGTTCGAATTTCGACAAGCGAGAACGAAGTCTCAACTTTCCG
GCGGTTATGCTCCCAGTTTCTATGAAGCCGTTGGTCAACTTTCATGTCAA
GGTAATGAGAACTTTTGTCTGTCGCCGTATGAACATCTCTTTTGCAGCAG
AAAGTAACCCCTTGCTGCTACACTCTCATGAAGGAACAGGTTTGACTACT
CGCAGCATCACGAATTCGATTCGGATGTTCATGACAAACATCAATAAGCG
GTATGAGTTCGTTACGTCGATGGTTGTGCGCGCAAGTTATGCAACGTCAA
TGGTTCATTGCTTTAAGACAAATAAAATTGGAGAAGGGCTAAGTGAAGAG
AAGTTCTTGGACCTACTTGCAAATCGGATGAACACAAGTGCTGAGCAATT
GAAGGATGCATACGTGCATATTCGTCGTGTTGACTATGAGAAAGGAGTAA
AATTAGCTATGGAACACTTTCTGGTTGTCATGGACGAGGACAAAGATGAG
AATGATATGTGA